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Merge pull request #32 from openpathsampling/release-0.1.1
Release 0.1.1
2 parents 89bbab4 + 55a1837 commit 5ff2ae7

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‎.github/workflows/autorelease-default-env.sh‎

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INSTALL_AUTORELEASE="python -m pip install autorelease==0.2.3"
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if [ -f autorelease-env.sh ]; then
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source autorelease-env.sh
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fi
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‎.github/workflows/autorelease-deploy.yml‎

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name: Autorelease
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on:
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release:
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types: [published]
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jobs:
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deploy_pypi:
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runs-on: ubuntu-latest
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name: "Deploy to PyPI"
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steps:
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- uses: actions/checkout@v2
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- uses: actions/setup-python@v2
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with:
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python-version: "3.x"
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- run: | # TODO: move this to an action
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source ./.github/workflows/autorelease-default-env.sh
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cat autorelease-env.sh >> $GITHUB_ENV
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eval $INSTALL_AUTORELEASE
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name: "Install autorelease"
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- run: |
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python -m pip install twine wheel
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name: "Install release tools"
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- run: |
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python setup.py sdist bdist_wheel
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twine check dist/*
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name: "Build and check package"
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- uses: pypa/gh-action-pypi-publish@master
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with:
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password: ${{ secrets.pypi_password }}
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name: "Deploy to testpypi"
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‎.github/workflows/autorelease-gh-rel.yml‎

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name: Autorelease
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on:
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push:
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branches:
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- stable
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jobs:
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release-gh:
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runs-on: ubuntu-latest
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name: "Cut release"
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steps:
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- uses: actions/checkout@v2
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- uses: actions/setup-python@v2
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with:
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python-version: "3.7"
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- run: | # TODO: move this to an action
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source ./.github/workflows/autorelease-default-env.sh
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cat autorelease-env.sh >> $GITHUB_ENV
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eval $INSTALL_AUTORELEASE
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name: "Install autorelease"
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- run: |
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VERSION=`python setup.py --version`
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PROJECT=`python setup.py --name`
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echo $PROJECT $VERSION
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autorelease-release --project $PROJECT --version $VERSION --token $AUTORELEASE_TOKEN
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env:
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AUTORELEASE_TOKEN: ${{ secrets.AUTORELEASE_TOKEN }}

‎.github/workflows/autorelease-prep.yml‎

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name: "Autorelease"
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on:
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pull_request:
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branches:
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- stable
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defaults:
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run:
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shell: bash
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jobs:
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deploy_testpypi:
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runs-on: ubuntu-latest
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name: "Deployment test"
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steps:
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- uses: actions/checkout@v2
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- uses: actions/setup-python@v2
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with:
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python-version: "3.x"
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- run: | # TODO: move this to an action
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source ./.github/workflows/autorelease-default-env.sh
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cat autorelease-env.sh >> $GITHUB_ENV
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eval $INSTALL_AUTORELEASE
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name: "Install autorelease"
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- run: |
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python -m pip install twine wheel
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name: "Install release tools"
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- run: |
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bump-dev-version
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python setup.py --version
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name: "Bump testpypi dev version"
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- run: |
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python setup.py sdist bdist_wheel
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twine check dist/*
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name: "Build and check package"
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- uses: pypa/gh-action-pypi-publish@master
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with:
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password: ${{ secrets.testpypi_password }}
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repository_url: https://test.pypi.org/legacy/
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name: "Deploy to testpypi"
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test_testpypi:
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runs-on: ubuntu-latest
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name: "Test deployed"
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needs: deploy_testpypi
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steps:
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- uses: actions/checkout@v2
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- uses: actions/setup-python@v2
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with:
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python-version: "3.x"
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- run: | # TODO: move this to an action
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source ./.github/workflows/autorelease-default-env.sh
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cat autorelease-env.sh >> $GITHUB_ENV
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eval $INSTALL_AUTORELEASE
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name: "Install autorelease"
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- run: test-testpypi
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‎.github/workflows/test-suite.yml‎

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name: "Tests"
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on:
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pull_request:
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branches:
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- master
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- stable
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push:
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branches:
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- master
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tags:
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- "v*"
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schedule:
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- cron: "25 5 * * *"
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defaults:
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run:
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shell: bash -l {0}
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jobs:
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test_suite:
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runs-on: ubuntu-latest
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name: "Unit tests"
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strategy:
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matrix:
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CONDA_PY:
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- 3.9
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- 3.8
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- 3.7
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- 3.6
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steps:
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- uses: actions/checkout@v2
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- uses: actions/setup-python@v2
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- uses: conda-incubator/setup-miniconda@v2
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with:
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auto-update-conda: true
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python-version: ${{ matrix.CONDA_PY }}
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- name: "Install testing tools"
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run: python -m pip install -r ./devtools/tests_require.txt
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- name: "Install"
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run: |
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conda install pip
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python -m pip install -e .
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- name: "Versions"
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run: conda list
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- name: "Autorelease check"
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env:
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PR_BRANCH: ${{ github.event.pull_request.base.ref }}
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REF: ${{ github.ref }}
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EVENT: ${{ github.event_name }}
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run: |
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if [ "$EVENT" != "pull_request" ]; then
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BRANCH=$REF
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else
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BRANCH=$PR_BRANCH
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fi
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python autorelease_check.py --branch $BRANCH --even ${EVENT}
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- name: "Unit tests"
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run: |
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python -c "import paths_cli"
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py.test -vv --cov --cov-report xml:cov.xml
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- name: "Report coverage"
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run: bash <(curl -s https://codecov.io/bash)

‎.travis.yml‎

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‎autorelease-env.sh‎

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INSTALL_AUTORELEASE="python -m pip install autorelease==0.2.3 nose"
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PACKAGE_IMPORT_NAME=paths_cli

‎docs/api/index.rst‎

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.. _api:
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API
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===
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.. currentmodule:: paths_cli
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CLI and Plugins
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---------------
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.. autosummary::
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:toctree: generated
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OpenPathSamplingCLI
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plugin_management.CLIPluginLoader
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plugin_management.FilePluginLoader
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plugin_management.NamespacePluginLoader
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Parameter Decorators
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--------------------
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These are the functions used to create the reusable parameter decorators.
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Note that you will probably never need to use these; instead, use the
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existing parameter decorators.
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.. autosummary::
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:toctree: generated
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param_core.Option
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param_core.Argument
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param_core.AbstractLoader
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param_core.StorageLoader
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param_core.OPSStorageLoadNames
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param_core.OPSStorageLoadSingle
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Search strategies
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-----------------
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These are the various strategies for finding objects in a storage, in
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particular if we have to guess because the user didn't provide an explicit
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choice or didn't tag.
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.. autosummary::
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:toctree: generated
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param_core.Getter
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param_core.GetByName
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param_core.GetByNumber
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param_core.GetPredefinedName
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param_core.GetOnly
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param_core.GetOnlyNamed
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param_core.GetOnlySnapshot
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Commands
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--------
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.. autosummary::
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:toctree: generated
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:recursive:
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commands.visit_all
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commands.equilibrate
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commands.pathsampling
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commands.append
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commands.contents

‎docs/conf.py‎

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# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
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# ones.
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extensions = [
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'sphinx.ext.autodoc',
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'sphinx.ext.autosummary',
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'sphinx_click.ext',
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]
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autosummary_generate = True
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# Add any paths that contain templates here, relative to this directory.
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templates_path = ['_templates']
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‎docs/for_core/README.md‎

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