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Updates for new GitHub organization #2

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4 changes: 2 additions & 2 deletions INSTALL.md
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Expand Up @@ -5,7 +5,7 @@
* [BWA-mem](http://bio-bwa.sourceforge.net/) v0.7.12
* [GMAP](http://research-pub.gene.com/gmap/) 2014-12-28
* [samtools](http://samtools.sourceforge.net/) v0.1.19
* [BBT](http://www.bcgsc.ca/platform/bioinfo/software/biobloomtools) v3.0.0b (required) (if TAP is run in targeted mode)
* [BBT](https://github.com/BirolLab/biobloom) v3.0.0b (required) (if TAP is run in targeted mode)

*tested versions indicated, may not be the most recent version. For BBT, v3.0.0b is required.

Expand Down Expand Up @@ -57,7 +57,7 @@ If running TAP, after installation of PVT(below) full paths of the above referen
2. ```virtualenv <DIR>```
3. ```source <DIR>/bin/activate```
4. ```pip install -U cython```
5. ```pip install git+https://github.com/bcgsc/pavfinder_transcriptome.git#egg=pavfinder_transcriptome```
5. ```pip install git+https://github.com/BirolLab/pavfinder_transcriptome.git#egg=pavfinder_transcriptome```

After successful installation, the following will be available in different sub-directories under the virtualenv directory:

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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -16,7 +16,7 @@ As such, a pipeline that bundles the 3 analysis steps called **TAP** (**T**ransa
* [BWA-mem](http://bio-bwa.sourceforge.net/)
* [GMAP](http://research-pub.gene.com/gmap/)
* [samtools](http://samtools.sourceforge.net/)
* [BBT](http://www.bcgsc.ca/platform/bioinfo/software/biobloomtools) (if TAP is run in targeted mode)
* [BBT](https://github.com/BirolLab/biobloom) (if TAP is run in targeted mode)

2. Reference files

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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -7,7 +7,7 @@
version=__version__,
description='Post Assembly Variant Finder - transcriptome',
long_description='Identifies transcriptomic structural variants from sequence assembly',
url='https://github.com/bcgsc/pavfinder_transcriptome.git',
url='https://github.com/BirolLab/pavfinder_transcriptome.git',
author='Readman Chiu',
author_email='rchiu@bcgsc.ca',
license='BCCA',
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