@@ -33,25 +33,26 @@ MAINTAINER Stanford Center for Reproducible Neuroscience <crn.poldracklab@gmail.
3333RUN ln -snf /bin/bash /bin/sh
3434WORKDIR /root
3535
36- RUN mkdir -p ~/examples/ && ln -sf /usr/share/fsl-feeds/ ~/examples/feeds
37- RUN curl -sSL "https://dl.dropbox.com/s/jzgq2nupxyz36bp/nipype-tutorial.tar.bz2" -o nipype-tutorial.tar.bz2 && \
38- tar jxf nipype-tutorial.tar.bz2 -C /root/examples && \
39- curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt1.tar.gz" -o fdt1.tar.gz && \
40- curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt2.tar.gz" -o fdt2.tar.gz && \
41- curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/tbss.tar.gz" -o tbss.tar.gz && \
42- mkdir ~/examples/fsl_course_data && \
43- echo 'Untarring fsl course data...' && \
44- tar zxf fdt1.tar.gz -C ~/examples/fsl_course_data && \
45- tar zxf fdt2.tar.gz -C ~/examples/fsl_course_data && \
46- tar zxf tbss.tar.gz -C ~/examples/fsl_course_data && \
47- echo 'export FSL_COURSE_DATA=/root/examples/fsl_course_data' >> /etc/profile.d/nipype_data.sh
48-
36+ # Install fsl-feeds and the nipype-tutorial data
4937ARG DEBIAN_FRONTEND=noninteractive
5038RUN apt-get update && \
5139 apt-get install -y fsl-feeds && \
52- rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
40+ rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* && \
41+ mkdir -p ~/examples/ && \
42+ ln -sf /usr/share/fsl-feeds/ ~/examples/feeds && \
43+ curl -sSL "https://dl.dropbox.com/s/jzgq2nupxyz36bp/nipype-tutorial.tar.bz2" -o nipype-tutorial.tar.bz2 && \
44+ tar jxf nipype-tutorial.tar.bz2 -C /root/examples
5345
46+ # RUN curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt1.tar.gz" -o fdt1.tar.gz && \
47+ # curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/fdt2.tar.gz" -o fdt2.tar.gz && \
48+ # curl -sSL "http://fsl.fmrib.ox.ac.uk/fslcourse/tbss.tar.gz" -o tbss.tar.gz && \
49+ # mkdir ~/examples/fsl_course_data && \
50+ # echo 'Untarring fsl course data...' && \
51+ # tar zxf fdt1.tar.gz -C ~/examples/fsl_course_data && \
52+ # tar zxf fdt2.tar.gz -C ~/examples/fsl_course_data && \
53+ # tar zxf tbss.tar.gz -C ~/examples/fsl_course_data && \
54+ # echo 'export FSL_COURSE_DATA=/root/examples/fsl_course_data' >> /etc/profile.d/nipype_data.sh
55+ # ENV FSL_COURSE_DATA /root/examples/fsl_course_data
56+ # RUN echo 'source /etc/profile.d/nipype_data.sh' >> /etc/bash.bashrc
5457
55- ENV FSL_COURSE_DATA /root/examples/fsl_course_data
56- RUN echo 'source /etc/profile.d/nipype_data.sh' >> /etc/bash.bashrc
5758CMD ["/bin/bash" ]
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