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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 41 10

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 26 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 696 repositories
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging's past year of commit activity
    C# 0 MIT 0 27 2 Updated Sep 14, 2026
  • aind-ephys-preprocessing Public

    CodeOcean capsule for ephys preprocessing

    AllenNeuralDynamics/aind-ephys-preprocessing's past year of commit activity
    Python 2 MIT 3 3 0 Updated Sep 14, 2026
  • harp.core.pico Public Forked from harp-tech/core.pico

    A Harp core implementation on the RP2040

    AllenNeuralDynamics/harp.core.pico's past year of commit activity
    C++ 0 MIT 3 2 1 Updated Sep 14, 2026
  • aind-hcr-pairwise-unmixing-calibrated Public

    Calibrated pairwise crosstalk removal for thick-tissue HCR spot tables. Standalone; does not modify aind-spot-spectral-unmixing.

    AllenNeuralDynamics/aind-hcr-pairwise-unmixing-calibrated's past year of commit activity
    Python 0 MIT 0 2 0 Updated Sep 14, 2026
  • AllenNeuralDynamics/LC-beh-physiology-analysis's past year of commit activity
    Jupyter Notebook 1 MIT 1 3 1 Updated Sep 14, 2026
  • aind-ephys-spikesort-kilosort4 Public

    CodeOcean capsule for ephys spike sorting with Kilosort4

    AllenNeuralDynamics/aind-ephys-spikesort-kilosort4's past year of commit activity
    Python 3 MIT 5 2 0 Updated Sep 14, 2026
  • ctl-coding-clustering Public

    CTL FNN coding score and clustering pipeline (Garrett 2026)

    AllenNeuralDynamics/ctl-coding-clustering's past year of commit activity
    Python 0 0 0 0 Updated Sep 14, 2026
  • AIND-ophys-mFISH-GLM Public

    GLM for ophys-mFISH datasets from AIND

    AllenNeuralDynamics/AIND-ophys-mFISH-GLM's past year of commit activity
    Python 0 MIT 0 7 0 Updated Sep 14, 2026
  • Aind.Behavior.Device.Olfactometer Public

    A repository for calibration and configuration of the harp olfactometer device

    AllenNeuralDynamics/Aind.Behavior.Device.Olfactometer's past year of commit activity
    C# 1 MIT 1 3 0 Updated Sep 14, 2026
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging's past year of commit activity
    C# 3 MIT 0 8 3 Updated Sep 14, 2026