Issues

TrimReads for popoolation error
magicDGS/ReadTools#534 · opened on Jul 12, 2021
How to extract the UMI info in illumina read's name into a seperate tag
magicDGS/ReadTools#533 · opened on Nov 11, 2019
1
GemMappabilityToBed has problems with some invalid characters in mappability files
magicDGS/ReadTools#531 · opened on Oct 19, 2018
1
DownloadDistmapResult fails with many parts
magicDGS/ReadTools#530 · opened on Oct 18, 2018
1
Better support for read groups in distmap integration
magicDGS/ReadTools#518 · opened on Aug 24, 2018
1
Create a way to identify issues for beginners/newcomers
magicDGS/ReadTools#515 · opened on Aug 24, 2018
Support mixed dual/single indexed files in AssignReadGroupByBarcode
magicDGS/ReadTools#512 · opened on Aug 23, 2018
9
ReadsToDistmap: do not require maxReadLength
magicDGS/ReadTools#508 · opened on Aug 20, 2018
2
Decide new theme or create one for help pages
magicDGS/ReadTools#507 · opened on Aug 14, 2018
Migrate docs to its own repository (or gh-pages branch)
magicDGS/ReadTools#506 · opened on Aug 6, 2018
Move javadoc documentation to a service (or gh-pages branch)
magicDGS/ReadTools#505 · opened on Aug 6, 2018
1
Start publishing ReadTools versions in maven central
magicDGS/ReadTools#504 · opened on Aug 6, 2018
3
Add support for indexing GemMappabilityToBed output
magicDGS/ReadTools#498 · opened on Jul 27, 2018
Add GemScoreMethod for "mappability sensu stricto"
magicDGS/ReadTools#494 · opened on Jul 27, 2018
Create factory for IO stream creation to be used reads but also other files
magicDGS/ReadTools#493 · opened on Jul 27, 2018
Support block-compressed FASTA reference
magicDGS/ReadTools#489 · opened on Jul 26, 2018
Investigate performance of buffering for GemMappabilityReader
magicDGS/ReadTools#486 · opened on Jul 25, 2018
Force line-endings for UNIX on writers
magicDGS/ReadTools#484 · opened on Jul 15, 2018
Accept compressed gem-mappability inputs
magicDGS/ReadTools#482 · opened on Jul 15, 2018
Add more unit tests to gem-mappability classes
magicDGS/ReadTools#481 · opened on Jul 15, 2018
ComputeProperStatByWindow --stat does not show possible values in webpage
magicDGS/ReadTools#469 · opened on Jun 5, 2018
1
Enhancements for ComputeProperStatByWindow
magicDGS/ReadTools#466 · opened on Jun 5, 2018
Decide defaults for RTReadWalker
magicDGS/ReadTools#465 · opened on Jun 5, 2018
Test RTHelpConstants static logging methods
magicDGS/ReadTools#460 · opened on Jun 1, 2018
Improve output format for ProperStatWindowEngine
magicDGS/ReadTools#459 · opened on Jun 1, 2018