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add kraken2 special rule into TPV #289

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add kraken2 special rule into TPV #289

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7 changes: 7 additions & 0 deletions templates/galaxy/config/tpv_rules_meta.yml.j2
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Expand Up @@ -62,6 +62,13 @@ tools:
cores: int(job.get_param_values(app)['__job_resource']['cores'])
context:
walltime: "{int(job.get_param_values(app)['__job_resource']['time'])}"
# DEMON: the highmem is not needed in all cases -> need to figure out how to check if needed mem is over 180 GB
toolshed.g2.bx.psu.edu/repos/iuc/kraken2/kraken2/.*:
context:
queue: elixircz
scheduling:
require:
- highmem
toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_annotatebed/.*:
context:
walltime: 48
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