Issues

• map multiple pair-end reads file

  COMBINE-lab/RapMap#48 · Filter by author xiaoyezao opened on Dec 10, 2019

• -u always active, unaligned reads cause parse error in samtools

  COMBINE-lab/RapMap#47 · Filter by author ghost opened on Jun 28, 2019
  2

• mateIsFwd never gets a value set for unpaired hits

  COMBINE-lab/RapMap#46 · Filter by author jenni-westoby opened on Feb 1, 2019
  2

• Please support spdlog 1.2

  COMBINE-lab/RapMap#44 · Filter by author tillea opened on Dec 13, 2018

• Any experiences on using RapMap for downstream variant calling

  COMBINE-lab/RapMap#43 · Filter by author inti opened on Aug 20, 2018

• What is the behavior of quasimapping when reads overlap multiple transcripts?

  COMBINE-lab/RapMap#42 · Filter by author nachocab opened on Jan 23, 2018

• Build time tests are failing on mips64el architecture

  COMBINE-lab/RapMap#41 · Filter by author tillea opened on Jan 22, 2018

• Question: Unassigned Reads

  COMBINE-lab/RapMap#40 · Filter by author Simon-Coetzee opened on Jun 7, 2017

• I'm failing to compile release 0.5

  COMBINE-lab/RapMap#39 · Filter by author darachm opened on Mar 28, 2017
  4

• Quasi-mapping and gene fusion detection

  COMBINE-lab/RapMap#35 · Filter by author tetianakh opened on Nov 7, 2016

• Mapping to repetitive regions

  COMBINE-lab/RapMap#32 · Filter by author mdshw5 opened on Sep 22, 2016
  1

• Figure out how to support a BSD or MIT license

  COMBINE-lab/RapMap#6 · Filter by author rob-p opened on Jul 16, 2015
  3