From 225fcb75f01c5f655c59476e39f19a19b92b4ff3 Mon Sep 17 00:00:00 2001 From: LouisK92 Date: Thu, 11 Dec 2025 14:59:46 +0100 Subject: [PATCH] Account for categorical var names when making unique --- src/data_processors/process_dataset/script.py | 1 + 1 file changed, 1 insertion(+) diff --git a/src/data_processors/process_dataset/script.py b/src/data_processors/process_dataset/script.py index de91da88..dde37f4a 100644 --- a/src/data_processors/process_dataset/script.py +++ b/src/data_processors/process_dataset/script.py @@ -181,6 +181,7 @@ def subsample_adata_group_balanced(adata, group_key, n_samples, seed=0): adata = adata[subsample_adata_group_balanced(adata, "cell_type", N_MAX_SC, seed=0)] # Make the single-cell data gene names unique +adata.var_names = adata.var_names.astype(str) adata.var_names_make_unique() # Subset single-cell and spatial data to shared genes