FlankingSequence #798
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FlankingSequence #798
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This VEP plugin annotates the flanking sequence of a variant with the format "GCCCATCTGTC[G/T]TCTCTCTGATC". Default upstream/downstream length: 10. ```bash ./vep -i input.vcf -o output.vcf -fa hg38.fasta --plugin FlankingSequence,10 --fields FlankingSequence ```
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This VEP plugin annotates the flanking sequence of a variant with the format "GCCCATCTGTC[G/T]TCTCTCTGATC". Default upstream/downstream length: 10.