removing usedefault=False from traits (for traits were default was set i also remove this value)

djarecka · djarecka · commit f2d39a274536 · 2018-04-18T00:29:33.000-04:00
diff --git a/nipype/interfaces/ants/registration.py b/nipype/interfaces/ants/registration.py
@@ -17,7 +17,6 @@ class ANTSInputSpec(ANTSCommandInputSpec):
         3,
         2,
         argstr='%d',
-        usedefault=False,
         position=1,
         desc='image dimension (2 or 3)')
     fixed_image = InputMultiPath(
diff --git a/nipype/interfaces/ants/segmentation.py b/nipype/interfaces/ants/segmentation.py
@@ -1063,7 +1063,6 @@ class DenoiseImageInputSpec(ANTSCommandInputSpec):
         3,
         4,
         argstr='-d %d',
-        usedefault=False,
         desc='This option forces the image to be treated '
         'as a specified-dimensional image. If not '
         'specified, the program tries to infer the '
@@ -1163,7 +1162,6 @@ class AntsJointFusionInputSpec(ANTSCommandInputSpec):
         2,
         4,
         argstr='-d %d',
-        usedefault=False,
         desc='This option forces the image to be treated '
         'as a specified-dimensional image. If not '
         'specified, the program tries to infer the '
@@ -1231,7 +1229,6 @@ class AntsJointFusionInputSpec(ANTSCommandInputSpec):
         'PC',
         'MSQ',
         argstr='-m %s',
-        usedefault=False,
         desc=('Metric to be used in determining the most similar '
               'neighborhood patch. Options include Pearson\'s '
               'correlation (PC) and mean squares (MSQ). Default = '
diff --git a/nipype/interfaces/ants/tests/test_auto_ANTS.py b/nipype/interfaces/ants/tests/test_auto_ANTS.py
@@ -11,7 +11,6 @@ def test_ANTS_inputs():
         dimension=dict(
             argstr='%d',
             position=1,
-            usedefault=False,
         ),
         environ=dict(
             nohash=True,
diff --git a/nipype/interfaces/ants/tests/test_auto_AntsJointFusion.py b/nipype/interfaces/ants/tests/test_auto_AntsJointFusion.py
@@ -26,10 +26,7 @@ def test_AntsJointFusion_inputs():
             argstr='-c',
             usedefault=True,
         ),
-        dimension=dict(
-            argstr='-d %d',
-            usedefault=False,
-        ),
+        dimension=dict(argstr='-d %d', ),
         environ=dict(
             nohash=True,
             usedefault=True,
@@ -62,10 +59,7 @@ def test_AntsJointFusion_inputs():
         out_label_post_prob_name_format=dict(
             requires=['out_label_fusion', 'out_intensity_fusion_name_format'],
         ),
-        patch_metric=dict(
-            argstr='-m %s',
-            usedefault=False,
-        ),
+        patch_metric=dict(argstr='-m %s', ),
         patch_radius=dict(
             argstr='-p %s',
             maxlen=3,
diff --git a/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py b/nipype/interfaces/ants/tests/test_auto_AverageAffineTransform.py
@@ -10,7 +10,6 @@ def test_AverageAffineTransform_inputs():
             argstr='%d',
             mandatory=True,
             position=0,
-            usedefault=False,
         ),
         environ=dict(
             nohash=True,
diff --git a/nipype/interfaces/ants/tests/test_auto_CreateJacobianDeterminantImage.py b/nipype/interfaces/ants/tests/test_auto_CreateJacobianDeterminantImage.py
@@ -28,7 +28,6 @@ def test_CreateJacobianDeterminantImage_inputs():
             argstr='%d',
             mandatory=True,
             position=0,
-            usedefault=False,
         ),
         num_threads=dict(
             nohash=True,
diff --git a/nipype/interfaces/ants/tests/test_auto_DenoiseImage.py b/nipype/interfaces/ants/tests/test_auto_DenoiseImage.py
@@ -6,10 +6,7 @@
 def test_DenoiseImage_inputs():
     input_map = dict(
         args=dict(argstr='%s', ),
-        dimension=dict(
-            argstr='-d %d',
-            usedefault=False,
-        ),
+        dimension=dict(argstr='-d %d', ),
         environ=dict(
             nohash=True,
             usedefault=True,
diff --git a/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py b/nipype/interfaces/ants/tests/test_auto_MultiplyImages.py
@@ -10,7 +10,6 @@ def test_MultiplyImages_inputs():
             argstr='%d',
             mandatory=True,
             position=0,
-            usedefault=False,
         ),
         environ=dict(
             nohash=True,
diff --git a/nipype/interfaces/ants/utils.py b/nipype/interfaces/ants/utils.py
@@ -15,7 +15,6 @@ class AverageAffineTransformInputSpec(ANTSCommandInputSpec):
         3,
         2,
         argstr='%d',
-        usedefault=False,
         mandatory=True,
         position=0,
         desc='image dimension (2 or 3)')
@@ -129,7 +128,6 @@ class MultiplyImagesInputSpec(ANTSCommandInputSpec):
         3,
         2,
         argstr='%d',
-        usedefault=False,
         mandatory=True,
         position=0,
         desc='image dimension (2 or 3)')
@@ -185,7 +183,6 @@ class CreateJacobianDeterminantImageInputSpec(ANTSCommandInputSpec):
         3,
         2,
         argstr='%d',
-        usedefault=False,
         mandatory=True,
         position=0,
         desc='image dimension (2 or 3)')
diff --git a/nipype/interfaces/freesurfer/preprocess.py b/nipype/interfaces/freesurfer/preprocess.py
@@ -2292,9 +2292,7 @@ class NormalizeInputSpec(FSTraitedSpec):
         desc="The output file for Normalize")
     # optional
     gradient = traits.Int(
-        1,
         argstr="-g %d",
-        usedefault=False,
         desc="use max intensity/mm gradient g (default=1)")
     mask = File(
         argstr="-mask %s",
diff --git a/nipype/interfaces/freesurfer/tests/test_auto_Normalize.py b/nipype/interfaces/freesurfer/tests/test_auto_Normalize.py
@@ -10,10 +10,7 @@ def test_Normalize_inputs():
             nohash=True,
             usedefault=True,
         ),
-        gradient=dict(
-            argstr='-g %d',
-            usedefault=False,
-        ),
+        gradient=dict(argstr='-g %d', ),
         ignore_exception=dict(
             deprecated='1.0.0',
             nohash=True,
diff --git a/nipype/interfaces/fsl/dti.py b/nipype/interfaces/fsl/dti.py
@@ -851,7 +851,6 @@ class ProbTrackX2InputSpec(ProbTrackXBaseInputSpec):
     simple = traits.Bool(
         desc=('rack from a list of voxels (seed must be a '
               'ASCII list of coordinates)'),
-        usedefault=False,
         argstr='--simple')
     fopd = File(
         exists=True,
diff --git a/nipype/interfaces/fsl/maths.py b/nipype/interfaces/fsl/maths.py
@@ -221,7 +221,6 @@ class PercentileImageInput(MathsInput):
     perc = traits.Range(
         low=0,
         high=100,
-        usedefault=False,
         argstr="%f",
         position=5,
         desc=("nth percentile (0-100) of FULL RANGE "
diff --git a/nipype/interfaces/fsl/tests/test_auto_PercentileImage.py b/nipype/interfaces/fsl/tests/test_auto_PercentileImage.py
@@ -47,7 +47,6 @@ def test_PercentileImage_inputs():
         perc=dict(
             argstr='%f',
             position=5,
-            usedefault=False,
         ),
         terminal_output=dict(
             deprecated='1.0.0',
diff --git a/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py b/nipype/interfaces/fsl/tests/test_auto_ProbTrackX2.py
@@ -79,10 +79,7 @@ def test_ProbTrackX2_inputs():
             mandatory=True,
         ),
         seed_ref=dict(argstr='--seedref=%s', ),
-        simple=dict(
-            argstr='--simple',
-            usedefault=False,
-        ),
+        simple=dict(argstr='--simple', ),
         step_length=dict(argstr='--steplength=%.3f', ),
         stop_mask=dict(argstr='--stop=%s', ),
         target2=dict(argstr='--target2=%s', ),
diff --git a/nipype/interfaces/minc/minc.py b/nipype/interfaces/minc/minc.py
@@ -394,8 +394,6 @@ class ConvertInputSpec(CommandLineInputSpec):
         low=0,
         desc=
         'Set the target block size for chunking (0 default, >1 block size).',
-        value=0,
-        usedefault=False,
         argstr='-chunk %d',
     )
 
@@ -621,8 +619,6 @@ class DumpInputSpec(StdOutCommandLineInputSpec):
     line_length = traits.Range(
         low=0,
         desc='Line length maximum in data section (default 80).',
-        value=80,
-        usedefault=False,
         argstr='-l %d')
 
     netcdf_name = traits.Str(
@@ -1049,8 +1045,6 @@ class CalcInputSpec(CommandLineInputSpec):
     max_buffer_size_in_kb = traits.Range(
         low=0,
         desc='Specify the maximum size of the internal buffers (in kbytes).',
-        value=0,
-        usedefault=False,
         argstr='-max_buffer_size_in_kb %d')
 
     _xor_check_dimensions = (
@@ -1123,10 +1117,8 @@ class CalcInputSpec(CommandLineInputSpec):
              )))
 
     eval_width = traits.Int(
-        200,
         desc='Number of voxels to evaluate simultaneously.',
-        argstr='-eval_width %s',
-        usedefault=False)
+        argstr='-eval_width %s')
 
 
 class CalcOutputSpec(TraitedSpec):
diff --git a/nipype/interfaces/minc/tests/test_auto_Calc.py b/nipype/interfaces/minc/tests/test_auto_Calc.py
@@ -23,10 +23,7 @@ def test_Calc_inputs():
             nohash=True,
             usedefault=True,
         ),
-        eval_width=dict(
-            argstr='-eval_width %s',
-            usedefault=False,
-        ),
+        eval_width=dict(argstr='-eval_width %s', ),
         expfile=dict(
             argstr='-expfile %s',
             mandatory=True,
@@ -108,10 +105,7 @@ def test_Calc_inputs():
             position=-2,
             sep=' ',
         ),
-        max_buffer_size_in_kb=dict(
-            argstr='-max_buffer_size_in_kb %d',
-            usedefault=False,
-        ),
+        max_buffer_size_in_kb=dict(argstr='-max_buffer_size_in_kb %d', ),
         no_check_dimensions=dict(
             argstr='-nocheck_dimensions',
             xor=('check_dimensions', 'no_check_dimensions'),
diff --git a/nipype/interfaces/minc/tests/test_auto_Convert.py b/nipype/interfaces/minc/tests/test_auto_Convert.py
@@ -6,10 +6,7 @@
 def test_Convert_inputs():
     input_map = dict(
         args=dict(argstr='%s', ),
-        chunk=dict(
-            argstr='-chunk %d',
-            usedefault=False,
-        ),
+        chunk=dict(argstr='-chunk %d', ),
         clobber=dict(
             argstr='-clobber',
             usedefault=True,
diff --git a/nipype/interfaces/minc/tests/test_auto_Dump.py b/nipype/interfaces/minc/tests/test_auto_Dump.py
@@ -36,10 +36,7 @@ def test_Dump_inputs():
             mandatory=True,
             position=-2,
         ),
-        line_length=dict(
-            argstr='-l %d',
-            usedefault=False,
-        ),
+        line_length=dict(argstr='-l %d', ),
         netcdf_name=dict(argstr='-n %s', ),
         out_file=dict(
             argstr='> %s',
