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It is built around a hybrid Particle In Cell (PIC) solver, running on Graphics Processing Units. More informations on https://menura.readthedocs.io", + "topics": [ + "plasma", + "simulation", + "solar wind", + "turbulence" + ] + }, + { + "uid": "gitlab/libreumg/dataquier", + "url": "https://gitlab.com/libreumg/dataquier", + "rel": "/software/repository/gitlab/libreumg/dataquier", + "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14144828/logo_ship.png", + "description": "", + "topics": [] + }, + { + "uid": "gitlab/picos-api/picos", + "url": "https://gitlab.com/picos-api/picos", + "rel": "/software/repository/gitlab/picos-api/picos", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7353603/logo.png", + "description": "A Python interface to conic optimization solvers.", + "topics": [ + "math", + "optimization", + "python" + ] + }, + { + "uid": "gitlab/aegge/comet-emu", + "url": "https://gitlab.com/aegge/comet-emu", + "rel": "/software/repository/gitlab/aegge/comet-emu", "avatar": "https://gitlab.comNone", - "description": "C++ nearest neighbour regularized stokeslets", + "description": null, "topics": [] }, { @@ -56,182 +102,202 @@ "topics": [] }, { - "uid": "gitlab/qc-devs/aqcnes", - "url": "https://gitlab.com/qc-devs/aqcnes", - "rel": "/software/repository/gitlab/qc-devs/aqcnes", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/60711361/ThermalExpansion_Subdomain.png", - "description": "Mirror of https://gitlab.ethz.ch/mechanics-and-materials/aqcnes/", + "uid": "gitlab/djsmithbham/cnearest", + "url": "https://gitlab.com/djsmithbham/cnearest", + "rel": "/software/repository/gitlab/djsmithbham/cnearest", + "avatar": "https://gitlab.comNone", + "description": "C++ nearest neighbour regularized stokeslets", "topics": [] }, { - "uid": "gitlab/multigris/mgris", - "url": "https://gitlab.com/multigris/mgris", - "rel": "/software/repository/gitlab/multigris/mgris", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/34419388/multigris_small.png", - "description": "MULTIGRIS (\"mgris\") is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables.", - "topics": [ - "Bayesian statistics", - "astrophysics", - "grid", - "mcmc", - "modelling" - ] + "uid": "gitlab/metafundev/metafun", + "url": "https://gitlab.com/metafundev/metafun", + "rel": "/software/repository/gitlab/metafundev/metafun", + "avatar": "https://gitlab.comNone", + "description": "", + "topics": [] }, { - "uid": "gitlab/chaver/choco-mining", - "url": "https://gitlab.com/chaver/choco-mining", - "rel": "/software/repository/gitlab/chaver/choco-mining", + "uid": "gitlab/mainlabwsu/bims", + "url": "https://gitlab.com/mainlabwsu/bims", + "rel": "/software/repository/gitlab/mainlabwsu/bims", "avatar": "https://gitlab.comNone", - "description": "Data mining with Choco solver", + "description": "BIMS", + "topics": [] + }, + { + "uid": "gitlab/felics-group/FELiCS", + "url": "https://gitlab.com/felics-group/FELiCS", + "rel": "/software/repository/gitlab/felics-group/FELiCS", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/76774034/android-chrome-192x192.png?v=1787837962", + "description": "FELiCS - The linear flow solver. \r\n\r\nDeveloped at the Institute for Fluid Dynamics and Technical Acoustics at TU Berlin, FELiCS is an open-source simulation code designed for researchers and engineers tackling complex flow problems. 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It uses mpi and openmp parallelism.", "topics": [] }, { - "uid": "gitlab/rki_bioinformatics/IDeFIX", - "url": "https://gitlab.com/rki_bioinformatics/IDeFIX", - "rel": "/software/repository/gitlab/rki_bioinformatics/IDeFIX", + "uid": "gitlab/mcfuman/SpectraPy", + "url": "https://gitlab.com/mcfuman/SpectraPy", + "rel": "/software/repository/gitlab/mcfuman/SpectraPy", "avatar": "https://gitlab.comNone", - "description": "Index checking for improved demultiplexing of NGS data", + "description": "Python module to extract and reduce astronomical spectral data", "topics": [] }, { - "uid": "gitlab/rki_bioinformatics/purple", - "url": "https://gitlab.com/rki_bioinformatics/purple", - "rel": "/software/repository/gitlab/rki_bioinformatics/purple", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/11392663/Purple_128.png", - "description": "Picking Unique Relevant Peptides for viraL Experiments\r\n\r\nAuthors: Johanna Lechner [@LechnerJ], Pauline Hiortand Felix Hartkopf [@HartkopfF]\r\n\r\nSupport: https://gitlab.com/HartkopfF/Purple\r\n\r\nDownload: https://gitlab.com/HartkopfF/Purple/releases", - "topics": [] + "uid": "gitlab/multigris/mgris", + "url": "https://gitlab.com/multigris/mgris", + "rel": "/software/repository/gitlab/multigris/mgris", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/34419388/multigris_small.png", + "description": "MULTIGRIS (\"mgris\") is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables.", + "topics": [ + "Bayesian statistics", + "astrophysics", + "grid", + "mcmc", + "modelling" + ] }, { - "uid": "gitlab/rki_bioinformatics/HiLive2", - "url": "https://gitlab.com/rki_bioinformatics/HiLive2", - "rel": "/software/repository/gitlab/rki_bioinformatics/HiLive2", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7428486/hilive2_logo.png", - "description": "HiLive2 is a read mapping tool that maps Illumina HiSeq (or comparable) reads right in the moment when they are produced. Please create issues for HiLive2 at https://gitlab.com/lokat/HiLive2.", + "uid": "gitlab/mule-tools/package-x", + "url": "https://gitlab.com/mule-tools/package-x", + "rel": "/software/repository/gitlab/mule-tools/package-x", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/37935976/PackageXIcon.png", + "description": "A re-publication of [Package-X](http://web.archive.org/web/20220619174704/packagex.hepforge.org/). All credit to Hiren Patel!", "topics": [] }, { - "uid": "gitlab/jtagusari/hrisk-noisemodelling", - "url": "https://gitlab.com/jtagusari/hrisk-noisemodelling", - "rel": "/software/repository/gitlab/jtagusari/hrisk-noisemodelling", - "avatar": "https://gitlab.comNone", - "description": null, + "uid": "gitlab/project-dare/dare-platform", + "url": "https://gitlab.com/project-dare/dare-platform", + "rel": "/software/repository/gitlab/project-dare/dare-platform", + "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14873006/dare.png", + "description": "", "topics": [] }, { - "uid": "gitlab/sevecekp/sph", - "url": "https://gitlab.com/sevecekp/sph", - "rel": "/software/repository/gitlab/sevecekp/sph", + "uid": "gitlab/remikz/nccmp", + "url": "https://gitlab.com/remikz/nccmp", + "rel": "/software/repository/gitlab/remikz/nccmp", "avatar": "https://gitlab.comNone", - "description": "Library and graphical tools for running SPH and N-body simulations.", - "topics": [ - "SPH", - "nbody", - "opensph", - "simulation" - ] + "description": "nccmp - Compare 2 NetCDF files. ", + "topics": [] }, { - "uid": "gitlab/random-quintessence/random-quintessence", - "url": "https://gitlab.com/random-quintessence/random-quintessence", - "rel": "/software/repository/gitlab/random-quintessence/random-quintessence", + "uid": "gitlab/jerrytheo16/exoplanet", + "url": "https://gitlab.com/jerrytheo16/exoplanet", + "rel": "/software/repository/gitlab/jerrytheo16/exoplanet", "avatar": "https://gitlab.comNone", - "description": null, + "description": "Desktop-based application to aid in constructing a machine learning model for predictive analysis. The application further allows the model to be evaluated through statistical results and interactive graphs.", "topics": [] }, { - "uid": "gitlab/groimp-plugins/Pointcloud", - "url": "https://gitlab.com/groimp-plugins/pointcloud", - "rel": "/software/repository/gitlab/groimp-plugins/Pointcloud", - "avatar": "https://gitlab.comNone", - "description": null, + "uid": "gitlab/clairedavies/sedbys", + "url": "https://gitlab.com/clairedavies/sedbys", + "rel": "/software/repository/gitlab/clairedavies/sedbys", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19428398/sedbys_logo.jpg", + "description": "A python-based spectral energy distribution builder for young stars", "topics": [] }, { @@ -374,27 +417,42 @@ ] }, { - "uid": "gitlab/morikawa-lab-osakau/vibir-parallel-compute", - "url": "https://gitlab.com/morikawa-lab-osakau/vibir-parallel-compute", - "rel": "/software/repository/gitlab/morikawa-lab-osakau/vibir-parallel-compute", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58824042/logo.png", - "description": "A HPC-ready parallelized implementation of Vibration and Infrared computations from DFT simulations.\r\n\r\nhttps://morikawa-lab-osakau.gitlab.io/vibir-parallel-compute", - "topics": [] - }, - { - "uid": "gitlab/andreas.andrusch/paipline", - "url": "https://gitlab.com/andreas.andrusch/paipline", - "rel": "/software/repository/gitlab/andreas.andrusch/paipline", - "avatar": "https://gitlab.comNone", - "description": "Pipeline for the Automatic Identification of Pathogens", - "topics": [] + "uid": "gitlab/jason-rumengan/pyarma", + "url": "https://gitlab.com/jason-rumengan/pyarma", + "rel": "/software/repository/gitlab/jason-rumengan/pyarma", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/22728285/pyarma_logo1.png", + "description": "PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io", + "topics": [ + "BLAS", + "C++", + "LAPACK", + "Linear Algebra", + "MATLAB", + "Python", + "Scientifc Computing" + ] }, { - "uid": "gitlab/dsbowen/conditional-inference", - "url": "https://gitlab.com/dsbowen/conditional-inference", - "rel": "/software/repository/gitlab/dsbowen/conditional-inference", + "uid": "gitlab/pipe3d/pyPipe3D", + "url": "https://gitlab.com/pipe3d/pyPipe3D", + "rel": "/software/repository/gitlab/pipe3d/pyPipe3D", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/26080505/pyPipe3D_colorido_avatar.png", + "description": "pyPipe3D is a spectroscopy analysis pipeline which produces coherent, easy to distribute and compare, parameters of the stellar populations and the ionized gas, suited in particular for data from the most recent optical IFS surveys.", + "topics": [ + "ifs", + "ionized gas", + "ism", + "spectroscopy", + "stellar population synthesis", + "techniques" + ] + }, + { + "uid": "gitlab/MartinBeseda/sa-oo-vqe-qiskit", + "url": "https://gitlab.com/MartinBeseda/sa-oo-vqe-qiskit", + "rel": "/software/repository/gitlab/MartinBeseda/sa-oo-vqe-qiskit", "avatar": "https://gitlab.comNone", - "description": null, + "description": "Qiskit version of SA-OO-VQE", "topics": [] }, { @@ -406,107 +464,21 @@ "topics": [] }, { - "uid": "gitlab/picos-api/picos", - "url": "https://gitlab.com/picos-api/picos", - "rel": "/software/repository/gitlab/picos-api/picos", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7353603/logo.png", - "description": "A Python interface to conic optimization solvers.", - "topics": [ - "math", - "optimization", - "python" - ] - }, - { - "uid": "gitlab/remram44/taguette", - "url": "https://gitlab.com/remram44/taguette", - "rel": "/software/repository/gitlab/remram44/taguette", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/8339211/taguette.png", - "description": "Free and open source qualitative research tool", - "topics": [ - "document", - "hacktoberfest", - "highlights", - "notes", - "qual", - "qualitative", - "research", - "tagging", - "tags", - "text" - ] - }, - { - "uid": "gitlab/gpagano/lensinggw", - "url": "https://gitlab.com/gpagano/lensinggw", - "rel": "/software/repository/gitlab/gpagano/lensinggw", - "avatar": "https://gitlab.comNone", - "description": null, - "topics": [ - "lensing of gravitational waves" - ] - }, - { - "uid": "gitlab/bu_cnio/vulcanspot", - "url": "https://gitlab.com/bu_cnio/vulcanspot", - "rel": "/software/repository/gitlab/bu_cnio/vulcanspot", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12800427/logo.png", - "description": "", - "topics": [] - }, - { - "uid": "gitlab/mbiagetti/persistent_homology_lss", - "url": "https://gitlab.com/mbiagetti/persistent_homology_lss", - "rel": "/software/repository/gitlab/mbiagetti/persistent_homology_lss", - "avatar": "https://gitlab.comNone", - "description": "Analyze halo catalogs using persistent homology to constrain cosmological parameters", - "topics": [ - "Dark Matter Halos", - "Galaxy Surveys", - "Nbody Simulations", - "Persistent Homology", - "Primordial non-Gaussianity", - "Topological Data Analysis", - "cosmology" - ] - }, - { - "uid": "gitlab/David_Haegele/line_racer", - "url": "https://gitlab.com/David_Haegele/line_racer", - "rel": "/software/repository/gitlab/David_Haegele/line_racer", - "avatar": "https://gitlab.comNone", - "description": null, - "topics": [] - }, - { - "uid": "gitlab/moerman1/fhi-cc4s", - "url": "https://gitlab.com/moerman1/fhi-cc4s", - "rel": "/software/repository/gitlab/moerman1/fhi-cc4s", - "avatar": "https://gitlab.comNone", - "description": "This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations (FHI-aims) and the Coupled Cluster for Solids (CC4S) code developed by Felix Hummel and Adreas Grueneis at the TU Wien. \r\n", + "uid": "gitlab/pythia-uq/pythia", + "url": "https://gitlab.com/pythia-uq/pythia", + "rel": "/software/repository/gitlab/pythia-uq/pythia", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45854627/logo_small.png", + "description": "PyThia Uncertainty Quantification Toolbox", "topics": [] }, { - "uid": "gitlab/sunpeek/sunpeek", - "url": "https://gitlab.com/sunpeek/sunpeek", - "rel": "/software/repository/gitlab/sunpeek/sunpeek", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/43333900/favicon.png", - "description": "Please see the README for an overview of the project, or here for software documentation: https://docs.sunpeek.org", + "uid": "gitlab/morikawa-lab-osakau/vibir-parallel-compute", + "url": "https://gitlab.com/morikawa-lab-osakau/vibir-parallel-compute", + "rel": "/software/repository/gitlab/morikawa-lab-osakau/vibir-parallel-compute", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58824042/logo.png", + "description": "A HPC-ready parallelized implementation of Vibration and Infrared computations from DFT simulations.\r\n\r\nhttps://morikawa-lab-osakau.gitlab.io/vibir-parallel-compute", "topics": [] }, - { - "uid": "gitlab/loic.cg.rossi/pymiedap", - "url": "https://gitlab.com/loic.cg.rossi/pymiedap", - "rel": "/software/repository/gitlab/loic.cg.rossi/pymiedap", - "avatar": "https://gitlab.comNone", - "description": "PyMieDAP = Python Mie Doubling Adding Program. A radiative transfer code with polarization.", - "topics": [ - "astronomy", - "atmospheres", - "polarization", - "radiative transfer" - ] - }, { "uid": "gitlab/permafrostnet/teaspoon", "url": "https://gitlab.com/permafrostnet/teaspoon", @@ -520,61 +492,51 @@ ] }, { - "uid": "gitlab/robizzard/libcdict", - "url": "https://gitlab.com/rob.izzard/libcdict", - "rel": "/software/repository/gitlab/robizzard/libcdict", + "uid": "gitlab/casi-project/casi-3d", + "url": "https://gitlab.com/casi-project/casi-3d", + "rel": "/software/repository/gitlab/casi-project/casi-3d", "avatar": "https://gitlab.comNone", - "description": "A generic associative array, also know as dictionary or hash, library in C, based on uthash and extended to be more user friendly and include integration features such as JSON output.", + "description": null, "topics": [] }, { - "uid": "gitlab/pyFBS/pyFBS", - "url": "https://gitlab.com/pyFBS/pyFBS", - "rel": "/software/repository/gitlab/pyFBS/pyFBS", + "uid": "gitlab/casi-project/casi-2d", + "url": "https://gitlab.com/casi-project/casi-2d", + "rel": "/software/repository/gitlab/casi-project/casi-2d", "avatar": "https://gitlab.comNone", - "description": "A Python package for Frequency Based Substructuring and Transfer Path Analysis", - "topics": [ - "3D Viewer", - "FRF synthetisation", - "MCK model", - "System Equivalent Modal Mixing", - "Virtual Point Transformation" - ] + "description": "Identification of stellar feedback signatures in simulated molecular clouds using methods from deep learning.", + "topics": [] }, { - "uid": "gitlab/paulklemm_PHD/proteinortho", - "url": "https://gitlab.com/paulklemm_PHD/proteinortho", - "rel": "/software/repository/gitlab/paulklemm_PHD/proteinortho", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7278443/icon4.png", - "description": "Proteinortho is a tool to detect orthologous genes within different species. [(Download)](https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/master/proteinortho-master.tar.gz)", - "topics": [ - "bioinformatics", - "orthology", - "orthology inference" - ] + "uid": "gitlab/robizzard/libcdict", + "url": "https://gitlab.com/rob.izzard/libcdict", + "rel": "/software/repository/gitlab/robizzard/libcdict", + "avatar": "https://gitlab.comNone", + "description": "A generic associative array, also know as dictionary or hash, library in C, based on uthash and extended to be more user friendly and include integration features such as JSON output.", + "topics": [] }, { - "uid": "gitlab/aceteam.kaist/ACE-Molecule", - "url": "https://gitlab.com/aceteam.kaist/ACE-Molecule", - "rel": "/software/repository/gitlab/aceteam.kaist/ACE-Molecule", + "uid": "gitlab/binary_c/binary_c-python", + "url": "https://gitlab.com/binary_c/binary_c-python", + "rel": "/software/repository/gitlab/binary_c/binary_c-python", "avatar": "https://gitlab.comNone", - "description": "GitLab repository for ACE-Molecule.", + "description": "Python module to interface with the binary_c stellar population framework.\r\n\r\nThe current stable branch is 1.0.0 which you can find in the [releases/1.0.0/2.2.4 branch](https://gitlab.com/binary_c/binary_c-python/-/tree/releases/1.0.0/2.2.4) which works with [binary_c version 2.2.4](https://gitlab.com/binary_c/binary_c/-/tree/development/2.2.4)", "topics": [] }, { - "uid": "gitlab/cosapp/cosapp", - "url": "https://gitlab.com/cosapp/cosapp", - "rel": "/software/repository/gitlab/cosapp/cosapp", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19967329/cosapp_web.png", - "description": "CoSApp core package", + "uid": "gitlab/vda-lab/snowflake", + "url": "https://gitlab.com/vda-lab/snowflake", + "rel": "/software/repository/gitlab/vda-lab/snowflake", + "avatar": "https://gitlab.comNone", + "description": null, "topics": [] }, { - "uid": "gitlab/wpettersson/kep_solver", - "url": "https://gitlab.com/wpettersson/kep_solver", - "rel": "/software/repository/gitlab/wpettersson/kep_solver", - "avatar": "https://gitlab.comNone", - "description": "A Python package for reading and solving single instances of kidney exchange problems. ", + "uid": "gitlab/vibes-developers/vibes", + "url": "https://gitlab.com/vibes-developers/vibes", + "rel": "/software/repository/gitlab/vibes-developers/vibes", + "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/19053725/FV_green.png", + "description": "[FHI-vibes](https://vibes-developers.gitlab.io/vibes/): Vibrational simulations with python powered by ASE and FHI-aims.", "topics": [] }, { @@ -586,230 +548,192 @@ "topics": [] }, { - "uid": "gitlab/BioimageInformaticsGroup/openphi", - "url": "https://gitlab.com/BioimageInformaticsGroup/openphi", - "rel": "/software/repository/gitlab/BioimageInformaticsGroup/openphi", - "avatar": "https://gitlab.comNone", - "description": "Open PatHology Interface - A Python API for accessing iSyntax digital pathology images", - "topics": [] - }, - { - "uid": "gitlab/vincent-sater/umigen", - "url": "https://gitlab.com/vincent-sater/umigen", - "rel": "/software/repository/gitlab/vincent-sater/umigen", + "uid": "gitlab/aroffringa/wsclean", + "url": "https://gitlab.com/aroffringa/wsclean", + "rel": "/software/repository/gitlab/aroffringa/wsclean", "avatar": "https://gitlab.comNone", - "description": "UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries", + "description": "WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution. Manual: https://wsclean.readthedocs.io/", "topics": [] }, { - "uid": "gitlab/InspectorCell/inspectorcell", - "url": "https://gitlab.com/InspectorCell/inspectorcell", - "rel": "/software/repository/gitlab/InspectorCell/inspectorcell", + "uid": "gitlab/aroffringa/aoflagger", + "url": "https://gitlab.com/aroffringa/aoflagger", + "rel": "/software/repository/gitlab/aroffringa/aoflagger", "avatar": "https://gitlab.comNone", - "description": "InspectorCell provides an efficient workflow and graphical interface to generate high-quality training datasets from\r\nhighly multiplexed microscopy images.", + "description": "The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes.", "topics": [] }, { - "uid": "gitlab/uit-sfb/metapipe", - "url": "https://gitlab.com/uit-sfb/metapipe", - "rel": "/software/repository/gitlab/uit-sfb/metapipe", + "uid": "gitlab/andreas.andrusch/paipline", + "url": "https://gitlab.com/andreas.andrusch/paipline", + "rel": "/software/repository/gitlab/andreas.andrusch/paipline", "avatar": "https://gitlab.comNone", - "description": "Metapipe based on Nextflow", - "topics": [] - }, - { - "uid": "gitlab/ezlab/busco", - "url": "https://gitlab.com/ezlab/busco", - "rel": "/software/repository/gitlab/ezlab/busco", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/1544766/Screen_Shot_2019-11-26_at_17.26.57.png", - "description": "Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)", + "description": "Pipeline for the Automatic Identification of Pathogens", "topics": [] }, { - "uid": "gitlab/etienne.behar/menura", - "url": "https://gitlab.com/etienne.behar/menura", - "rel": "/software/repository/gitlab/etienne.behar/menura", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/24686946/menura_logo2_thumb.png", - "description": "Menura is a space plasma simulation code. It is built around a hybrid Particle In Cell (PIC) solver, running on Graphics Processing Units. More informations on https://menura.readthedocs.io", + "uid": "gitlab/materials-modeling/calorine", + "url": "https://gitlab.com/materials-modeling/calorine", + "rel": "/software/repository/gitlab/materials-modeling/calorine", + "avatar": "https://gitlab.com/uploads/-/system/project/avatar/26123426/salamander.png", + "description": "[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)", "topics": [ - "plasma", - "simulation", - "solar wind", - "turbulence" + "atomic scale simulation", + "condensed matter physics", + "force constants", + "gpumd", + "hiphive", + "machine learning potentials", + "molecular dynamics", + "neural network potentials", + "phonons", + "physics", + "python", + "thermal conductivity", + "thermal transport" ] }, { - "uid": "gitlab/clairedavies/sedbys", - "url": "https://gitlab.com/clairedavies/sedbys", - "rel": "/software/repository/gitlab/clairedavies/sedbys", - "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19428398/sedbys_logo.jpg", - 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"uid": "github/Higgins00/TESS-Localize", - "url": "https://github.com/Higgins00/TESS-Localize", - "rel": "/software/repository/github/Higgins00/TESS-Localize", - "avatar": "https://avatars.githubusercontent.com/u/43622895?v=4", - "description": "Code for localizing variable star signatures in TESS Photometry", + "uid": "github/FSEC-Photovoltaics/pvrpm-lcoe", + "url": "https://github.com/FSEC-Photovoltaics/pvrpm-lcoe", + "rel": "/software/repository/github/FSEC-Photovoltaics/pvrpm-lcoe", + "avatar": "https://avatars.githubusercontent.com/u/72280691?v=4", + "description": "PV Simulation using SAM and Python", "topics": [] + }, + { + "uid": "github/Schuch666/eva3dm", + "url": "https://github.com/Schuch666/eva3dm", + "rel": "/software/repository/github/Schuch666/eva3dm", + "avatar": "https://avatars.githubusercontent.com/u/32721340?v=4", + "description": "A package to evaluate 3d weather and air quality models", + "topics": [ + "air-quality-model", + "atmos", + "atmosphere", + "atmospheric-chemistry", + "atmospheric-modelling", + "atmospheric-models", + "atmospheric-science", + "evaluation", + "model-evaluation", + "model-evaluation-metrics", + "wrf-chem", + "air-quality-model-evaluation" + ] } ] \ No newline at end of file diff --git a/docs/repository/github/AndrewIOM/bristlecone/annotate-criteria/index.html b/docs/repository/github/AndrewIOM/bristlecone/annotate-criteria/index.html new file mode 100644 index 000000000..605e31b4a --- /dev/null +++ b/docs/repository/github/AndrewIOM/bristlecone/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/AndrewIOM/bristlecone + + + + + + + + + + + +
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What do you think about github/AndrewIOM/bristlecone + +

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An F# library for mechanistic modelling of ecological time series data

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QuestionYour Response
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+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/AndrewIOM/bristlecone/annotate-taxonomy/index.html b/docs/repository/github/AndrewIOM/bristlecone/annotate-taxonomy/index.html new file mode 100644 index 000000000..359978869 --- /dev/null +++ b/docs/repository/github/AndrewIOM/bristlecone/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
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github/AndrewIOM/bristlecone

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How would you categorize this software? Choose more than one. See examples and visual

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
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What do you think about github/ComputationalBiomedicineGroup/Rectangle + +

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None

+

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QuestionYour Response
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github/ComputationalBiomedicineGroup/Rectangle

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Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
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What do you think about github/JianhanZhang/CFRL + +

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None

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QuestionYour Response
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Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
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+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/JianhanZhang/CFRL/annotate-taxonomy/index.html b/docs/repository/github/JianhanZhang/CFRL/annotate-taxonomy/index.html new file mode 100644 index 000000000..ed212ea50 --- /dev/null +++ b/docs/repository/github/JianhanZhang/CFRL/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
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github/JianhanZhang/CFRL

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Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
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What do you think about github/Macatools/macapype + +

+

PNH segmentation pipelines based on nipype

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QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
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Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
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github/Macatools/macapype

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/Nischalcs50/nsEVDx/annotate-criteria/index.html b/docs/repository/github/Nischalcs50/nsEVDx/annotate-criteria/index.html new file mode 100644 index 000000000..9be93f9c2 --- /dev/null +++ b/docs/repository/github/Nischalcs50/nsEVDx/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/Nischalcs50/nsEVDx + + + + + + + + + + + +
+
+
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+
+

What do you think about github/Nischalcs50/nsEVDx + +

+

Modeling Nonstationary Extreme Value Distributions

+

If you don't know an answer, don't answer it!

+
+
+ +
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QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
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+ +
+ database: filesystem +
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+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/Nischalcs50/nsEVDx/annotate-taxonomy/index.html b/docs/repository/github/Nischalcs50/nsEVDx/annotate-taxonomy/index.html new file mode 100644 index 000000000..b7d2b4ef2 --- /dev/null +++ b/docs/repository/github/Nischalcs50/nsEVDx/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/Nischalcs50/nsEVDx

+

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+

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+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/TingLi2016/DeepDILI/annotate-criteria/index.html b/docs/repository/github/TingLi2016/DeepDILI/annotate-criteria/index.html new file mode 100644 index 000000000..b9c063be4 --- /dev/null +++ b/docs/repository/github/TingLi2016/DeepDILI/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/TingLi2016/DeepDILI + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/TingLi2016/DeepDILI + +

+

None

+

If you don't know an answer, don't answer it!

+
+
+ +
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QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
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+
+
+
+
+ +
+ database: filesystem +
+
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+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/TingLi2016/DeepDILI/annotate-taxonomy/index.html b/docs/repository/github/TingLi2016/DeepDILI/annotate-taxonomy/index.html new file mode 100644 index 000000000..4c8f2af98 --- /dev/null +++ b/docs/repository/github/TingLi2016/DeepDILI/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/TingLi2016/DeepDILI

+

How would you categorize this software? Choose more than one. See examples and visual

+

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+
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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/amslala/regtools/annotate-criteria/index.html b/docs/repository/github/amslala/regtools/annotate-criteria/index.html new file mode 100644 index 000000000..3775cf5f0 --- /dev/null +++ b/docs/repository/github/amslala/regtools/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/amslala/regtools + + + + + + + + + + + +
+
+
+
+
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+
+
+
+
+
+

What do you think about github/amslala/regtools + +

+

R package to facilitate the manipulation, analysis and visualization of data from Norwegian health and population registers.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/amslala/regtools/annotate-taxonomy/index.html b/docs/repository/github/amslala/regtools/annotate-taxonomy/index.html new file mode 100644 index 000000000..1ee2abfbb --- /dev/null +++ b/docs/repository/github/amslala/regtools/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
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+
+

github/amslala/regtools

+

How would you categorize this software? Choose more than one. See examples and visual

+

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+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/brycewang-stanford/StatsPAI/annotate-criteria/index.html b/docs/repository/github/brycewang-stanford/StatsPAI/annotate-criteria/index.html new file mode 100644 index 000000000..5dfc05675 --- /dev/null +++ b/docs/repository/github/brycewang-stanford/StatsPAI/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/brycewang-stanford/StatsPAI + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/brycewang-stanford/StatsPAI + +

+

StatsPAI is the first Agent-native Python library for causal inference and applied econometrics — unified API, broad cross-method coverage, structured result objects, machine-readable schemas, Skills, an MCP server, and R/Stata parity validation.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
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+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/brycewang-stanford/StatsPAI/annotate-taxonomy/index.html b/docs/repository/github/brycewang-stanford/StatsPAI/annotate-taxonomy/index.html new file mode 100644 index 000000000..e6305544d --- /dev/null +++ b/docs/repository/github/brycewang-stanford/StatsPAI/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/brycewang-stanford/StatsPAI

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/ccneko/CLAIREscope/annotate-criteria/index.html b/docs/repository/github/ccneko/CLAIREscope/annotate-criteria/index.html new file mode 100644 index 000000000..728427d41 --- /dev/null +++ b/docs/repository/github/ccneko/CLAIREscope/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/ccneko/CLAIREscope + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/ccneko/CLAIREscope + +

+

Interactive Streamlit Single-Cell RNA-seq Multi-Dataset Expression, Composition, Scoring & Correlation Viewer

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/ccneko/CLAIREscope/annotate-taxonomy/index.html b/docs/repository/github/ccneko/CLAIREscope/annotate-taxonomy/index.html new file mode 100644 index 000000000..d4a76470e --- /dev/null +++ b/docs/repository/github/ccneko/CLAIREscope/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/ccneko/CLAIREscope

+

How would you categorize this software? Choose more than one. See examples and visual

+

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+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/faridrashidi/scphylo-tools/annotate-criteria/index.html b/docs/repository/github/faridrashidi/scphylo-tools/annotate-criteria/index.html new file mode 100644 index 000000000..23ff095ce --- /dev/null +++ b/docs/repository/github/faridrashidi/scphylo-tools/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/faridrashidi/scphylo-tools + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/faridrashidi/scphylo-tools + +

+

A python toolkit for single-cell tumor phylogenetic analysis

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/faridrashidi/scphylo-tools/annotate-taxonomy/index.html b/docs/repository/github/faridrashidi/scphylo-tools/annotate-taxonomy/index.html new file mode 100644 index 000000000..bf7b789a0 --- /dev/null +++ b/docs/repository/github/faridrashidi/scphylo-tools/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/faridrashidi/scphylo-tools

+

How would you categorize this software? Choose more than one. See examples and visual

+

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+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/galaxyproteomics/tools-galaxyp/annotate-criteria/index.html b/docs/repository/github/galaxyproteomics/tools-galaxyp/annotate-criteria/index.html new file mode 100644 index 000000000..304ce5c97 --- /dev/null +++ b/docs/repository/github/galaxyproteomics/tools-galaxyp/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/galaxyproteomics/tools-galaxyp + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/galaxyproteomics/tools-galaxyp + +

+

Galaxy Tool Shed repositories maintained and developed by the GalaxyP community

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/galaxyproteomics/tools-galaxyp/annotate-taxonomy/index.html b/docs/repository/github/galaxyproteomics/tools-galaxyp/annotate-taxonomy/index.html new file mode 100644 index 000000000..6db01ad48 --- /dev/null +++ b/docs/repository/github/galaxyproteomics/tools-galaxyp/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/galaxyproteomics/tools-galaxyp

+

How would you categorize this software? Choose more than one. See examples and visual

+

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+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/hansenjn/AdipoQ/annotate-criteria/index.html b/docs/repository/github/hansenjn/AdipoQ/annotate-criteria/index.html new file mode 100644 index 000000000..cce84e873 --- /dev/null +++ b/docs/repository/github/hansenjn/AdipoQ/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/hansenjn/AdipoQ + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/hansenjn/AdipoQ + +

+

A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/hansenjn/AdipoQ/annotate-taxonomy/index.html b/docs/repository/github/hansenjn/AdipoQ/annotate-taxonomy/index.html new file mode 100644 index 000000000..4cd3fd4f6 --- /dev/null +++ b/docs/repository/github/hansenjn/AdipoQ/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/hansenjn/AdipoQ

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/hanyuchenBio/KDepoCaps/annotate-criteria/index.html b/docs/repository/github/hanyuchenBio/KDepoCaps/annotate-criteria/index.html new file mode 100644 index 000000000..791fbc412 --- /dev/null +++ b/docs/repository/github/hanyuchenBio/KDepoCaps/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/hanyuchenBio/KDepoCaps + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/hanyuchenBio/KDepoCaps + +

+

A machine learning tool for predicting the capsular-type specificity of Klebsiella pneumoniae phage depolymerases from protein sequences.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/hanyuchenBio/KDepoCaps/annotate-taxonomy/index.html b/docs/repository/github/hanyuchenBio/KDepoCaps/annotate-taxonomy/index.html new file mode 100644 index 000000000..6001be198 --- /dev/null +++ b/docs/repository/github/hanyuchenBio/KDepoCaps/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/hanyuchenBio/KDepoCaps

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/helena-bioinformatics/folklore-mcp/annotate-criteria/index.html b/docs/repository/github/helena-bioinformatics/folklore-mcp/annotate-criteria/index.html new file mode 100644 index 000000000..6ae0b58e3 --- /dev/null +++ b/docs/repository/github/helena-bioinformatics/folklore-mcp/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/helena-bioinformatics/folklore-mcp + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/helena-bioinformatics/folklore-mcp + +

+

Folklore Clinical Variant Interpretation MCP — official public Helena Bioinformatics MCP for ACMG/AMP evidence and literature.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/helena-bioinformatics/folklore-mcp/annotate-taxonomy/index.html b/docs/repository/github/helena-bioinformatics/folklore-mcp/annotate-taxonomy/index.html new file mode 100644 index 000000000..767f1a368 --- /dev/null +++ b/docs/repository/github/helena-bioinformatics/folklore-mcp/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/helena-bioinformatics/folklore-mcp

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/mancusolab/jaxQTL/annotate-criteria/index.html b/docs/repository/github/mancusolab/jaxQTL/annotate-criteria/index.html new file mode 100644 index 000000000..96f9f0b2d --- /dev/null +++ b/docs/repository/github/mancusolab/jaxQTL/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/mancusolab/jaxQTL + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/mancusolab/jaxQTL + +

+

Flexible, scalable, sc molQTL analyses using generalized linear models implemented in JAX

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/mancusolab/jaxQTL/annotate-taxonomy/index.html b/docs/repository/github/mancusolab/jaxQTL/annotate-taxonomy/index.html new file mode 100644 index 000000000..8f6b4e841 --- /dev/null +++ b/docs/repository/github/mancusolab/jaxQTL/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/mancusolab/jaxQTL

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/openturns/openturns/annotate-criteria/index.html b/docs/repository/github/openturns/openturns/annotate-criteria/index.html new file mode 100644 index 000000000..8c6043d00 --- /dev/null +++ b/docs/repository/github/openturns/openturns/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/openturns/openturns + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/openturns/openturns + +

+

Probabilistic modelling and uncertainty quantification library

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/openturns/openturns/annotate-taxonomy/index.html b/docs/repository/github/openturns/openturns/annotate-taxonomy/index.html new file mode 100644 index 000000000..db0c3eb90 --- /dev/null +++ b/docs/repository/github/openturns/openturns/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/openturns/openturns

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/rxdock/rxdock/annotate-criteria/index.html b/docs/repository/github/rxdock/rxdock/annotate-criteria/index.html new file mode 100644 index 000000000..cf210d746 --- /dev/null +++ b/docs/repository/github/rxdock/rxdock/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/rxdock/rxdock + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/rxdock/rxdock + +

+

RxDock is a fork of rDock. Note: the latest code is under development. Please do git checkout patched-rdock after clone if you want patched rDock. [IMPORTANT NOTE: pull requests should be posted on GitLab, this is a read-only source code mirror]

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/rxdock/rxdock/annotate-taxonomy/index.html b/docs/repository/github/rxdock/rxdock/annotate-taxonomy/index.html new file mode 100644 index 000000000..7f823cce7 --- /dev/null +++ b/docs/repository/github/rxdock/rxdock/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/rxdock/rxdock

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/sanger-tol/agp-tpf-utils/annotate-criteria/index.html b/docs/repository/github/sanger-tol/agp-tpf-utils/annotate-criteria/index.html new file mode 100644 index 000000000..23605b0e8 --- /dev/null +++ b/docs/repository/github/sanger-tol/agp-tpf-utils/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/sanger-tol/agp-tpf-utils + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/sanger-tol/agp-tpf-utils + +

+

Code for manipulating AGP and TPF assembly files

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/sanger-tol/agp-tpf-utils/annotate-taxonomy/index.html b/docs/repository/github/sanger-tol/agp-tpf-utils/annotate-taxonomy/index.html new file mode 100644 index 000000000..6c9e3d209 --- /dev/null +++ b/docs/repository/github/sanger-tol/agp-tpf-utils/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/sanger-tol/agp-tpf-utils

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/soedinglab/PMGen/annotate-criteria/index.html b/docs/repository/github/soedinglab/PMGen/annotate-criteria/index.html new file mode 100644 index 000000000..6c6ac391f --- /dev/null +++ b/docs/repository/github/soedinglab/PMGen/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/soedinglab/PMGen + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/soedinglab/PMGen + +

+

peptide-MHC modeling, binding prediction, and protein design.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/soedinglab/PMGen/annotate-taxonomy/index.html b/docs/repository/github/soedinglab/PMGen/annotate-taxonomy/index.html new file mode 100644 index 000000000..f3b4c7563 --- /dev/null +++ b/docs/repository/github/soedinglab/PMGen/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/soedinglab/PMGen

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/stevenhirsch/force-plate-jump-analyses/annotate-criteria/index.html b/docs/repository/github/stevenhirsch/force-plate-jump-analyses/annotate-criteria/index.html new file mode 100644 index 000000000..97e1d20ee --- /dev/null +++ b/docs/repository/github/stevenhirsch/force-plate-jump-analyses/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/stevenhirsch/force-plate-jump-analyses + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/stevenhirsch/force-plate-jump-analyses + +

+

A free, open-source python package for computing vertical jump metrics from force plate data.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/stevenhirsch/force-plate-jump-analyses/annotate-taxonomy/index.html b/docs/repository/github/stevenhirsch/force-plate-jump-analyses/annotate-taxonomy/index.html new file mode 100644 index 000000000..e9f0dd939 --- /dev/null +++ b/docs/repository/github/stevenhirsch/force-plate-jump-analyses/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/stevenhirsch/force-plate-jump-analyses

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/tdlabs-ai/tanml/annotate-criteria/index.html b/docs/repository/github/tdlabs-ai/tanml/annotate-criteria/index.html new file mode 100644 index 000000000..c259ef4f7 --- /dev/null +++ b/docs/repository/github/tdlabs-ai/tanml/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/tdlabs-ai/tanml + + + + + + + + + + + +
+
+
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+
+
+
+
+

What do you think about github/tdlabs-ai/tanml + +

+

Automated validation toolkit for tabular ML models in finance and regulated domains.

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/tdlabs-ai/tanml/annotate-taxonomy/index.html b/docs/repository/github/tdlabs-ai/tanml/annotate-taxonomy/index.html new file mode 100644 index 000000000..0c71a92e3 --- /dev/null +++ b/docs/repository/github/tdlabs-ai/tanml/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/tdlabs-ai/tanml

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/wenzelee/DeepNCI/annotate-criteria/index.html b/docs/repository/github/wenzelee/DeepNCI/annotate-criteria/index.html new file mode 100644 index 000000000..937d029ee --- /dev/null +++ b/docs/repository/github/wenzelee/DeepNCI/annotate-criteria/index.html @@ -0,0 +1,169 @@ + + + + + Annotate Criteria for github/wenzelee/DeepNCI + + + + + + + + + + + +
+
+
+
+
+
+
+
+
+
+
+

What do you think about github/wenzelee/DeepNCI + +

+

A 3D-CNN network for NCI

+

If you don't know an answer, don't answer it!

+
+
+ +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
QuestionYour Response
Would taking away the software be a detriment to research? + + + + +
Has the software been cited? + + + + +
Is the software intended for a particular domain? + + + + +
Was the software created with intention to solve a research question? + + + + +
Is the software intended for research? + + + + +
Has the software been used by researchers? + + + + +
+ +
+ +
+
+ + + +
+
+
+
+
+ +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/repository/github/wenzelee/DeepNCI/annotate-taxonomy/index.html b/docs/repository/github/wenzelee/DeepNCI/annotate-taxonomy/index.html new file mode 100644 index 000000000..6414b56a0 --- /dev/null +++ b/docs/repository/github/wenzelee/DeepNCI/annotate-taxonomy/index.html @@ -0,0 +1,254 @@ + + + + + Annotate Criteria + + + + + + + + + + + +
+
+
+
+

github/wenzelee/DeepNCI

+

How would you categorize this software? Choose more than one. See examples and visual

+

Your submission will be posted as a new GitHub issue, with automation to update the database.

+
+
+
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research Domain-specific software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to directly conduct research General software +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Explicitly for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Incidentally used for research +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
Software to support research Used for research but not explicitly for it +
+
+ +
+
+ + +
+
+ + +
+ database: filesystem +
+
+
+ + + + + + + + + + + + + \ No newline at end of file diff --git a/docs/search/index.html b/docs/search/index.html index 58c9e3644..592a0c2dc 100644 --- a/docs/search/index.html +++ b/docs/search/index.html @@ -63,78 +63,17 @@