diff --git a/modules/nf-core/mobster/environment.yml b/modules/nf-core/mobster/environment.yml index bd95c5f658fd..7044a59c7ccd 100644 --- a/modules/nf-core/mobster/environment.yml +++ b/modules/nf-core/mobster/environment.yml @@ -2,7 +2,7 @@ channels: - conda-forge - bioconda dependencies: - - bioconda::r-cnaqc=1.1.2 + - bioconda::r-cnaqc=1.1.3 - bioconda::r-mobster=0.1.1 - conda-forge::r-cli=3.6.5 - conda-forge::r-dplyr=1.1.4 diff --git a/modules/nf-core/mobster/main.nf b/modules/nf-core/mobster/main.nf index 4a7b30ab7500..c8a45d3398e7 100644 --- a/modules/nf-core/mobster/main.nf +++ b/modules/nf-core/mobster/main.nf @@ -4,8 +4,8 @@ process MOBSTER { conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/de/de31ce602ca40639c817dcd0f99f0260719a9a5f269759791d03576491ea3e87/data': - 'community.wave.seqera.io/library/r-cnaqc_r-mobster_r-cli_r-dplyr_r-ggplot2:96c0dbada588b39a' }" + 'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c9/c9ef4992af6754a36358a4fc7a52bdc3928c012070f06140a44ddcf174da4e62/data': + 'community.wave.seqera.io/library/r-cnaqc_r-mobster_r-cli_r-dplyr_r-ggplot2:5a94f700b38065ea' }" input: tuple val(meta), path(rds_join) diff --git a/modules/nf-core/mobster/templates/main_script.R b/modules/nf-core/mobster/templates/main_script.R index 810dd7c9a127..175c89b976a7 100644 --- a/modules/nf-core/mobster/templates/main_script.R +++ b/modules/nf-core/mobster/templates/main_script.R @@ -76,6 +76,7 @@ run_mobster_fit = function(joint_table, descr) { tail = eval(parse(text=opt[["tail"]])), pi_cutoff = as.numeric(opt[["pi_cutoff"]]), N_cutoff = as.integer(opt[["n_cutoff"]]), + parallel = FALSE, description = descr) } diff --git a/modules/nf-core/mobster/tests/main.nf.test.snap b/modules/nf-core/mobster/tests/main.nf.test.snap index a41717285bc9..559fb1943315 100644 --- a/modules/nf-core/mobster/tests/main.nf.test.snap +++ b/modules/nf-core/mobster/tests/main.nf.test.snap @@ -2,26 +2,26 @@ "test rds input": { "content": [ [ - "versions.yml:md5,233827868ca632b6611b69337aa5de2b" + "versions.yml:md5,33352102a5ea4278214d90ca36bb4425" ] ], "meta": { "nf-test": "0.9.2", - "nextflow": "25.04.3" + "nextflow": "25.10.2" }, - "timestamp": "2025-07-21T18:19:29.811857" + "timestamp": "2026-01-21T15:14:16.168458" }, "test csv input": { "content": [ [ - "versions.yml:md5,233827868ca632b6611b69337aa5de2b" + "versions.yml:md5,33352102a5ea4278214d90ca36bb4425" ] ], "meta": { "nf-test": "0.9.2", - "nextflow": "25.04.3" + "nextflow": "25.10.2" }, - "timestamp": "2025-07-21T18:23:21.783643" + "timestamp": "2026-01-21T15:18:45.141969" }, "test csv input - stub": { "content": [ @@ -87,7 +87,7 @@ ] ], "6": [ - "versions.yml:md5,75c7b43f6746354f65b3534ce8949372" + "versions.yml:md5,af4bfdb43f7b9a49e026f4508be7ea96" ], "mobster_best_plots_rds": [ [ @@ -150,15 +150,15 @@ ] ], "versions": [ - "versions.yml:md5,75c7b43f6746354f65b3534ce8949372" + "versions.yml:md5,af4bfdb43f7b9a49e026f4508be7ea96" ] } ], "meta": { "nf-test": "0.9.2", - "nextflow": "25.04.7" + "nextflow": "25.10.2" }, - "timestamp": "2025-09-17T13:03:15.343446" + "timestamp": "2026-01-21T15:20:46.541349" }, "test rds input - stub": { "content": [ @@ -224,7 +224,7 @@ ] ], "6": [ - "versions.yml:md5,75c7b43f6746354f65b3534ce8949372" + "versions.yml:md5,af4bfdb43f7b9a49e026f4508be7ea96" ], "mobster_best_plots_rds": [ [ @@ -287,14 +287,14 @@ ] ], "versions": [ - "versions.yml:md5,75c7b43f6746354f65b3534ce8949372" + "versions.yml:md5,af4bfdb43f7b9a49e026f4508be7ea96" ] } ], "meta": { "nf-test": "0.9.2", - "nextflow": "25.04.7" + "nextflow": "25.10.2" }, - "timestamp": "2025-09-17T12:59:01.526617" + "timestamp": "2026-01-21T15:16:09.445968" } } \ No newline at end of file