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Merged
amandazhuyilan merged 2 commits into from
Jul 7, 2026
Merged

Sync dev with staging #2

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35201b3
chore: repoint remaining ziadbkh identifiers (nf-core org, report IDs…
amandazhuyilan Jul 7, 2026
abcbbcb
Merge pull request #1 from AustralianBioCommons/chore/repoint-remaini…
amandazhuyilan Jul 7, 2026
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2 changes: 1 addition & 1 deletion .nf-core.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@ template:
force: true
is_nfcore: false
name: bindflow
org: ziadbkh
org: AustralianBioCommons
outdir: .
skip_features:
- igenomes
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2 changes: 1 addition & 1 deletion assets/methods_description_template.yml
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@@ -1,4 +1,4 @@
id: "ziadbkh-bindflow-methods-description"
id: "sbp-bindflow-methods-description"
description: "Suggested text and references to use when describing pipeline usage within the methods section of a publication."
section_name: "AustralianBioCommons/sbp-bindflow Methods Description"
section_href: "https://github.com/AustralianBioCommons/sbp-bindflow"
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4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
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Expand Up @@ -2,11 +2,11 @@ report_comment: >
This report has been generated by the <a href="https://github.com/AustralianBioCommons/sbp-bindflow/tree/dev" target="_blank">AustralianBioCommons/sbp-bindflow</a>
analysis pipeline.
report_section_order:
"ziadbkh-bindflow-methods-description":
"sbp-bindflow-methods-description":
order: -1000
software_versions:
order: -1001
"ziadbkh-bindflow-summary":
"sbp-bindflow-summary":
order: -1002

export_plots: true
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6 changes: 3 additions & 3 deletions assets/sendmail_template.txt
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Expand Up @@ -9,12 +9,12 @@ Content-Type: text/html; charset=utf-8
$email_html

--nfcoremimeboundary
Content-Type: image/png;name="ziadbkh-bindflow_logo.png"
Content-Type: image/png;name="sbp-bindflow_logo.png"
Content-Transfer-Encoding: base64
Content-ID: <nfcorepipelinelogo>
Content-Disposition: inline; filename="ziadbkh-bindflow_logo_light.png"
Content-Disposition: inline; filename="sbp-bindflow_logo_light.png"

<% out << new File("$projectDir/assets/ziadbkh-bindflow_logo_light.png").
<% out << new File("$projectDir/assets/sbp-bindflow_logo_light.png").
bytes.
encodeBase64().
toString().
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