Docstring - #130
Conversation
|
Requires the other PR to be merged. |
Benchmark comparisonSpeed (wall time per call)baseline Showing the 5 most-changed measurements per case; the rest are collapsed. Rows with a baseline below 3 ms are tagged
|
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_save |
11.90 ±0.07 | 11.55 ±0.31 | -2.9% | 0.320 |
nii_erode_msk |
6.16 ±0.11 | 6.10 ±0.08 | -1.0% | 0.232 |
nii_filter_connected_components |
4.25 ±0.02 | 4.21 ±0.02 | -1.0% | 0.004 |
nii_fill_holes |
4.62 ±0.04 | 4.66 ±0.03 | +0.9% | 0.377 |
nii_load_img |
11.75 ±0.06 | 11.84 ±1.20 | +0.8% | 0.158 |
… 31 more measurements
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
poi_calc_poi_from_subreg_vert |
11.48 ±0.25 | 11.41 ±0.06 | -0.6% | 0.183 |
nii_dilate_msk |
120.12 ±2.07 | 119.42 ±0.30 | -0.6% | 0.223 |
nii_rescale_seg |
3.07 ±0.04 | 3.06 ±0.04 | -0.5% | 0.827 |
nii_resample_from_to |
41.55 ±0.23 | 41.65 ±0.13 | +0.2% | 0.656 |
nii_rescale |
39.72 ±0.16 | 39.65 ±0.10 | -0.2% | 0.768 |
poi_calc_centroids_nocrop |
4.31 ±0.05 | 4.31 ±0.05 | -0.1% | 0.584 |
metric_voxels |
250463.00 ±0.00 | 250463.00 ±0.00 | +0.0% | — |
metric_labels |
3.00 ±0.00 | 3.00 ±0.00 | +0.0% | — |
metric_foreground_pct |
14.51 ±0.00 | 14.51 ±0.00 | +0.0% | — |
nii_get_array |
0.03 ±0.00 | 0.05 ±0.01 | +39.7% (noise) | 0.004 |
poi_reorient |
0.38 ±0.03 | 0.34 ±0.03 | -11.6% (noise) | 0.034 |
poi_save |
0.38 ±0.02 | 0.35 ±0.02 | -7.0% (noise) | 0.204 |
poi_rescale |
0.19 ±0.02 | 0.18 ±0.01 | -6.8% (noise) | 0.351 |
poi_resample_from_to |
0.57 ±0.04 | 0.61 ±0.05 | +6.8% (noise) | 0.169 |
nii_extract_label |
0.34 ±0.02 | 0.32 ±0.01 | -5.5% (noise) | 0.147 |
poi_load |
0.87 ±0.02 | 0.92 ±0.05 | +5.3% (noise) | 0.186 |
nii_compute_crop |
0.27 ±0.01 | 0.29 ±0.02 | +4.7% (noise) | 0.094 |
nii_unique |
0.58 ±0.01 | 0.56 ±0.01 | -3.7% (noise) | 0.036 |
nii_load_seg |
2.70 ±0.03 | 2.79 ±0.04 | +3.2% (noise) | 0.007 |
poi_map_labels |
0.14 ±0.01 | 0.15 ±0.01 | +2.5% (noise) | 0.970 |
nii_apply_crop |
0.51 ±0.02 | 0.50 ±0.03 | -2.3% (noise) | 0.943 |
nii_reorient |
0.71 ±0.04 | 0.73 ±0.06 | +2.2% (noise) | 0.351 |
nii_get_connected_components |
2.03 ±0.04 | 1.98 ±0.03 | -2.2% (noise) | 0.130 |
nii_set_dtype |
0.40 ±0.03 | 0.41 ±0.02 | +2.1% (noise) | 0.795 |
poi_to_global |
0.17 ±0.02 | 0.17 ±0.02 | +2.1% (noise) | 0.979 |
poi_calc_centroids |
2.45 ±0.04 | 2.40 ±0.01 | -1.8% (noise) | 0.051 |
nii_pad_to |
0.56 ±0.03 | 0.55 ±0.04 | -1.7% (noise) | 0.644 |
poi_local_to_global_arr |
0.24 ±0.01 | 0.24 ±0.01 | +1.6% (noise) | 0.876 |
nii_map_labels |
0.79 ±0.01 | 0.79 ±0.04 | -0.7% (noise) | 0.743 |
nii_volumes |
1.89 ±0.02 | 1.89 ±0.01 | +0.2% (noise) | 0.325 |
nii_center_of_masses |
1.79 ±0.02 | 1.79 ±0.02 | +0.1% (noise) | 0.363 |
ct_2d — shape (73, 47, 1)
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_rescale |
5.59 ±0.12 | 5.31 ±0.06 | -5.2% | 0.007 |
nii_dilate_msk |
13.78 ±0.09 | 13.91 ±0.86 | +0.9% | 0.330 |
nii_resample_from_to |
7.23 ±0.04 | 7.16 ±0.06 | -0.9% | 0.094 |
metric_voxels |
3431.00 ±0.00 | 3431.00 ±0.00 | +0.0% | — |
metric_labels |
3.00 ±0.00 | 3.00 ±0.00 | +0.0% | — |
… 30 more measurements
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
metric_foreground_pct |
37.60 ±0.00 | 37.60 ±0.00 | +0.0% | — |
poi_save |
0.54 ±0.09 | 0.47 ±0.01 | -12.8% (noise) | 0.114 |
poi_resample_from_to |
0.76 ±0.05 | 0.68 ±0.03 | -10.1% (noise) | 0.034 |
nii_center_of_masses |
0.20 ±0.01 | 0.22 ±0.01 | +9.3% (noise) | 0.203 |
poi_reorient |
0.48 ±0.02 | 0.45 ±0.01 | -6.9% (noise) | 0.004 |
nii_compute_crop |
0.15 ±0.01 | 0.14 ±0.01 | -5.7% (noise) | 0.508 |
nii_rescale_seg |
0.80 ±0.03 | 0.76 ±0.02 | -5.2% (noise) | 0.025 |
nii_unique |
0.12 ±0.01 | 0.13 ±0.01 | +4.8% (noise) | 0.994 |
nii_reorient |
0.80 ±0.03 | 0.76 ±0.04 | -4.7% (noise) | 0.275 |
nii_save |
1.38 ±0.05 | 1.33 ±0.02 | -4.2% (noise) | 0.114 |
nii_filter_connected_components |
0.85 ±0.01 | 0.81 ±0.03 | -4.1% (noise) | 0.363 |
nii_fill_holes |
0.84 ±0.04 | 0.81 ±0.01 | -4.1% (noise) | 0.311 |
nii_load_seg |
1.65 ±0.05 | 1.59 ±0.03 | -3.9% (noise) | 0.006 |
nii_apply_crop |
0.68 ±0.01 | 0.65 ±0.01 | -3.6% (noise) | 0.011 |
poi_map_labels |
0.21 ±0.01 | 0.21 ±0.04 | -3.6% (noise) | 0.626 |
nii_extract_label |
0.44 ±0.01 | 0.43 ±0.02 | -3.4% (noise) | 0.135 |
poi_calc_centroids |
0.93 ±0.03 | 0.90 ±0.03 | -2.7% (noise) | 0.226 |
nii_load_img |
1.46 ±0.04 | 1.43 ±0.04 | -2.0% (noise) | 0.951 |
poi_rescale |
0.28 ±0.01 | 0.27 ±0.02 | -1.6% (noise) | 0.263 |
nii_pad_to |
0.55 ±0.01 | 0.54 ±0.02 | -1.6% (noise) | 0.138 |
poi_local_to_global_arr |
0.28 ±0.01 | 0.28 ±0.01 | -1.4% (noise) | 0.348 |
nii_volumes |
0.29 ±0.01 | 0.30 ±0.01 | +1.2% (noise) | 0.412 |
nii_map_labels |
0.49 ±0.07 | 0.50 ±0.11 | +1.1% (noise) | 0.686 |
nii_erode_msk |
0.95 ±0.03 | 0.94 ±0.02 | -1.1% (noise) | 0.119 |
poi_to_global |
0.24 ±0.01 | 0.24 ±0.01 | +1.1% (noise) | 0.937 |
poi_calc_centroids_nocrop |
1.09 ±0.02 | 1.08 ±0.03 | -0.8% (noise) | 0.438 |
nii_get_connected_components |
0.66 ±0.03 | 0.66 ±0.03 | -0.7% (noise) | 0.594 |
nii_get_array |
0.02 ±0.00 | 0.02 ±0.00 | +0.6% (noise) | 0.974 |
poi_load |
1.01 ±0.02 | 1.01 ±0.01 | -0.6% (noise) | 0.135 |
nii_set_dtype |
0.40 ±0.02 | 0.40 ±0.02 | -0.1% (noise) | 0.739 |
mri_3d — shape (68, 52, 67)
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_rescale_seg |
3.06 ±0.02 | 3.18 ±0.48 | +4.0% | 0.124 |
nii_load_img |
9.73 ±0.08 | 9.50 ±0.09 | -2.4% | 0.005 |
nii_save |
9.68 ±0.08 | 9.48 ±0.14 | -2.1% | 0.041 |
poi_calc_poi_from_subreg_vert |
11.01 ±0.19 | 10.85 ±0.39 | -1.5% | 0.777 |
nii_resample_from_to |
39.50 ±0.98 | 38.92 ±0.09 | -1.5% | 0.140 |
… 31 more measurements
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_erode_msk |
7.66 ±0.04 | 7.56 ±0.13 | -1.3% | 0.350 |
nii_fill_holes |
5.56 ±0.01 | 5.49 ±0.01 | -1.2% | 0.000 |
nii_rescale |
37.59 ±0.32 | 37.15 ±0.30 | -1.2% | 0.311 |
nii_filter_connected_components |
4.59 ±0.04 | 4.54 ±0.02 | -1.2% | 0.052 |
nii_dilate_msk |
154.41 ±0.47 | 153.80 ±0.25 | -0.4% | 0.014 |
poi_calc_centroids_nocrop |
9.00 ±0.08 | 8.98 ±0.04 | -0.3% | 0.349 |
metric_voxels |
236912.00 ±0.00 | 236912.00 ±0.00 | +0.0% | — |
metric_labels |
8.00 ±0.00 | 8.00 ±0.00 | +0.0% | — |
metric_foreground_pct |
18.21 ±0.00 | 18.21 ±0.00 | +0.0% | — |
nii_pad_to |
0.74 ±0.04 | 0.81 ±0.07 | +10.1% (noise) | 0.196 |
poi_to_global |
0.27 ±0.00 | 0.29 ±0.01 | +5.6% (noise) | 0.008 |
poi_reorient |
0.51 ±0.02 | 0.49 ±0.09 | -4.3% (noise) | 0.600 |
nii_extract_label |
0.47 ±0.00 | 0.45 ±0.02 | -4.1% (noise) | 0.220 |
poi_local_to_global_arr |
0.30 ±0.01 | 0.29 ±0.01 | -3.9% (noise) | 0.160 |
poi_load |
2.12 ±0.04 | 2.19 ±0.04 | +3.6% (noise) | 0.025 |
nii_get_array |
0.05 ±0.00 | 0.04 ±0.00 | -3.4% (noise) | 0.425 |
poi_resample_from_to |
0.76 ±0.03 | 0.78 ±0.04 | +3.3% (noise) | 0.148 |
poi_map_labels |
0.26 ±0.01 | 0.26 ±0.03 | +2.4% (noise) | 0.231 |
poi_rescale |
0.31 ±0.02 | 0.30 ±0.01 | -2.1% (noise) | 0.621 |
nii_get_connected_components |
2.11 ±0.03 | 2.06 ±0.02 | -2.1% (noise) | 0.065 |
nii_compute_crop |
0.35 ±0.01 | 0.35 ±0.00 | +1.4% (noise) | 0.785 |
nii_apply_crop |
0.69 ±0.02 | 0.70 ±0.01 | +1.4% (noise) | 0.740 |
poi_save |
0.58 ±0.02 | 0.57 ±0.01 | -1.3% (noise) | 0.930 |
nii_volumes |
2.05 ±0.02 | 2.02 ±0.01 | -1.3% (noise) | 0.010 |
nii_load_seg |
2.90 ±0.09 | 2.87 ±0.11 | -1.1% (noise) | 0.694 |
nii_set_dtype |
0.53 ±0.04 | 0.53 ±0.03 | -0.7% (noise) | 0.880 |
nii_center_of_masses |
2.08 ±0.01 | 2.07 ±0.02 | -0.6% (noise) | 0.095 |
nii_unique |
0.60 ±0.01 | 0.60 ±0.02 | -0.5% (noise) | 0.983 |
nii_map_labels |
0.99 ±0.01 | 0.99 ±0.01 | +0.4% (noise) | 0.815 |
poi_calc_centroids |
2.83 ±0.03 | 2.83 ±0.05 | +0.1% (noise) | 0.501 |
nii_reorient |
0.86 ±0.02 | 0.86 ±0.02 | -0.1% (noise) | 0.926 |
mri_2d — shape (68, 52, 1)
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_dilate_msk |
18.40 ±0.18 | 18.20 ±0.04 | -1.1% | 0.048 |
nii_resample_from_to |
7.31 ±0.07 | 7.35 ±0.13 | +0.6% | 0.533 |
nii_rescale |
5.54 ±0.07 | 5.53 ±0.16 | -0.2% | 0.922 |
metric_voxels |
3536.00 ±0.00 | 3536.00 ±0.00 | +0.0% | — |
metric_labels |
7.00 ±0.00 | 7.00 ±0.00 | +0.0% | — |
… 30 more measurements
| Measurement | baseline ms (median ±½·range) | head ms (median ±½·range) | Δ % | p |
|---|---|---|---|---|
metric_foreground_pct |
50.17 ±0.00 | 50.17 ±0.00 | +0.0% | — |
poi_rescale |
0.30 ±0.01 | 0.35 ±0.04 | +15.1% (noise) | 0.063 |
nii_get_array |
0.02 ±0.00 | 0.02 ±0.00 | +9.3% (noise) | 0.465 |
nii_extract_label |
0.42 ±0.01 | 0.46 ±0.01 | +9.2% (noise) | 0.001 |
poi_resample_from_to |
0.78 ±0.02 | 0.71 ±0.03 | -8.9% (noise) | 0.029 |
nii_get_connected_components |
0.67 ±0.04 | 0.63 ±0.02 | -6.5% (noise) | 0.131 |
nii_reorient |
0.77 ±0.03 | 0.81 ±0.02 | +5.9% (noise) | 0.006 |
nii_filter_connected_components |
0.88 ±0.02 | 0.83 ±0.01 | -5.7% (noise) | 0.002 |
nii_rescale_seg |
0.78 ±0.02 | 0.82 ±0.03 | +4.4% (noise) | 0.015 |
nii_set_dtype |
0.40 ±0.01 | 0.42 ±0.01 | +4.2% (noise) | 0.063 |
nii_map_labels |
0.50 ±0.02 | 0.52 ±0.02 | +4.0% (noise) | 0.035 |
poi_map_labels |
0.26 ±0.01 | 0.24 ±0.01 | -4.0% (noise) | 0.057 |
nii_fill_holes |
1.04 ±0.03 | 1.00 ±0.01 | -3.7% (noise) | 0.132 |
nii_erode_msk |
1.20 ±0.01 | 1.16 ±0.04 | -3.7% (noise) | 0.026 |
poi_save |
0.56 ±0.02 | 0.54 ±0.02 | -3.3% (noise) | 0.152 |
poi_reorient |
0.50 ±0.01 | 0.51 ±0.10 | +3.2% (noise) | 0.352 |
nii_load_img |
1.47 ±0.03 | 1.42 ±0.03 | -2.9% (noise) | 0.035 |
nii_compute_crop |
0.15 ±0.01 | 0.16 ±0.00 | +2.9% (noise) | 0.225 |
nii_load_seg |
1.56 ±0.03 | 1.59 ±0.03 | +2.1% (noise) | 0.124 |
nii_save |
1.32 ±0.04 | 1.35 ±0.05 | +1.8% (noise) | 0.185 |
nii_apply_crop |
0.69 ±0.01 | 0.68 ±0.02 | -1.8% (noise) | 0.530 |
nii_volumes |
0.45 ±0.01 | 0.46 ±0.02 | +1.8% (noise) | 0.214 |
poi_calc_centroids |
1.12 ±0.04 | 1.10 ±0.03 | -1.7% (noise) | 0.407 |
nii_unique |
0.14 ±0.01 | 0.14 ±0.01 | +1.7% (noise) | 0.317 |
nii_center_of_masses |
0.40 ±0.02 | 0.40 ±0.02 | -1.6% (noise) | 0.340 |
poi_load |
1.91 ±0.02 | 1.88 ±0.03 | -1.5% (noise) | 0.038 |
poi_calc_centroids_nocrop |
1.34 ±0.04 | 1.32 ±0.04 | -1.1% (noise) | 0.692 |
nii_pad_to |
0.57 ±0.02 | 0.56 ±0.01 | -1.0% (noise) | 0.326 |
poi_local_to_global_arr |
0.30 ±0.02 | 0.30 ±0.01 | -0.3% (noise) | 0.354 |
poi_to_global |
0.30 ±0.02 | 0.30 ±0.02 | +0.1% (noise) | 0.718 |
Gate: a measurement fails when the baseline is ≥ 1 ms, the median grows by ≥ 50%, and Welch's t-test gives p < 0.05. metric_* rows are context only.
Memory (peak RSS growth per call)
baseline 6e64150 vs head 6e64150 · python 3.11.15 · 5 repeats + 1 warmup · sampler proc-status, isolation fork · measurement floor ≈ 0.90 MiB
Showing the 5 most-changed measurements per case; the rest are collapsed. Rows with a baseline below 3 MiB are tagged (noise) — runner jitter on those swamps any real change.
ct_3d — shape (73, 47, 73)
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_rescale_seg |
5.95 ±0.00 | 6.00 ±0.00 | +0.9% | — |
nii_rescale |
6.18 ±0.00 | 6.23 ±0.00 | +0.8% | — |
nii_resample_from_to |
6.30 ±0.00 | 6.35 ±0.00 | +0.8% | — |
nii_erode_msk |
5.95 ±0.00 | 5.92 ±0.00 | -0.5% | — |
poi_resample_from_to |
5.28 ±0.00 | 5.27 ±0.00 | -0.3% | — |
… 31 more measurements
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_set_dtype |
5.25 ±0.00 | 5.23 ±0.00 | -0.2% | — |
nii_pad_to |
5.43 ±0.00 | 5.42 ±0.00 | -0.2% | — |
nii_extract_label |
5.43 ±0.00 | 5.42 ±0.00 | -0.2% | — |
nii_map_labels |
5.50 ±0.00 | 5.48 ±0.00 | -0.2% | — |
nii_apply_crop |
5.87 ±0.00 | 5.86 ±0.00 | -0.2% | — |
nii_reorient |
5.91 ±0.00 | 5.90 ±0.00 | -0.2% | — |
poi_calc_centroids_nocrop |
5.93 ±0.00 | 5.92 ±0.00 | -0.2% | — |
nii_dilate_msk |
5.93 ±0.00 | 5.92 ±0.00 | -0.2% | — |
nii_load_seg |
6.01 ±0.00 | 6.00 ±0.00 | -0.2% | — |
poi_calc_centroids |
6.06 ±0.00 | 6.05 ±0.00 | -0.2% | — |
nii_fill_holes |
6.29 ±0.00 | 6.27 ±0.00 | -0.2% | — |
nii_get_connected_components |
6.62 ±0.00 | 6.61 ±0.00 | -0.2% | — |
nii_filter_connected_components |
6.87 ±0.00 | 6.86 ±0.00 | -0.2% | — |
poi_calc_poi_from_subreg_vert |
7.11 ±0.00 | 7.10 ±0.00 | -0.2% | — |
poi_to_global |
3.09 ±0.00 | 3.09 ±0.00 | +0.1% | — |
nii_center_of_masses |
3.28 ±0.00 | 3.28 ±0.00 | +0.1% | — |
nii_volumes |
3.53 ±0.00 | 3.53 ±0.00 | +0.1% | — |
nii_load_img |
3.57 ±0.00 | 3.57 ±0.00 | +0.1% | — |
nii_save |
3.71 ±0.00 | 3.72 ±0.00 | +0.1% | — |
poi_reorient |
3.84 ±0.00 | 3.84 ±0.00 | +0.1% | — |
metric_voxels |
250463.00 ±0.00 | 250463.00 ±0.00 | +0.0% | — |
metric_labels |
3.00 ±0.00 | 3.00 ±0.00 | +0.0% | — |
metric_foreground_pct |
14.51 ±0.00 | 14.51 ±0.00 | +0.0% | — |
nii_get_array |
1.65 ±0.00 | 1.66 ±0.00 | +0.2% (noise) | — |
poi_rescale |
2.61 ±0.00 | 2.61 ±0.00 | +0.1% (noise) | — |
nii_compute_crop |
2.90 ±0.00 | 2.91 ±0.00 | +0.1% (noise) | — |
poi_local_to_global_arr |
2.96 ±0.00 | 2.96 ±0.00 | +0.1% (noise) | — |
nii_unique |
2.96 ±0.00 | 2.97 ±0.00 | +0.1% (noise) | — |
poi_save |
1.41 ±0.00 | 1.41 ±0.00 | +0.0% (noise) | — |
poi_map_labels |
1.78 ±0.00 | 1.78 ±0.00 | +0.0% (noise) | — |
poi_load |
1.62 ±0.00 | 1.62 ±0.00 | +0.0% (noise) | — |
ct_2d — shape (73, 47, 1)
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_rescale_seg |
5.88 ±0.00 | 5.93 ±0.00 | +0.8% | — |
nii_rescale |
6.11 ±0.00 | 6.16 ±0.00 | +0.8% | — |
nii_resample_from_to |
6.23 ±0.00 | 6.28 ±0.00 | +0.8% | — |
nii_erode_msk |
5.88 ±0.00 | 5.85 ±0.00 | -0.5% | — |
nii_set_dtype |
5.18 ±0.00 | 5.16 ±0.00 | -0.3% | — |
… 30 more measurements
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
poi_resample_from_to |
5.21 ±0.00 | 5.20 ±0.00 | -0.3% | — |
nii_pad_to |
5.36 ±0.00 | 5.35 ±0.00 | -0.3% | — |
nii_extract_label |
5.37 ±0.00 | 5.35 ±0.00 | -0.3% | — |
nii_map_labels |
5.43 ±0.00 | 5.41 ±0.00 | -0.3% | — |
nii_apply_crop |
5.80 ±0.00 | 5.79 ±0.00 | -0.3% | — |
nii_reorient |
5.84 ±0.00 | 5.83 ±0.00 | -0.3% | — |
nii_dilate_msk |
5.87 ±0.00 | 5.85 ±0.00 | -0.3% | — |
poi_calc_centroids_nocrop |
5.93 ±0.00 | 5.91 ±0.00 | -0.3% | — |
nii_load_seg |
5.95 ±0.00 | 5.93 ±0.00 | -0.3% | — |
poi_calc_centroids |
5.99 ±0.00 | 5.98 ±0.00 | -0.3% | — |
nii_fill_holes |
6.22 ±0.00 | 6.20 ±0.00 | -0.3% | — |
nii_get_connected_components |
6.55 ±0.00 | 6.54 ±0.00 | -0.2% | — |
nii_filter_connected_components |
6.80 ±0.00 | 6.79 ±0.00 | -0.2% | — |
nii_load_img |
3.50 ±0.00 | 3.50 ±0.00 | +0.0% | — |
nii_save |
3.65 ±0.00 | 3.65 ±0.00 | +0.0% | — |
nii_volumes |
3.46 ±0.00 | 3.46 ±0.00 | +0.0% | — |
nii_center_of_masses |
3.21 ±0.00 | 3.21 ±0.00 | +0.0% | — |
poi_reorient |
3.77 ±0.00 | 3.77 ±0.00 | +0.0% | — |
poi_to_global |
3.02 ±0.00 | 3.02 ±0.00 | +0.0% | — |
metric_voxels |
3431.00 ±0.00 | 3431.00 ±0.00 | +0.0% | — |
metric_labels |
3.00 ±0.00 | 3.00 ±0.00 | +0.0% | — |
metric_foreground_pct |
37.60 ±0.00 | 37.60 ±0.00 | +0.0% | — |
nii_get_array |
1.59 ±0.00 | 1.59 ±0.00 | +0.0% (noise) | — |
nii_compute_crop |
2.84 ±0.00 | 2.84 ±0.00 | +0.0% (noise) | — |
nii_unique |
2.90 ±0.00 | 2.90 ±0.00 | +0.0% (noise) | — |
poi_rescale |
2.54 ±0.00 | 2.54 ±0.00 | +0.0% (noise) | — |
poi_local_to_global_arr |
2.89 ±0.00 | 2.89 ±0.00 | +0.0% (noise) | — |
poi_save |
1.34 ±0.00 | 1.34 ±0.00 | +0.0% (noise) | — |
poi_map_labels |
1.71 ±0.00 | 1.71 ±0.00 | +0.0% (noise) | — |
poi_load |
1.55 ±0.00 | 1.55 ±0.00 | +0.0% (noise) | — |
mri_3d — shape (68, 52, 67)
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_rescale_seg |
5.88 ±0.00 | 5.93 ±0.00 | +0.8% | — |
nii_rescale |
6.11 ±0.00 | 6.16 ±0.00 | +0.8% | — |
nii_resample_from_to |
6.23 ±0.00 | 6.28 ±0.00 | +0.8% | — |
nii_erode_msk |
5.88 ±0.00 | 5.85 ±0.00 | -0.5% | — |
poi_resample_from_to |
5.21 ±0.00 | 5.20 ±0.00 | -0.3% | — |
… 31 more measurements
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_set_dtype |
5.24 ±0.00 | 5.23 ±0.00 | -0.3% | — |
nii_pad_to |
5.36 ±0.00 | 5.35 ±0.00 | -0.3% | — |
nii_extract_label |
5.37 ±0.00 | 5.35 ±0.00 | -0.3% | — |
nii_map_labels |
5.43 ±0.00 | 5.41 ±0.00 | -0.3% | — |
nii_apply_crop |
5.80 ±0.00 | 5.79 ±0.00 | -0.3% | — |
nii_reorient |
5.84 ±0.00 | 5.83 ±0.00 | -0.3% | — |
poi_calc_centroids_nocrop |
5.86 ±0.00 | 5.85 ±0.00 | -0.3% | — |
nii_dilate_msk |
5.87 ±0.00 | 5.85 ±0.00 | -0.3% | — |
nii_load_seg |
5.95 ±0.00 | 5.93 ±0.00 | -0.3% | — |
poi_calc_centroids |
5.99 ±0.00 | 5.98 ±0.00 | -0.3% | — |
nii_fill_holes |
6.22 ±0.00 | 6.20 ±0.00 | -0.3% | — |
nii_get_connected_components |
6.55 ±0.00 | 6.54 ±0.00 | -0.2% | — |
nii_filter_connected_components |
6.80 ±0.00 | 6.79 ±0.00 | -0.2% | — |
poi_calc_poi_from_subreg_vert |
7.11 ±0.00 | 7.10 ±0.00 | -0.2% | — |
nii_load_img |
3.56 ±0.00 | 3.56 ±0.00 | +0.0% | — |
nii_save |
3.65 ±0.00 | 3.65 ±0.00 | +0.0% | — |
nii_volumes |
3.46 ±0.00 | 3.46 ±0.00 | +0.0% | — |
nii_center_of_masses |
3.21 ±0.00 | 3.21 ±0.00 | +0.0% | — |
poi_reorient |
3.77 ±0.00 | 3.77 ±0.00 | +0.0% | — |
poi_to_global |
3.02 ±0.00 | 3.02 ±0.00 | +0.0% | — |
metric_voxels |
236912.00 ±0.00 | 236912.00 ±0.00 | +0.0% | — |
metric_labels |
8.00 ±0.00 | 8.00 ±0.00 | +0.0% | — |
metric_foreground_pct |
18.21 ±0.00 | 18.21 ±0.00 | +0.0% | — |
nii_get_array |
1.59 ±0.00 | 1.59 ±0.00 | +0.0% (noise) | — |
nii_compute_crop |
2.84 ±0.00 | 2.84 ±0.00 | +0.0% (noise) | — |
nii_unique |
2.90 ±0.00 | 2.90 ±0.00 | +0.0% (noise) | — |
poi_rescale |
2.54 ±0.00 | 2.54 ±0.00 | +0.0% (noise) | — |
poi_local_to_global_arr |
2.89 ±0.00 | 2.89 ±0.00 | +0.0% (noise) | — |
poi_save |
1.40 ±0.00 | 1.40 ±0.00 | +0.0% (noise) | — |
poi_map_labels |
1.71 ±0.00 | 1.71 ±0.00 | +0.0% (noise) | — |
poi_load |
1.55 ±0.00 | 1.55 ±0.00 | +0.0% (noise) | — |
mri_2d — shape (68, 52, 1)
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_rescale_seg |
5.88 ±0.00 | 5.93 ±0.00 | +0.8% | — |
nii_rescale |
6.11 ±0.00 | 6.16 ±0.00 | +0.8% | — |
nii_resample_from_to |
6.23 ±0.00 | 6.28 ±0.00 | +0.8% | — |
nii_erode_msk |
5.88 ±0.00 | 5.85 ±0.00 | -0.5% | — |
poi_resample_from_to |
5.21 ±0.00 | 5.20 ±0.00 | -0.3% | — |
… 30 more measurements
| Measurement | baseline MiB (median ±½·range) | head MiB (median ±½·range) | Δ % | p |
|---|---|---|---|---|
nii_set_dtype |
5.24 ±0.00 | 5.23 ±0.00 | -0.3% | — |
nii_pad_to |
5.36 ±0.00 | 5.35 ±0.00 | -0.3% | — |
nii_extract_label |
5.37 ±0.00 | 5.35 ±0.00 | -0.3% | — |
nii_map_labels |
5.43 ±0.00 | 5.41 ±0.00 | -0.3% | — |
nii_apply_crop |
5.80 ±0.00 | 5.79 ±0.00 | -0.3% | — |
nii_reorient |
5.84 ±0.00 | 5.83 ±0.00 | -0.3% | — |
nii_dilate_msk |
5.87 ±0.00 | 5.85 ±0.00 | -0.3% | — |
poi_calc_centroids_nocrop |
5.93 ±0.00 | 5.91 ±0.00 | -0.3% | — |
nii_load_seg |
5.95 ±0.00 | 5.93 ±0.00 | -0.3% | — |
poi_calc_centroids |
5.99 ±0.00 | 5.98 ±0.00 | -0.3% | — |
nii_fill_holes |
6.22 ±0.00 | 6.20 ±0.00 | -0.3% | — |
nii_get_connected_components |
6.55 ±0.00 | 6.54 ±0.00 | -0.2% | — |
nii_filter_connected_components |
6.80 ±0.00 | 6.79 ±0.00 | -0.2% | — |
nii_load_img |
3.56 ±0.00 | 3.56 ±0.00 | +0.0% | — |
nii_save |
3.65 ±0.00 | 3.65 ±0.00 | +0.0% | — |
nii_volumes |
3.46 ±0.00 | 3.46 ±0.00 | +0.0% | — |
nii_center_of_masses |
3.21 ±0.00 | 3.21 ±0.00 | +0.0% | — |
poi_reorient |
3.77 ±0.00 | 3.77 ±0.00 | +0.0% | — |
poi_to_global |
3.02 ±0.00 | 3.02 ±0.00 | +0.0% | — |
metric_voxels |
3536.00 ±0.00 | 3536.00 ±0.00 | +0.0% | — |
metric_labels |
7.00 ±0.00 | 7.00 ±0.00 | +0.0% | — |
metric_foreground_pct |
50.17 ±0.00 | 50.17 ±0.00 | +0.0% | — |
nii_get_array |
1.59 ±0.00 | 1.59 ±0.00 | +0.0% (noise) | — |
nii_compute_crop |
2.84 ±0.00 | 2.84 ±0.00 | +0.0% (noise) | — |
nii_unique |
2.90 ±0.00 | 2.90 ±0.00 | +0.0% (noise) | — |
poi_rescale |
2.54 ±0.00 | 2.54 ±0.00 | +0.0% (noise) | — |
poi_local_to_global_arr |
2.89 ±0.00 | 2.89 ±0.00 | +0.0% (noise) | — |
poi_save |
1.40 ±0.00 | 1.40 ±0.00 | +0.0% (noise) | — |
poi_map_labels |
1.71 ±0.00 | 1.71 ±0.00 | +0.0% (noise) | — |
poi_load |
1.55 ±0.00 | 1.55 ±0.00 | +0.0% (noise) | — |
Gate: a measurement fails when the baseline is ≥ 1 MiB, the median grows by ≥ 50%, and Welch's t-test gives p < 0.05. metric_* rows are context only.
No description provided.