QA1: support running llm_hub tool

.gitignore

@@ -10,4 +10,7 @@
 .vault-password.*
 
 # installed roles
-roles
+roles/*
+
+# this is ours
+!roles/usegalaxy_cz.llm_hub

files/galaxy/config/llm_hub_data_table_conf.xml

@@ -0,0 +1,7 @@
+<!-- Paths are relative to the value of `tool_data_path` in galaxy.ini -->
+<tables>
+    <table name="llm_models" comment_char="#" allow_duplicate_entries="False">
+        <columns>value, name, domain, provider, free_tag</columns>
+        <file path="llm_models.loc" />
+    </table>
+</tables>

galaxy.yml

@@ -207,6 +207,7 @@
     - galaxyproject.tusd
     - usegalaxy_eu.apptainer
     - galaxyproject.galaxy
+    - usegalaxy_cz.llm_hub
     - usegalaxy_eu.tpv_auto_lint
     - geerlingguy.redis
     - role: usegalaxy_eu.flower

group_vars/galaxyservers.yml

@@ -44,6 +44,12 @@ enable_flower: false
 enable_tiaas: true
 shed_tools_shadowing: false
 
+# LLM Hub placeholders; provide real values in secrets.yml
+llm_hub:
+  token: TOKEN
+  endpoint: SOMEWHERE
+
+
 # Galaxy
 galaxy_manage_systemd: no
 galaxy_create_user: true # False by default, as e.g. you might have a 'galaxy' user provided by LDAP or AD.
@@ -184,6 +190,7 @@ galaxy_config:
     tool_data_table_config_path:
     - /cvmfs/data.galaxyproject.org/byhand/location/tool_data_table_conf.xml
     - /cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml
+    - "{{ galaxy_config_dir }}/llm_hub_data_table_conf.xml"
     # Tool Dependencies
     dependency_resolvers: {}
     container_resolvers:
@@ -261,6 +268,8 @@ galaxy_config_files_public:
     dest: "{{ galaxy_server_dir }}/static/eu_msmt_eosc.svg"
   - src: files/galaxy/static/e-infra_logo.svg
     dest: "{{ galaxy_server_dir }}/static/e-infra_logo.svg"
+  - src: files/galaxy/config/llm_hub_data_table_conf.xml
+    dest: "{{ galaxy_config_dir }}/llm_hub_data_table_conf.xml"
 
 galaxy_config_templates:
   - src: templates/galaxy/config/reports.yml.j2
@@ -279,6 +288,8 @@ galaxy_config_templates:
     dest: "{{ galaxy_config_dir }}/file_source_templates.yml"
   - src: "{{ lookup('first_found', ['templates/'+inventory_hostname+'/config/auth_conf.xml.j2', 'templates/galaxy/config/auth_conf.xml.j2']) }}"
     dest: "{{ galaxy_config.galaxy.auth_config_file }}"
+  - src: templates/galaxy/config/llm_hub_config.yaml
+    dest: "{{ galaxy_config_dir }}/llm_hub_config.yaml"
 
 galaxy_local_tools:
   - testing.xml

roles/usegalaxy_cz.llm_hub/README.md

@@ -0,0 +1,26 @@
+Role Name
+=========
+
+Configure support for LLM Hub tool
+
+Requirements
+------------
+
+Role Variables
+--------------
+
+Dependencies
+------------
+
+Example Playbook
+----------------
+
+
+License
+-------
+
+MIT
+
+Author Information
+------------------
+

roles/usegalaxy_cz.llm_hub/defaults/main.yml

@@ -0,0 +1,3 @@
+#SPDX-License-Identifier: MIT-0
+---
+# defaults file for usegalaxy_cz.llm_hub

roles/usegalaxy_cz.llm_hub/handlers/main.yml

@@ -0,0 +1,3 @@
+#SPDX-License-Identifier: MIT-0
+---
+# handlers file for usegalaxy_cz.llm_hub

roles/usegalaxy_cz.llm_hub/meta/main.yml

@@ -0,0 +1,34 @@
+#SPDX-License-Identifier: MIT-0
+galaxy_info:
+  author: Ales Krenek
+  description: configure support for llm hub tool
+  company: CESNET
+
+  # If the issue tracker for your role is not on github, uncomment the
+  # next line and provide a value
+  # issue_tracker_url: http://example.com/issue/tracker
+
+  # Choose a valid license ID from https://spdx.org - some suggested licenses:
+  # - BSD-3-Clause (default)
+  # - MIT
+  # - GPL-2.0-or-later
+  # - GPL-3.0-only
+  # - Apache-2.0
+  # - CC-BY-4.0
+  license: MIT
+  min_ansible_version: 2.1
+
+  # If this a Container Enabled role, provide the minimum Ansible Container version.
+  # min_ansible_container_version:
+
+  galaxy_tags: []
+    # List tags for your role here, one per line. A tag is a keyword that describes
+    # and categorizes the role. Users find roles by searching for tags. Be sure to
+    # remove the '[]' above, if you add tags to this list.
+    #
+    # NOTE: A tag is limited to a single word comprised of alphanumeric characters.
+    #       Maximum 20 tags per role.
+
+dependencies: []
+  # List your role dependencies here, one per line. Be sure to remove the '[]' above,
+  # if you add dependencies to this list.

roles/usegalaxy_cz.llm_hub/tasks/main.yml

@@ -0,0 +1,22 @@
+---
+
+- name: Retrieve current list of LLMs
+  delegate_to: localhost
+  shell: |
+    echo '#<model_id>	<display_name>	<domain>	<provider>	<free_tag>' > "files/{{ inventory_hostname }}/llm_models.loc" && \
+    curl -H "Authorization: Bearer {{ llm_hub.token }}" "{{ llm_hub.endpoint }}/models" | \
+    jq -r --arg re "^({{ multimodals | join('|') }})" \
+      '.data[].id | if test($re) then [.,.,"multimodal","CERIT-SC","tag"] else [.,.,"text","CERIT-SC","tag"] end | @tsv' \
+      >> files/{{ inventory_hostname }}/llm_models.loc
+  become: false
+
+- name: Install the list of LLMs
+  copy:
+    src: "files/{{ inventory_hostname }}/llm_models.loc"
+    dest: "{{ galaxy_tool_data_path }}/llm_models.loc"
+
+- name: Install specific local dependencies
+  pip:
+    name: openai
+    virtualenv: "{{ galaxy_venv_dir }}"
+

roles/usegalaxy_cz.llm_hub/tests/inventory

@@ -0,0 +1,3 @@
+#SPDX-License-Identifier: MIT-0
+localhost
+

roles/usegalaxy_cz.llm_hub/tests/test.yml

@@ -0,0 +1,6 @@
+#SPDX-License-Identifier: MIT-0
+---
+- hosts: localhost
+  remote_user: root
+  roles:
+    - usegalaxy_cz.llm_hub

roles/usegalaxy_cz.llm_hub/vars/main.yml

@@ -0,0 +1,12 @@
+#SPDX-License-Identifier: MIT-0
+---
+# vars file for usegalaxy_cz.llm_hub
+
+multimodals:
+- llama
+- qwen
+- nomic
+- kimi
+- mistral
+- deepseek
+- glm

templates/galaxy/config/llm_hub_config.yaml

@@ -0,0 +1,2 @@
+LITELLM_API_KEY: "{{ llm_hub.token }}"
+LITELLM_BASE_URL: "{{ llm_hub.endpoint }}"

templates/galaxy/config/tpv_rules_meta.yml.j2

@@ -159,6 +159,11 @@ tools:
     scheduling:
       require:
         - alphafold
+  toolshed.g2.bx.psu.edu/repos/bgruening/llm_hub/llm_hub/.*:
+    inherits: local_running_tools
+    env:
+      LITELLM_CONFIG_FILE: "{{ galaxy_config_dir }}/llm_hub_config.yaml"
+
 
 roles:
   training.*: