RF: updated autotests

Author: mgxd

nipype/interfaces/afni/tests/test_auto_QwarpPlusMinus.py

@@ -5,25 +5,154 @@
 
 def test_QwarpPlusMinus_inputs():
     input_map = dict(
+        Qfinal=dict(argstr='-Qfinal', ),
+        Qonly=dict(argstr='-Qonly', ),
+        allineate=dict(argstr='-allineate', ),
+        allineate_opts=dict(
+            argstr='-allineate_opts %s',
+            requires=['allineate'],
+        ),
+        allsave=dict(
+            argstr='-allsave',
+            xor=['nopadWARP', 'duplo', 'plusminus'],
+        ),
         args=dict(argstr='%s', ),
+        ballopt=dict(
+            argstr='-ballopt',
+            xor=['workhard', 'boxopt'],
+        ),
         base_file=dict(
             argstr='-base %s',
             copyfile=False,
             mandatory=True,
         ),
+        baxopt=dict(
+            argstr='-boxopt',
+            xor=['workhard', 'ballopt'],
+        ),
         blur=dict(argstr='-blur %s', ),
+        duplo=dict(
+            argstr='-duplo',
+            xor=[
+                'gridlist', 'maxlev', 'inilev', 'iniwarp', 'plusminus',
+                'allsave'
+            ],
+        ),
+        emask=dict(
+            argstr='-emask %s',
+            copyfile=False,
+        ),
         environ=dict(
             nohash=True,
             usedefault=True,
         ),
+        expad=dict(
+            argstr='-expad %d',
+            xor=['nopadWARP'],
+        ),
+        gridlist=dict(
+            argstr='-gridlist %s',
+            copyfile=False,
+            xor=['duplo', 'plusminus'],
+        ),
+        hel=dict(
+            argstr='-hel',
+            xor=['nmi', 'mi', 'lpc', 'lpa', 'pear'],
+        ),
+        in_file=dict(
+            argstr='-source %s',
+            copyfile=False,
+            mandatory=True,
+        ),
+        inilev=dict(
+            argstr='-inilev %d',
+            xor=['duplo'],
+        ),
+        iniwarp=dict(
+            argstr='-iniwarp %s',
+            xor=['duplo'],
+        ),
+        iwarp=dict(
+            argstr='-iwarp',
+            xor=['plusminus'],
+        ),
+        lpa=dict(
+            argstr='-lpa',
+            xor=['nmi', 'mi', 'lpc', 'hel', 'pear'],
+        ),
+        lpc=dict(
+            argstr='-lpc',
+            position=-2,
+            xor=['nmi', 'mi', 'hel', 'lpa', 'pear'],
+        ),
+        maxlev=dict(
+            argstr='-maxlev %d',
+            position=-1,
+            xor=['duplo'],
+        ),
+        mi=dict(
+            argstr='-mi',
+            xor=['mi', 'hel', 'lpc', 'lpa', 'pear'],
+        ),
         minpatch=dict(argstr='-minpatch %d', ),
-        nopadWARP=dict(argstr='-nopadWARP', ),
+        nmi=dict(
+            argstr='-nmi',
+            xor=['nmi', 'hel', 'lpc', 'lpa', 'pear'],
+        ),
+        noXdis=dict(argstr='-noXdis', ),
+        noYdis=dict(argstr='-noYdis', ),
+        noZdis=dict(argstr='-noZdis', ),
+        noneg=dict(argstr='-noneg', ),
+        nopad=dict(argstr='-nopad', ),
+        nopadWARP=dict(
+            argstr='-nopadWARP',
+            xor=['allsave', 'expad'],
+        ),
+        nopenalty=dict(argstr='-nopenalty', ),
+        nowarp=dict(argstr='-nowarp', ),
         noweight=dict(argstr='-noweight', ),
+        num_threads=dict(
+            nohash=True,
+            usedefault=True,
+        ),
+        out_file=dict(
+            argstr='-prefix %s',
+            position=0,
+            usedefault=True,
+        ),
+        out_weight_file=dict(argstr='-wtprefix %s', ),
+        outputtype=dict(),
+        overwrite=dict(argstr='-overwrite', ),
         pblur=dict(argstr='-pblur %s', ),
+        pear=dict(argstr='-pear', ),
+        penfac=dict(argstr='-penfac %f', ),
+        plusminus=dict(
+            argstr='-plusminus',
+            position=1,
+            usedefault=True,
+            xor=['duplo', 'allsave', 'iwarp'],
+        ),
+        quiet=dict(
+            argstr='-quiet',
+            xor=['verb'],
+        ),
+        resample=dict(argstr='-resample', ),
         source_file=dict(
             argstr='-source %s',
             copyfile=False,
-            mandatory=True,
+            deprecated='1.1.2',
+            new_name='in_file',
+        ),
+        verb=dict(
+            argstr='-verb',
+            xor=['quiet'],
+        ),
+        wball=dict(argstr='-wball %s', ),
+        weight=dict(argstr='-weight %s', ),
+        wmask=dict(argstr='-wpass %s %f', ),
+        workhard=dict(
+            argstr='-workhard',
+            xor=['boxopt', 'ballopt'],
         ),
     )
     inputs = QwarpPlusMinus.input_spec()
@@ -37,6 +166,7 @@ def test_QwarpPlusMinus_outputs():
         source_warp=dict(),
         warped_base=dict(),
         warped_source=dict(),
+        weights=dict(),
     )
     outputs = QwarpPlusMinus.output_spec()
 

nipype/interfaces/elastix/tests/test_auto_AnalyzeWarp.py

@@ -10,6 +10,15 @@ def test_AnalyzeWarp_inputs():
             nohash=True,
             usedefault=True,
         ),
+        jac=dict(
+            argstr='-jac %s',
+            usedefault=True,
+        ),
+        jacmat=dict(
+            argstr='-jacmat %s',
+            usedefault=True,
+        ),
+        moving_image=dict(argstr='-in %s', ),
         num_threads=dict(
             argstr='-threads %01d',
             nohash=True,
@@ -20,6 +29,11 @@ def test_AnalyzeWarp_inputs():
             mandatory=True,
             usedefault=True,
         ),
+        points=dict(
+            argstr='-def %s',
+            position=0,
+            usedefault=True,
+        ),
         transform_file=dict(
             argstr='-tp %s',
             mandatory=True,