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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 163

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 511 repositories
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 29 (1 issue needs help) 0 Updated Sep 16, 2026
  • neuroanalysis Public

    Modular analysis tools for neurophysiology data

    AllenInstitute/neuroanalysis's past year of commit activity
    Python 9 MIT 11 1 2 Updated Sep 15, 2026
  • cell_type_constellations Public Forked from danielsf/cell_type_constellations

    Prototype utilities for creating constellation plots based on cell type taxonomies.

    AllenInstitute/cell_type_constellations's past year of commit activity
    Jupyter Notebook 2 2 0 0 Updated Sep 15, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 21 BSD-3-Clause 10 63 8 Updated Sep 15, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 287 5 Updated Sep 15, 2026
  • bmtk Public

    Brain Modeling Toolkit

    AllenInstitute/bmtk's past year of commit activity
    Python 335 BSD-3-Clause 102 68 9 Updated Sep 15, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis's past year of commit activity
    TypeScript 10 BSD-3-Clause 1 14 17 Updated Sep 15, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 408 0 1 Updated Sep 15, 2026
  • zarr-vectors-tools Public

    Tools and workflows based on the zarr-vectors-py API.

    AllenInstitute/zarr-vectors-tools's past year of commit activity
    Python 6 0 0 0 Updated Sep 15, 2026
  • zarr-vectors-py Public

    Utilties and tools for working with data in the Zarr-vectors data structure

    AllenInstitute/zarr-vectors-py's past year of commit activity
    Python 5 BSD-3-Clause 2 0 0 Updated Sep 15, 2026
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