Mcmc config #39
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,163 @@ | ||
| /* | ||
| * Copyright (c) 2019 - 2026 Geode-solutions | ||
| * | ||
| * Permission is hereby granted, free of charge, to any person obtaining a copy | ||
| * of this software and associated documentation files (the "Software"), to deal | ||
| * in the Software without restriction, including without limitation the rights | ||
| * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
| * copies of the Software, and to permit persons to whom the Software is | ||
| * furnished to do so, subject to the following conditions: | ||
| * | ||
| * The above copyright notice and this permission notice shall be included in | ||
| * all copies or substantial portions of the Software. | ||
| * | ||
| * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
| * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
| * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
| * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
| * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
| * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
| * SOFTWARE. | ||
| * | ||
| */ | ||
|
|
||
| #pragma once | ||
|
|
||
| #include <geode/stochastic/inference/target_statistics.hpp> | ||
| #include <geode/stochastic/sampling/direct/object_set_sampler/segment_set_sampler.hpp> | ||
| #include <geode/stochastic/sampling/mcmc/helpers/simulation_context.hpp> | ||
| #include <geode/stochastic/sampling/mcmc/simulation_runner.hpp> | ||
|
|
||
| namespace geode | ||
| { | ||
| using Fracture = OwnerSegment2D; | ||
| using FractureSamplerConfig = ObjectSamplerConfig< Fracture >; | ||
| using FractureSimulationContext = SimulationContext< Fracture >; | ||
| using FractureSimulationRunner = SimulationRunner< Fracture >; | ||
|
|
||
| struct FractureSetDescription | ||
| { | ||
| std::string fset_name; | ||
|
|
||
| FractureSamplerConfig sampler; | ||
| double birth_ratio{ 1.0 }; | ||
| double death_ratio{ 1.0 }; | ||
| double change_ratio{ 1.0 }; | ||
|
|
||
| [[nodiscard]] std::string density_name() const | ||
| { | ||
| return absl::StrCat( fset_name, "_p20" ); | ||
| } | ||
| double p20{ 0. }; | ||
| std::optional< double > expected_number; | ||
|
|
||
| [[nodiscard]] std::string intensity_name() const | ||
| { | ||
| return absl::StrCat( fset_name, "_p21" ); | ||
| } | ||
| double p21{ 0. }; | ||
| std::optional< double > expected_total_length; | ||
|
|
||
| std::vector< std::array< geode::Point2D, 2 > > observed_fractures; | ||
|
|
||
| [[nodiscard]] std::string spacing_name() const | ||
| { | ||
| return absl::StrCat( fset_name, "_spacing" ); | ||
| } | ||
| double minimal_spacing{ 0. }; | ||
|
|
||
| [[nodiscard]] std::string string() const | ||
| { | ||
| auto message = | ||
| absl::StrCat( "FractureSetDescription: ", fset_name ); | ||
| for( const auto& fixed_object : observed_fractures ) | ||
| { | ||
| absl::StrAppend( &message, | ||
| "\n\t --> observation (x,y,z)start: ", | ||
| fixed_object[0].string(), | ||
| " (x,y,z)end: ", fixed_object[1].string() ); | ||
| } | ||
| absl::StrAppend( &message, | ||
| "\n\t --> length distribution: ", sampler.length.string() ); | ||
| absl::StrAppend( &message, | ||
| "\n\t --> azimuth distribution: ", sampler.azimuth.string() ); | ||
| absl::StrAppend( &message, "\n\t --> ", density_name(), ": ", p20 ); | ||
| absl::StrAppend( | ||
| &message, "\n\t --> ", intensity_name(), ": ", p21 ); | ||
| absl::StrAppend( | ||
| &message, "\n\t --> ", spacing_name(), ": ", minimal_spacing ); | ||
|
|
||
| absl::StrAppend( &message, | ||
| "\n\t --> dynamic move ratio - birth/death/change (", | ||
| birth_ratio, " / ", death_ratio, " / ", change_ratio, ")" ); | ||
| return message; | ||
| } | ||
| }; | ||
|
|
||
| // struct FractureInterSetDescription | ||
| // { | ||
| // std::string interaction_name; | ||
| // | ||
| // std::vector< std::string > set_names; | ||
| // | ||
| // double gamma{ 1. }; | ||
| // double distance{ 0. }; | ||
| // | ||
| // bool include_intra_set{ true }; | ||
| // bool include_inter_set{ false }; | ||
| // | ||
| // std::optional< double > expected_nb_interactions; | ||
| // }; | ||
|
|
||
| struct opengeode_stochastic_stochastic_api FractureNetworkDescription | ||
| { | ||
| std::string fnet_name; | ||
|
|
||
| SpatialDomainConfig< 2 > domain; | ||
|
|
||
| std::vector< FractureSetDescription > fracture_sets; | ||
|
|
||
| [[nodiscard]] FractureSetDescription& add_fracture_set( | ||
| absl::string_view fset_name ) | ||
| { | ||
| auto& fracture_set = fracture_sets.emplace_back(); | ||
| fracture_set.fset_name = fset_name; | ||
| return fracture_set; | ||
| } | ||
|
|
||
| [[nodiscard]] std::string string() const | ||
| { | ||
| auto message = | ||
| absl::StrCat( "FractureNetworkDescription: ", fnet_name ); | ||
| absl::StrAppend( &message, "\n\t --> ", domain.string() ); | ||
| for( const auto& fset_desc : fracture_sets ) | ||
| { | ||
| absl::StrAppend( &message, "\n\t --> ", fset_desc.string() ); | ||
| } | ||
| return message; | ||
| } | ||
| // std::vector< StraussInteractionDescription< ObjectType > > | ||
| // inter_set_interactions; | ||
| // | ||
| // void add_x_node_monitoring( double beta_x_node ) | ||
| // { | ||
| // OpenGeodeStochasticStochasticException::check_exception( | ||
| // beta_x_node <= 1.0 && beta_x_node >= 0., nullptr, | ||
| // OpenGeodeException::TYPE::data, | ||
| // "[FractureSimulationRunner] x node should be | ||
| // inhibitated, " "please provise a value in [0., 1.]." | ||
| // ); | ||
| // beta_x_node_ = beta_x_node; | ||
| // } | ||
| }; | ||
|
|
||
| opengeode_stochastic_stochastic_api FractureSimulationContext | ||
| build_fractures_simulation_context( | ||
| const FractureNetworkDescription& description ); | ||
|
|
||
| opengeode_stochastic_stochastic_api | ||
| std::vector< geode::TargetStatisticConfig > | ||
| build_fractures_targeted_stat( | ||
| const FractureNetworkDescription& description ); | ||
|
|
||
| } // namespace geode |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,73 @@ | ||
| /* | ||
| * Copyright (c) 2019 - 2026 Geode-solutions | ||
| * | ||
| * Permission is hereby granted, free of charge, to any person obtaining a copy | ||
| * of this software and associated documentation files (the "Software"), to deal | ||
| * in the Software without restriction, including without limitation the rights | ||
| * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell | ||
| * copies of the Software, and to permit persons to whom the Software is | ||
| * furnished to do so, subject to the following conditions: | ||
| * | ||
| * The above copyright notice and this permission notice shall be included in | ||
| * all copies or substantial portions of the Software. | ||
| * | ||
| * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR | ||
| * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, | ||
| * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE | ||
| * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER | ||
| * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, | ||
| * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE | ||
| * SOFTWARE. | ||
| * | ||
| */ | ||
|
|
||
| #pragma once | ||
|
|
||
| #include <geode/stochastic/inference/target_statistics.hpp> | ||
| #include <geode/stochastic/sampling/mcmc/helpers/simulation_context.hpp> | ||
|
|
||
| namespace geode | ||
| { | ||
| template < typename ObjectType > | ||
| struct PoissonSetDescription | ||
| { | ||
| std::string set_name; | ||
|
|
||
| ObjectSamplerConfig< ObjectType > sampler; | ||
|
|
||
| std::string density_name; | ||
| double lambda{ 0. }; | ||
| std::optional< double > expected_nb_objects; | ||
|
|
||
| double birth_ratio{ 1.0 }; | ||
| double death_ratio{ 1.0 }; | ||
| double change_ratio{ 1.0 }; | ||
| }; | ||
|
|
||
| template < typename ObjectType > | ||
| struct PoissonProcessDescription | ||
| { | ||
| std::string process_name{ "Poisson" }; | ||
| SpatialDomainConfig< ObjectType::dim > domain; | ||
|
|
||
| std::vector< PoissonSetDescription< ObjectType > > sets; | ||
|
|
||
| PoissonSetDescription< ObjectType >& add_set( | ||
| absl::string_view set_name ) | ||
| { | ||
| auto& set = sets.emplace_back(); | ||
| set.set_name = set_name; | ||
| set.density_name = absl::StrCat( set_name, "_density" ); | ||
| return set; | ||
| } | ||
| }; | ||
|
|
||
| template < typename ObjectType > | ||
| SimulationContext< ObjectType > build_poisson_process( | ||
| const PoissonProcessDescription< ObjectType >& description ); | ||
|
|
||
| template < typename ObjectType > | ||
| std::vector< geode::TargetStatisticConfig > build_poisson_targeted_stat( | ||
| const PoissonProcessDescription< ObjectType >& description ); | ||
|
|
||
| } // namespace geode |
Oops, something went wrong.
Oops, something went wrong.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Uh oh!
There was an error while loading. Please reload this page.