diff --git a/snakemake_interface_software_deployment_plugins/__init__.py b/snakemake_interface_software_deployment_plugins/__init__.py index 932c44d..808e084 100644 --- a/snakemake_interface_software_deployment_plugins/__init__.py +++ b/snakemake_interface_software_deployment_plugins/__init__.py @@ -1,3 +1,4 @@ +from collections.abc import Set import tempfile import os @@ -203,6 +204,7 @@ def __init__( settings, shell_executable: ShellExecutable, mountpoints: List[Path], + envvars: Set[str], tempdir: Path, cache_prefix: Path, deployment_prefix: Path, @@ -214,6 +216,7 @@ def __init__( self.settings = settings self.shell_executable = shell_executable self.mountpoints = [mountpoint.absolute() for mountpoint in mountpoints] + self.envvars = envvars self.tempdir = tempdir self._deployment_prefix: Path = deployment_prefix self._cache_prefix: Path = cache_prefix