diff --git a/.changeset/stdio-kill-process-tree.md b/.changeset/stdio-kill-process-tree.md
new file mode 100644
index 0000000000..6200318f1c
--- /dev/null
+++ b/.changeset/stdio-kill-process-tree.md
@@ -0,0 +1,5 @@
+---
+'@modelcontextprotocol/client': minor
+---
+
+Add an opt-in `killProcessTree` option to `StdioClientTransport`. When enabled, `close()` tears down the entire process tree — the child is spawned as its own process-group leader on POSIX (signalled via the process group) and torn down with `taskkill /T /F` on Windows — preventing orphaned server processes when the server is launched through a wrapper such as `npx`, `uvx`, or `python -m`. Defaults to `false`, preserving existing signal-propagation behaviour. Fixes #2023.
diff --git a/packages/client/src/client/stdio.ts b/packages/client/src/client/stdio.ts
index a4664e1c93..6229d2470f 100644
--- a/packages/client/src/client/stdio.ts
+++ b/packages/client/src/client/stdio.ts
@@ -46,6 +46,19 @@ export type StdioServerParameters = {
      * Defaults to 10 MB.
      */
     maxBufferSize?: number;
+
+    /**
+     * Kill the entire process tree when {@linkcode StdioClientTransport.close} is called.
+     *
+     * MCP servers are commonly launched through a wrapper (`npx`, `uvx`, `python -m`).
+     * `ChildProcess.kill()` signals only the direct child, so the wrapper's children survive
+     * as orphans. When this is `true`, the child is spawned as its own process-group leader
+     * (POSIX) and `close()` signals the whole group; on Windows the tree is torn down with
+     * `taskkill /T /F`.
+     *
+     * Defaults to `false`, preserving the current signal-propagation behaviour.
+     */
+    killProcessTree?: boolean;
 };
 
 /**
@@ -135,6 +148,9 @@ export class StdioClientTransport implements Transport {
                 },
                 stdio: ['pipe', 'pipe', this._serverParams.stderr ?? 'inherit'],
                 shell: false,
+                // Own process group, so close() can signal the whole tree. Windows has no
+                // process groups in this sense; `taskkill /T` covers it there.
+                detached: this._serverParams.killProcessTree === true && process.platform !== 'win32',
                 windowsHide: process.platform === 'win32',
                 cwd: this._serverParams.cwd
             });
@@ -201,6 +217,38 @@ export class StdioClientTransport implements Transport {
         return this._process?.pid ?? null;
     }
 
+    /**
+     * Signal the child, or its whole tree when `killProcessTree` is set.
+     * Always falls back to the plain single-process kill.
+     */
+    private _signalProcess(proc: ChildProcess, signal: 'SIGTERM' | 'SIGKILL'): void {
+        const pid = proc.pid;
+
+        if (!this._serverParams.killProcessTree || pid === undefined) {
+            proc.kill(signal);
+            return;
+        }
+
+        if (process.platform === 'win32') {
+            try {
+                spawn('taskkill', ['/pid', String(pid), '/T', '/F'], { stdio: 'ignore' });
+                return;
+            } catch {
+                // fall through to the direct kill below
+            }
+        } else {
+            try {
+                // Negative pid addresses the group created by `detached: true`.
+                process.kill(-pid, signal);
+                return;
+            } catch {
+                // Group already gone, or we never became the leader.
+            }
+        }
+
+        proc.kill(signal);
+    }
+
     private processReadBuffer() {
         while (true) {
             try {
@@ -292,7 +340,7 @@ export class StdioClientTransport implements Transport {
 
             if (processToClose.exitCode === null) {
                 try {
-                    processToClose.kill('SIGTERM');
+                    this._signalProcess(processToClose, 'SIGTERM');
                 } catch {
                     // ignore
                 }
@@ -302,7 +350,7 @@ export class StdioClientTransport implements Transport {
 
             if (processToClose.exitCode === null) {
                 try {
-                    processToClose.kill('SIGKILL');
+                    this._signalProcess(processToClose, 'SIGKILL');
                 } catch {
                     // ignore
                 }
diff --git a/packages/client/test/client/stdioKillProcessTree.test.ts b/packages/client/test/client/stdioKillProcessTree.test.ts
new file mode 100644
index 0000000000..f9e3895ca7
--- /dev/null
+++ b/packages/client/test/client/stdioKillProcessTree.test.ts
@@ -0,0 +1,42 @@
+import { existsSync, readFileSync } from 'node:fs';
+import { tmpdir } from 'node:os';
+
+import { StdioClientTransport } from '../../src/client/stdio';
+
+test('killProcessTree terminates grandchildren spawned by a wrapper', async () => {
+    // The npx/uvx anatomy: the direct child is a wrapper that spawns the real server.
+    // Without process-group teardown the grandchild outlives close() as an orphan.
+    if (process.platform === 'win32') return; // taskkill path is covered manually
+
+    const pidFile = `${tmpdir()}/mcp-tree-${process.pid}-${Date.now()}`;
+    const WRAPPER_SCRIPT = String.raw`
+        const { spawn } = require('child_process');
+        const child = spawn(process.execPath, ['-e', 'setInterval(() => {}, 1000)'], { stdio: 'ignore' });
+        require('fs').writeFileSync(${JSON.stringify(pidFile)}, String(child.pid));
+        setInterval(() => {}, 1000);
+    `;
+
+    const transport = new StdioClientTransport({
+        command: process.execPath,
+        args: ['-e', WRAPPER_SCRIPT],
+        killProcessTree: true
+    });
+    await transport.start();
+
+    while (!existsSync(pidFile)) await new Promise(resolve => setTimeout(resolve, 25));
+    const grandchildPid = Number(readFileSync(pidFile, 'utf8'));
+    expect(() => process.kill(grandchildPid, 0)).not.toThrow();
+
+    await transport.close();
+
+    // The group signal is delivered asynchronously; give it a moment to land.
+    for (let i = 0; i < 40; i++) {
+        try {
+            process.kill(grandchildPid, 0);
+        } catch {
+            return; // gone — the tree was reaped
+        }
+        await new Promise(resolve => setTimeout(resolve, 25));
+    }
+    throw new Error(`grandchild ${grandchildPid} survived close()`);
+}, 15_000);