@@ -218,39 +218,39 @@ def init_fmriprep_wf(
218218 reportlets_dir = os .path .join (work_dir , 'reportlets' )
219219 for subject_id in subject_list :
220220 single_subject_wf = init_single_subject_wf (
221- layout = layout ,
222- subject_id = subject_id ,
223- task_id = task_id ,
224- echo_idx = echo_idx ,
225- name = "single_subject_" + subject_id + "_wf" ,
226- reportlets_dir = reportlets_dir ,
227- output_dir = output_dir ,
228- ignore = ignore ,
229- debug = debug ,
230- low_mem = low_mem ,
231221 anat_only = anat_only ,
232- longitudinal = longitudinal ,
233- t2s_coreg = t2s_coreg ,
234- omp_nthreads = omp_nthreads ,
235- skull_strip_template = skull_strip_template ,
236- skull_strip_fixed_seed = skull_strip_fixed_seed ,
237- freesurfer = freesurfer ,
238- output_spaces = output_spaces ,
239- medial_surface_nan = medial_surface_nan ,
240- cifti_output = cifti_output ,
241- hires = hires ,
242- use_bbr = use_bbr ,
222+ aroma_melodic_dim = aroma_melodic_dim ,
243223 bold2t1w_dof = bold2t1w_dof ,
224+ cifti_output = cifti_output ,
225+ debug = debug ,
226+ echo_idx = echo_idx ,
227+ err_on_aroma_warn = err_on_aroma_warn ,
244228 fmap_bspline = fmap_bspline ,
245229 fmap_demean = fmap_demean ,
246- use_syn = use_syn ,
247230 force_syn = force_syn ,
248- use_aroma = use_aroma ,
249- aroma_melodic_dim = aroma_melodic_dim ,
250- err_on_aroma_warn = err_on_aroma_warn ,
231+ freesurfer = freesurfer ,
232+ hires = hires ,
233+ ignore = ignore ,
234+ layout = layout ,
235+ longitudinal = longitudinal ,
236+ low_mem = low_mem ,
237+ medial_surface_nan = medial_surface_nan ,
238+ name = "single_subject_" + subject_id + "_wf" ,
239+ omp_nthreads = omp_nthreads ,
240+ output_dir = output_dir ,
241+ output_spaces = output_spaces ,
251242 regressors_all_comps = regressors_all_comps ,
252- regressors_fd_th = regressors_fd_th ,
253243 regressors_dvars_th = regressors_dvars_th ,
244+ regressors_fd_th = regressors_fd_th ,
245+ reportlets_dir = reportlets_dir ,
246+ skull_strip_fixed_seed = skull_strip_fixed_seed ,
247+ skull_strip_template = skull_strip_template ,
248+ subject_id = subject_id ,
249+ t2s_coreg = t2s_coreg ,
250+ task_id = task_id ,
251+ use_aroma = use_aroma ,
252+ use_bbr = use_bbr ,
253+ use_syn = use_syn ,
254254 )
255255
256256 single_subject_wf .config ['execution' ]['crashdump_dir' ] = (
@@ -345,7 +345,7 @@ def init_single_subject_wf(
345345 ('T1w', {}), ('fsnative', {})]),
346346 reportlets_dir='.',
347347 regressors_all_comps=False,
348- regressors_dvars_th=1.5
348+ regressors_dvars_th=1.5,
349349 regressors_fd_th=0.5,
350350 skull_strip_fixed_seed=False,
351351 skull_strip_template='OASIS30ANTs',
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