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updating archive strategy for ptyrex workflow #376

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Merged
fallars merged 2 commits into from
Oct 2, 2026
Merged

updating archive strategy for ptyrex workflow #376

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updating archive strategy for ptyrex workflow, so that artifacts are …
fallars Oct 2, 2026
351a32f
updating print statements
fallars Oct 2, 2026
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12 changes: 9 additions & 3 deletions e02/templates/ptyrex_basic.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -130,14 +130,20 @@ spec:
artifacts:
- name: ptyrex-object-modulus
path: /tmp/object_modulus.jpeg
archive:
none: {}
- name: ptyrex-object-phase
path: /tmp/object_phase.jpeg
archive:
none: {}
- name: ptyrex-probe-modulus
path: /tmp/probe_modulus.jpeg
archive:
none: {}
- name: ptyrex-probe-phase
path: /tmp/probe_phase.jpeg
archive:
none: { }
none: {}
script:
image: gitlab.diamond.ac.uk:5050/scisoft/ptychography/dimtools/mib2x
imagePullPolicy: Always
Expand All @@ -157,7 +163,7 @@ spec:
import numpy as np
from PIL import Image
print('###start of log###')
print('json path: %s' % ("{{`{{workflow.parameters.config_json}}`}}"))
print('Current json path: %s' % ("{{`{{workflow.parameters.config_json}}`}}"))
print('###end of log###')

#find the output path of the recon from loading the json used in the recon
Expand All @@ -175,7 +181,7 @@ spec:
hdf_list = glob.glob(search_string)
hdf_list.sort()
chosen_recon = hdf_list[-1]
print(f'saving this recon to jpeg: {chosen_recon}...')
print(f'converting this recon: {chosen_recon}\ninto jpegs...')

#load obj and probe
with h5py.File(chosen_recon,'r') as f:
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