From a06fd40bdcfa4cc052d7fb2ff6109f6762d9c661 Mon Sep 17 00:00:00 2001 From: epivitae Date: Wed, 14 Jan 2026 13:55:59 +0800 Subject: [PATCH 1/4] Update RIA-J documentation: add DOI badge, correct author title, and enhance citation details --- _pages/plugins/ria-j.md | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/_pages/plugins/ria-j.md b/_pages/plugins/ria-j.md index 00235e6e2..a10ecb4a5 100644 --- a/_pages/plugins/ria-j.md +++ b/_pages/plugins/ria-j.md @@ -15,11 +15,13 @@ team-maintainers: ['@Epivitae'] {%- assign dev-status = page.dev-status -%} {%- unless team-maintainers -%} {%- assign team-maintainers = page.team-maintainer -%} {%- endunless -%} +[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.18204761.svg)](https://doi.org/10.5281/zenodo.18204761) + **RIA-J (Ratio Imaging Analyzer - Java Edition)** is a lightweight, high-performance ImageJ/Fiji plugin designed for interactive ratiometric fluorescence analysis. -Developed by **Kui Wang** at the Center for Excellence in Brain Science and Intelligence Technology (CEBSIT), Chinese Academy of Sciences, it serves as the native Java counterpart to the Python-based RIA software. +Developed by **Dr. Kui Wang** at the Center for Excellence in Brain Science and Intelligence Technology (CEBSIT), Chinese Academy of Sciences, it serves as the native Java counterpart to the Python-based RIA software. -Author: Kui Wang, CEBSIT, CAS. For questions please use the [GitHub Issues](https://github.com/Epivitae/RIA-J/issues) or tag @Epivitae on image.sc. +Author: [Kui Wang](www.cns.ac.cn), CEBSIT, CAS. For questions please use the [GitHub Issues](https://github.com/Epivitae/RIA-J/issues) or tag @Epivitae on image.sc. ## Key Features @@ -52,12 +54,11 @@ RIA-J is distributed via an official Fiji Update Site. If you use this software in your research, please cite the permanent Zenodo record: -{% include citation - text="Wang, K. (2026). RIA-J: Ratio Imaging Analyzer (Java) - Interactive Ratiometric Analysis for ImageJ/Fiji. Zenodo." - doi="10.5281/zenodo.18200077" -%} +Wang, K. (2026). RIA-J: Ratio Imaging Analyzer (Java) - Publication-Grade Ratiometric Analysis for ImageJ/Fiji (v2.0.0). Zenodo. https://doi.org/10.5281/zenodo.18204761 -* **Repository**: [https://github.com/Epivitae/RIA-J](https://github.com/Epivitae/RIA-J) + +* **Repository**: [https://github.com/Epivitae/RIA-J](https://github.com/Epivitae/RIA-J) +* **CNS Team**: [Chimeric Nano Sensor Team](https://www.cns.ac.cn/) --- *Developed by Kui Wang © 2026. Part of the development for genetically encoded indicators, including GEM-CPPU1.0 and phosphate (Pi) probes.* \ No newline at end of file From aa26405fc138043dd829cbb66f68651cb0d9ce69 Mon Sep 17 00:00:00 2001 From: epivitae Date: Wed, 14 Jan 2026 14:47:02 +0800 Subject: [PATCH 2/4] Kui Wang's wiki page --- _pages/people/kwang.md | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) create mode 100644 _pages/people/kwang.md diff --git a/_pages/people/kwang.md b/_pages/people/kwang.md new file mode 100644 index 000000000..f916498e9 --- /dev/null +++ b/_pages/people/kwang.md @@ -0,0 +1,22 @@ +--- +title: Kui Wang + +name: Kui Wang +website: https://www.cns.ac.cn +gravatar: cea731816b60218856b6326f4b0e8e41 +affiliation: + - Institute of Neurosciences (ION) | http://www.ion.ac.cn/ + - Center for Excellence in Brain Science and Intelligence Technology (CEBSIT) | https://cebsit.cas.cn/ + - Chinese Academy of Sciences(CAS) | https://www.cas.ac.cn/ + - Chimeric Nano Sensor (CNS) Team | https://www.cns.ac.cn/ +forum: Epivitae +github: Epivitae +stackoverflow: +openhub: +twitter: bio_sensor +researchgate: Kui-Wang-37 +orcid: 0000-0002-9436-3632 +scholar: RFAVjC4AAAAJ +--- + +Nihao! \ No newline at end of file From 53c0693cf4a3af392b14d6c226f45c4d1ae860fd Mon Sep 17 00:00:00 2001 From: epivitae Date: Wed, 14 Jan 2026 15:05:08 +0800 Subject: [PATCH 3/4] Fix affiliation typos and enhance Kui Wang's profile with additional biosensor tools and installation instructions --- _pages/people/kwang.md | 36 ++++++++++++++++++++++++++++++++---- 1 file changed, 32 insertions(+), 4 deletions(-) diff --git a/_pages/people/kwang.md b/_pages/people/kwang.md index f916498e9..801c110df 100644 --- a/_pages/people/kwang.md +++ b/_pages/people/kwang.md @@ -1,13 +1,12 @@ --- title: Kui Wang - name: Kui Wang website: https://www.cns.ac.cn gravatar: cea731816b60218856b6326f4b0e8e41 affiliation: - - Institute of Neurosciences (ION) | http://www.ion.ac.cn/ + - Institute of Neuroscience (ION) | http://www.ion.ac.cn/ - Center for Excellence in Brain Science and Intelligence Technology (CEBSIT) | https://cebsit.cas.cn/ - - Chinese Academy of Sciences(CAS) | https://www.cas.ac.cn/ + - Chinese Academy of Sciences (CAS) | https://www.cas.ac.cn/ - Chimeric Nano Sensor (CNS) Team | https://www.cns.ac.cn/ forum: Epivitae github: Epivitae @@ -19,4 +18,33 @@ orcid: 0000-0002-9436-3632 scholar: RFAVjC4AAAAJ --- -Nihao! \ No newline at end of file +I am a Postdoctoral Fellow at the Institute of Neuroscience (ION), CAS, where I lead the **[Chimeric Nano Sensor (CNS) Team](https://www.cns.ac.cn)**. My research focuses on the development of genetically encoded fluorescent biosensors and their application in studying neurochemical dynamics in live animals. + +
+
+ +Below are the open-source software tools I developed to facilitate imaging analysis. + +### 🔬 Biosensor Tools + +A collection of ImageJ/Fiji plugins for ratiometric imaging, motion correction, and workspace management. + +**📥 Installation via Fiji Update Site** +To install or update these plugins, please use the **Biosensor Tools** update site: +1. Open Fiji and navigate to `Help > Update...` +2. Click `Manage update sites`. +3. Click `Add update site` and fill in: + - **Name:** Biosensor Tools + - **URL:** `https://sites.imagej.net/Biosensor-Tools/` +4. Close the window and click `Apply changes`. + +
+
+ +**🛠️ Plugin List** + +| Plugin | Description | Links | +| :--- | :--- | :--- | +| **RIA-J** (Ratio Imaging Analyzer) | Publication-grade analysis for ratiometric biosensors. Features background subtraction, pixel-by-pixel ratio calculation, and IMD mode. | [Wiki](https://imagej.net/plugins/ria-j) / [GitHub](https://github.com/Epivitae/RIA-J) | +| **FIA** (Fluorescence Image Analyzer) | A robust tool for image registration and motion correction. Designed to stabilize live-animal time-lapse datasets before quantification. | [GitHub](https://github.com/Epivitae/FIA) | +| **WinMan** (Window Manager) | A workflow utility for efficiently managing the ImageJ workspace. Allows tiling, organizing, and controlling multiple image/result windows simultaneously. | [GitHub](https://github.com/Epivitae/WinMan) | \ No newline at end of file From 2fa99aa9c94fafd16f37e3ef063f4696533656ce Mon Sep 17 00:00:00 2001 From: epivitae Date: Wed, 14 Jan 2026 15:11:22 +0800 Subject: [PATCH 4/4] Update Kui Wang's profile: rename "Biosensor Tools" to "Biosensor Tools (Suite)" for clarity --- _pages/people/kwang.md | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/_pages/people/kwang.md b/_pages/people/kwang.md index 801c110df..a9c59d37d 100644 --- a/_pages/people/kwang.md +++ b/_pages/people/kwang.md @@ -25,10 +25,13 @@ I am a Postdoctoral Fellow at the Institute of Neuroscience (ION), CAS, where I Below are the open-source software tools I developed to facilitate imaging analysis. -### 🔬 Biosensor Tools +### 🔬 Biosensor Tools (Suite) A collection of ImageJ/Fiji plugins for ratiometric imaging, motion correction, and workspace management. +
+
+ **📥 Installation via Fiji Update Site** To install or update these plugins, please use the **Biosensor Tools** update site: 1. Open Fiji and navigate to `Help > Update...`