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Legacy

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The legacy/ directory contains older Bash-based scripts that predate the current Python implementation. They are kept for historical reference but are no longer maintained or recommended.

execution-metrics-collector.sh

The original Bash wrapper for launching a command and monitoring it. It runs the command in the background, captures the PID, and calls process-metrics-collector directly:

./legacy/execution-metrics-collector.sh {base_metrics_directory} {command} {args...}

This has been superseded by execution-metrics-collector, which provides the same functionality in a more portable and maintainable way. The sample series included in this repository was originally collected using this script:

~/projects/treecript/legacy/execution-metrics-collector.sh \
  ~/projects/treecript/Wetlab2Variations_metrics \
  python WfExS-backend.py -L workflow_examples/local_config.yaml \
  staged-workdir offline-exec 01a1db90-1508-4bad-beb7-7f7989838542

plotGraph.sh

The original gnuplot-based visualization script. It reads the collected CSV files and generates .pdf charts using gnuplot (requires apt install gnuplot). It has been superseded by plotGraph, which generates richer charts without requiring gnuplot.

./legacy/plotGraph.sh {metrics_csv_files...}

plot-metrics.sh

An earlier helper script for plotting individual metric files. Also superseded by plotGraph.

These scripts are no longer actively maintained. For all new usage, prefer the Python equivalents.