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"test_*.py" +python_classes = "Test*" +python_functions = "test_*" +markers = [ + "unit: marks tests as unit tests (fast, isolated)", + "integration: marks tests as integration tests (slower, may have dependencies)", + "slow: marks tests as slow (deselect with '-m \"not slow\"')", +] + +[tool.coverage.run] +source = ["stn"] +branch = true +parallel = true +omit = [ + "*/tests/*", + "*/test_*.py", + "*/__pycache__/*", + "*/site-packages/*", +] + +[tool.coverage.report] +precision = 2 +show_missing = true +skip_covered = false +exclude_lines = [ + "pragma: no cover", + "def __repr__", + "def __str__", + "raise AssertionError", + "raise NotImplementedError", + "if __name__ == .__main__.:", + "if TYPE_CHECKING:", + "if typing.TYPE_CHECKING:", + "@overload", + "@abstractmethod", +] + +[tool.coverage.html] +directory = "htmlcov" + +[tool.coverage.xml] +output = "coverage.xml" + +[build-system] +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" \ No newline at end of file diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..2448f6b --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,145 @@ +import os +import tempfile +import shutil +from pathlib import Path +from typing import Generator, Dict, Any + +import pytest +import numpy as np + + +@pytest.fixture +def temp_dir() -> Generator[Path, None, None]: + """Create a temporary directory for test files.""" + temp_path = tempfile.mkdtemp() + yield Path(temp_path) + shutil.rmtree(temp_path) + + +@pytest.fixture +def mock_config() -> Dict[str, Any]: + """Provide a mock configuration dictionary for testing.""" + return { + "batch_size": 32, + "learning_rate": 0.001, + "epochs": 10, + "image_size": (224, 224), + "num_classes": 10, + "device": "cpu", + } + + +@pytest.fixture +def sample_numpy_array() -> np.ndarray: + """Generate a sample numpy array for testing.""" + np.random.seed(42) + return np.random.randn(10, 224, 224, 3).astype(np.float32) + + +@pytest.fixture +def sample_batch() -> Dict[str, np.ndarray]: + """Generate a sample batch of data for testing.""" + np.random.seed(42) + batch_size = 4 + height, width, channels = 28, 28, 1 + + return { + "images": np.random.randn(batch_size, height, width, channels).astype(np.float32), + "labels": np.random.randint(0, 10, size=(batch_size,)), + "theta": np.array([[1, 0, 0, 0, 1, 0]] * batch_size).astype(np.float32), + } + + +@pytest.fixture +def identity_theta() -> np.ndarray: + """Return identity transformation parameters.""" + return np.array([1, 0, 0, 0, 1, 0], dtype=np.float32) + + +@pytest.fixture +def mock_tensorflow_session(): + """Mock TensorFlow session for testing without GPU.""" + try: + import tensorflow as tf + # Configure TensorFlow to use CPU only for tests + os.environ['CUDA_VISIBLE_DEVICES'] = '-1' + + if hasattr(tf, 'config'): + # TF 2.x + physical_devices = tf.config.list_physical_devices('GPU') + for device in physical_devices: + tf.config.set_memory_growth(device, True) + + return tf.Session() if hasattr(tf, 'Session') else None + except ImportError: + pytest.skip("TensorFlow not installed") + + +@pytest.fixture(autouse=True) +def cleanup_tensorflow(): + """Clean up TensorFlow resources after each test.""" + yield + try: + import tensorflow as tf + if hasattr(tf, 'keras'): + tf.keras.backend.clear_session() + elif hasattr(tf, 'reset_default_graph'): + tf.reset_default_graph() + except ImportError: + pass + + +@pytest.fixture +def sample_image_path(temp_dir: Path) -> Path: + """Create a sample image file for testing.""" + image_path = temp_dir / "test_image.npy" + np.save(image_path, np.random.randn(224, 224, 3)) + return image_path + + +@pytest.fixture +def mock_model_weights(temp_dir: Path) -> Path: + """Create mock model weights file.""" + weights_path = temp_dir / "model_weights.npy" + weights = { + "conv1": np.random.randn(3, 3, 3, 32), + "conv2": np.random.randn(3, 3, 32, 64), + "fc1": np.random.randn(1024, 256), + "fc2": np.random.randn(256, 6), + } + np.save(weights_path, weights) + return weights_path + + +@pytest.fixture(scope="session") +def test_data_dir() -> Path: + """Return the path to test data directory.""" + return Path(__file__).parent / "test_data" + + +def pytest_configure(config): + """Configure pytest with custom settings.""" + # Add custom markers descriptions + config.addinivalue_line( + "markers", "unit: mark test as a unit test" + ) + config.addinivalue_line( + "markers", "integration: mark test as an integration test" + ) + config.addinivalue_line( + "markers", "slow: mark test as slow running" + ) + + +def pytest_collection_modifyitems(config, items): + """Modify test collection to add markers based on test location.""" + for item in items: + # Add markers based on test file location + if "unit" in str(item.fspath): + item.add_marker(pytest.mark.unit) + elif "integration" in str(item.fspath): + item.add_marker(pytest.mark.integration) + + # Mark tests that have 'slow' in their name + if "slow" in item.nodeid: + item.add_marker(pytest.mark.slow) \ No newline at end of file diff --git a/tests/integration/__init__.py b/tests/integration/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/tests/test_setup_validation.py b/tests/test_setup_validation.py new file mode 100644 index 0000000..a40dcd2 --- /dev/null +++ b/tests/test_setup_validation.py @@ -0,0 +1,125 @@ +"""Validation tests to ensure the testing infrastructure is properly set up.""" +import sys +from pathlib import Path + +import pytest +import numpy as np + + +class TestSetupValidation: + """Test class to validate the testing infrastructure.""" + + @pytest.mark.unit + def test_pytest_installed(self): + """Verify pytest is installed and importable.""" + assert pytest.__version__ + + @pytest.mark.unit + def test_coverage_plugin_available(self): + """Verify pytest-cov plugin is available.""" + import pytest_cov + assert pytest_cov + + @pytest.mark.unit + def test_mock_plugin_available(self): + """Verify pytest-mock plugin is available.""" + import pytest_mock + assert pytest_mock + + @pytest.mark.unit + def test_project_importable(self): + """Verify the stn package can be imported.""" + try: + import stn + assert stn + except ImportError as e: + if "tensorflow" in str(e): + pytest.skip("TensorFlow not installed (optional dependency)") + else: + raise + + @pytest.mark.unit + def test_fixtures_available(self, temp_dir, mock_config, sample_numpy_array): + """Verify custom fixtures are available and working.""" + assert temp_dir.exists() + assert isinstance(mock_config, dict) + assert isinstance(sample_numpy_array, np.ndarray) + + @pytest.mark.unit + def test_markers_configured(self, request): + """Verify custom markers are properly configured.""" + markers = [marker.name for marker in request.node.iter_markers()] + assert 'unit' in markers + + @pytest.mark.integration + def test_integration_marker(self, request): + """Test that integration marker works.""" + markers = [marker.name for marker in request.node.iter_markers()] + assert 'integration' in markers + + @pytest.mark.slow + @pytest.mark.unit + def test_slow_marker(self, request): + """Test that slow marker works.""" + markers = [marker.name for marker in request.node.iter_markers()] + assert 'slow' in markers + assert 'unit' in markers + + @pytest.mark.unit + def test_temp_dir_fixture(self, temp_dir): + """Test temporary directory fixture creates and cleans up properly.""" + test_file = temp_dir / "test.txt" + test_file.write_text("test content") + assert test_file.exists() + assert test_file.read_text() == "test content" + + @pytest.mark.unit + def test_sample_batch_fixture(self, sample_batch): + """Test sample batch fixture provides correct data structure.""" + assert 'images' in sample_batch + assert 'labels' in sample_batch + assert 'theta' in sample_batch + + assert sample_batch['images'].shape == (4, 28, 28, 1) + assert sample_batch['labels'].shape == (4,) + assert sample_batch['theta'].shape == (4, 6) + + @pytest.mark.unit + def test_identity_theta_fixture(self, identity_theta): + """Test identity theta fixture returns correct transformation.""" + expected = np.array([1, 0, 0, 0, 1, 0], dtype=np.float32) + np.testing.assert_array_equal(identity_theta, expected) + + @pytest.mark.unit + def test_coverage_configured(self): + """Verify coverage is properly configured.""" + # This test will pass if coverage is running + # The actual verification happens when running with coverage + assert True + + @pytest.mark.unit + @pytest.mark.parametrize("value,expected", [ + (1, 1), + (2, 4), + (3, 9), + ]) + def test_parametrize_works(self, value, expected): + """Verify pytest parametrize decorator works.""" + assert value ** 2 == expected + + +@pytest.mark.unit +def test_module_level_test(): + """Test that module-level tests work.""" + assert True + + +def test_poetry_scripts_configured(): + """Test that poetry run test and poetry run tests commands are configured.""" + pyproject_path = Path(__file__).parent.parent / "pyproject.toml" + assert pyproject_path.exists() + + content = pyproject_path.read_text() + assert "[tool.poetry.scripts]" in content + assert 'test = "pytest:main"' in content + assert 'tests = "pytest:main"' in content \ No newline at end of file diff --git a/tests/unit/__init__.py b/tests/unit/__init__.py new file mode 100644 index 0000000..e69de29