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@CompOmics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

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  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 247 60

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for peptides carrying any modification.

    Python 80 26

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 66 23

  4. lesSDRF lesSDRF Public

    Spending less time on SDRF creates more time for amazing research

    Jupyter Notebook 10 8

Repositories

Showing 10 of 117 repositories
  • DeepLC Public

    DeepLC: Retention time prediction for peptides carrying any modification.

    CompOmics/DeepLC's past year of commit activity
    Python 80 Apache-2.0 26 1 2 Updated Sep 11, 2026
  • OmicsFM_webview Public

    Interactive OmicsFM maps for proteomics and transcriptomics

    CompOmics/OmicsFM_webview's past year of commit activity
    HTML 0 0 0 0 Updated Sep 11, 2026
  • tabloidProteome Public
    CompOmics/tabloidProteome's past year of commit activity
    HTML 1 Apache-2.0 0 0 3 Updated Sep 11, 2026
  • MuMDIA Public

    Clean-room Rust reimplementation of MuMDIA, a data-independent-acquisition (DIA) proteomics search engine.

    CompOmics/MuMDIA's past year of commit activity
    Rust 4 Apache-2.0 0 0 3 Updated Sep 11, 2026
  • OmicsFM Public
    CompOmics/OmicsFM's past year of commit activity
    Python 4 Apache-2.0 0 0 0 Updated Sep 10, 2026
  • eluflow Public

    A python package for building powerful transformer models for SMILES.

    CompOmics/eluflow's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 8, 2026
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    CompOmics/ms2rescore's past year of commit activity
    Python 66 Apache-2.0 23 14 0 Updated Sep 7, 2026
  • MoDPAv1.0 Public

    MoDPA repository for publication

    CompOmics/MoDPAv1.0's past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Sep 7, 2026
  • Peptonizer2000 Public

    Confidence for taxonomic analysis in metaproteomics. Get ready to peptonize!

    CompOmics/Peptonizer2000's past year of commit activity
    Rust 3 Apache-2.0 0 3 1 Updated Sep 4, 2026
  • IM2Deep Public

    Collisional cross-section prediction for modified and multiconformational peptides

    CompOmics/IM2Deep's past year of commit activity
    Python 14 Apache-2.0 2 0 0 Updated Aug 26, 2026
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