diff --git a/config.json b/config.json index dc0f1c4..dc07d22 100644 --- a/config.json +++ b/config.json @@ -213,6 +213,14 @@ "prerequisites": [], "difficulty": 4 }, + { + "slug": "protein-translation", + "name": "Protein Translation", + "uuid": "5d9917ca-8c09-431f-b5dd-71a338b9b497", + "practices": [], + "prerequisites": [], + "difficulty": 4 + }, { "slug": "word-count", "name": "Word Count", diff --git a/exercises/practice/protein-translation/.docs/instructions.md b/exercises/practice/protein-translation/.docs/instructions.md new file mode 100644 index 0000000..35c953b --- /dev/null +++ b/exercises/practice/protein-translation/.docs/instructions.md @@ -0,0 +1,38 @@ +# Instructions + +Your job is to translate RNA sequences into proteins. + +RNA strands are made up of three-nucleotide sequences called **codons**. +Each codon translates to an **amino acid**. +When joined together, those amino acids make a protein. + +In the real world, there are 64 codons, which in turn correspond to 20 amino acids. +However, for this exercise, you’ll only use a few of the possible 64. +They are listed below: + +| Codon | Amino Acid | +| ------------------ | ------------- | +| AUG | Methionine | +| UUU, UUC | Phenylalanine | +| UUA, UUG | Leucine | +| UCU, UCC, UCA, UCG | Serine | +| UAU, UAC | Tyrosine | +| UGU, UGC | Cysteine | +| UGG | Tryptophan | +| UAA, UAG, UGA | STOP | + +For example, the RNA string “AUGUUUUCU” has three codons: “AUG”, “UUU” and “UCU”. +These map to Methionine, Phenylalanine, and Serine. + +## “STOP” Codons + +You’ll note from the table above that there are three **“STOP” codons**. +If you encounter any of these codons, ignore the rest of the sequence — the protein is complete. + +For example, “AUGUUUUCUUAAAUG” contains a STOP codon (“UAA”). +Once we reach that point, we stop processing. +We therefore only consider the part before it (i.e. “AUGUUUUCU”), not any further codons after it (i.e. “AUG”). + +Learn more about [protein translation on Wikipedia][protein-translation]. + +[protein-translation]: https://en.wikipedia.org/wiki/Translation_(biology) diff --git a/exercises/practice/protein-translation/.gitignore b/exercises/practice/protein-translation/.gitignore new file mode 100644 index 0000000..f90a88d --- /dev/null +++ b/exercises/practice/protein-translation/.gitignore @@ -0,0 +1,2 @@ +node_modules +**/*.res.js \ No newline at end of file diff --git a/exercises/practice/protein-translation/.meta/ProteinTranslation.res b/exercises/practice/protein-translation/.meta/ProteinTranslation.res new file mode 100644 index 0000000..9bdf60c --- /dev/null +++ b/exercises/practice/protein-translation/.meta/ProteinTranslation.res @@ -0,0 +1,43 @@ +type codons = + | Methionine + | Phenylalanine + | Leucine + | Serine + | Tyrosine + | Cysteine + | Tryptophan + | STOP + +let strandToCodon = strand => { + switch strand { + | "AUG" => Some(Methionine) + | "UUU" | "UUC" => Some(Phenylalanine) + | "UUA" | "UUG" => Some(Leucine) + | "UCU" | "UCC" | "UCA" | "UCG" => Some(Serine) + | "UAU" | "UAC" => Some(Tyrosine) + | "UGU" | "UGC" => Some(Cysteine) + | "UGG" => Some(Tryptophan) + | "UAA" | "UAG" | "UGA" => Some(STOP) + | _ => None + } +} + +let proteins = strand => { + let len = String.length(strand) + + let rec aux = (index, acc) => { + if index >= len { + Some(acc->List.toArray->Array.toReversed) + } else { + let chunk = String.substring(strand, ~start=index, ~end=index + 3) + + switch strandToCodon(chunk) { + | Some(STOP) => Some(acc->List.toArray->Array.toReversed) + | Some(codon) => aux(index + 3, list{codon, ...acc}) + | None => None + } + } + } + + aux(0, list{}) +} diff --git a/exercises/practice/protein-translation/.meta/ProteinTranslation.resi b/exercises/practice/protein-translation/.meta/ProteinTranslation.resi new file mode 100644 index 0000000..a5cff46 --- /dev/null +++ b/exercises/practice/protein-translation/.meta/ProteinTranslation.resi @@ -0,0 +1,11 @@ +type codons = + | Methionine + | Phenylalanine + | Leucine + | Serine + | Tyrosine + | Cysteine + | Tryptophan + | STOP + +let proteins: string => option> diff --git a/exercises/practice/protein-translation/.meta/config.json b/exercises/practice/protein-translation/.meta/config.json new file mode 100644 index 0000000..54e1f9b --- /dev/null +++ b/exercises/practice/protein-translation/.meta/config.json @@ -0,0 +1,20 @@ +{ + "authors": [ + "therealowenrees" + ], + "files": { + "solution": [ + "src/ProteinTranslation.res", + "src/ProteinTranslation.resi" + ], + "test": [ + "tests/ProteinTranslation_test.res" + ], + "example": [ + ".meta/ProteinTranslation.res", + ".meta/ProteinTranslation.resi" + ] + }, + "blurb": "Translate RNA sequences into proteins.", + "source": "Tyler Long" +} diff --git a/exercises/practice/protein-translation/.meta/tests.toml b/exercises/practice/protein-translation/.meta/tests.toml new file mode 100644 index 0000000..de680e3 --- /dev/null +++ b/exercises/practice/protein-translation/.meta/tests.toml @@ -0,0 +1,105 @@ +# This is an auto-generated file. +# +# Regenerating this file via `configlet sync` will: +# - Recreate every `description` key/value pair +# - Recreate every `reimplements` key/value pair, where they exist in problem-specifications +# - Remove any `include = true` key/value pair (an omitted `include` key implies inclusion) +# - Preserve any other key/value pair +# +# As user-added comments (using the # character) will be removed when this file +# is regenerated, comments can be added via a `comment` key. + +[2c44f7bf-ba20-43f7-a3bf-f2219c0c3f98] +description = "Empty RNA sequence results in no proteins" + +[96d3d44f-34a2-4db4-84cd-fff523e069be] +description = "Methionine RNA sequence" + +[1b4c56d8-d69f-44eb-be0e-7b17546143d9] +description = "Phenylalanine RNA sequence 1" + +[81b53646-bd57-4732-b2cb-6b1880e36d11] +description = "Phenylalanine RNA sequence 2" + +[42f69d4f-19d2-4d2c-a8b0-f0ae9ee1b6b4] +description = "Leucine RNA sequence 1" + +[ac5edadd-08ed-40a3-b2b9-d82bb50424c4] +description = "Leucine RNA sequence 2" + +[8bc36e22-f984-44c3-9f6b-ee5d4e73f120] +description = "Serine RNA sequence 1" + +[5c3fa5da-4268-44e5-9f4b-f016ccf90131] +description = "Serine RNA sequence 2" + +[00579891-b594-42b4-96dc-7ff8bf519606] +description = "Serine RNA sequence 3" + +[08c61c3b-fa34-4950-8c4a-133945570ef6] +description = "Serine RNA sequence 4" + +[54e1e7d8-63c0-456d-91d2-062c72f8eef5] +description = "Tyrosine RNA sequence 1" + +[47bcfba2-9d72-46ad-bbce-22f7666b7eb1] +description = "Tyrosine RNA sequence 2" + +[3a691829-fe72-43a7-8c8e-1bd083163f72] +description = "Cysteine RNA sequence 1" + +[1b6f8a26-ca2f-43b8-8262-3ee446021767] +description = "Cysteine RNA sequence 2" + +[1e91c1eb-02c0-48a0-9e35-168ad0cb5f39] +description = "Tryptophan RNA sequence" + +[e547af0b-aeab-49c7-9f13-801773a73557] +description = "STOP codon RNA sequence 1" + +[67640947-ff02-4f23-a2ef-816f8a2ba72e] +description = "STOP codon RNA sequence 2" + +[9c2ad527-ebc9-4ace-808b-2b6447cb54cb] +description = "STOP codon RNA sequence 3" + +[f4d9d8ee-00a8-47bf-a1e3-1641d4428e54] +description = "Sequence of two protein codons translates into proteins" + +[dd22eef3-b4f1-4ad6-bb0b-27093c090a9d] +description = "Sequence of two different protein codons translates into proteins" + +[d0f295df-fb70-425c-946c-ec2ec185388e] +description = "Translate RNA strand into correct protein list" + +[e30e8505-97ec-4e5f-a73e-5726a1faa1f4] +description = "Translation stops if STOP codon at beginning of sequence" + +[5358a20b-6f4c-4893-bce4-f929001710f3] +description = "Translation stops if STOP codon at end of two-codon sequence" + +[ba16703a-1a55-482f-bb07-b21eef5093a3] +description = "Translation stops if STOP codon at end of three-codon sequence" + +[4089bb5a-d5b4-4e71-b79e-b8d1f14a2911] +description = "Translation stops if STOP codon in middle of three-codon sequence" + +[2c2a2a60-401f-4a80-b977-e0715b23b93d] +description = "Translation stops if STOP codon in middle of six-codon sequence" + +[f6f92714-769f-4187-9524-e353e8a41a80] +description = "Sequence of two non-STOP codons does not translate to a STOP codon" + +[1e75ea2a-f907-4994-ae5c-118632a1cb0f] +description = "Non-existing codon can't translate" +include = false + +[9eac93f3-627a-4c90-8653-6d0a0595bc6f] +description = "Unknown amino acids, not part of a codon, can't translate" +reimplements = "1e75ea2a-f907-4994-ae5c-118632a1cb0f" + +[9d73899f-e68e-4291-b1e2-7bf87c00f024] +description = "Incomplete RNA sequence can't translate" + +[43945cf7-9968-402d-ab9f-b8a28750b050] +description = "Incomplete RNA sequence can translate if valid until a STOP codon" diff --git a/exercises/practice/protein-translation/LICENSE b/exercises/practice/protein-translation/LICENSE new file mode 100644 index 0000000..8ee0f26 --- /dev/null +++ b/exercises/practice/protein-translation/LICENSE @@ -0,0 +1,21 @@ +MIT License + +Copyright (c) 2026 Exercism + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/exercises/practice/protein-translation/package-lock.json b/exercises/practice/protein-translation/package-lock.json new file mode 100644 index 0000000..c9362ce --- /dev/null +++ b/exercises/practice/protein-translation/package-lock.json @@ -0,0 +1,1566 @@ +{ + "name": "@exercism/rescript", + "version": "1.0.0", + "lockfileVersion": 3, + "requires": true, + "packages": { + "": { + "name": "@exercism/rescript", + "license": "MIT", + "dependencies": { + "rescript": "^12.1.0" + }, + "devDependencies": { + "rescript-test": "^8.0.0", + "toml": "^3.0.0" + } + }, + "node_modules/@asamuzakjp/css-color": { + "version": "3.2.0", + "resolved": "https://registry.npmjs.org/@asamuzakjp/css-color/-/css-color-3.2.0.tgz", + 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"res:build": "rescript", + "res:start": "rescript build -w", + "res:format-check": "rescript format --check", + "res:format-fix": "rescript format", + "test": "rescript && retest **/tests/*.js", + "ci": "npm test" + } +} diff --git a/exercises/practice/protein-translation/rescript.json b/exercises/practice/protein-translation/rescript.json new file mode 100644 index 0000000..3db8c50 --- /dev/null +++ b/exercises/practice/protein-translation/rescript.json @@ -0,0 +1,15 @@ +{ + "name": "@exercism/rescript", + "sources": [ + { "dir": "src", "subdirs": true, "type": "dev" }, + { "dir": "tests", "subdirs": true, "type": "dev" } + ], + "package-specs": [ + { + "module": "esmodule", + "in-source": true + } + ], + "suffix": ".res.js", + "dev-dependencies": ["rescript-test"] +} diff --git a/exercises/practice/protein-translation/src/ProteinTranslation.res b/exercises/practice/protein-translation/src/ProteinTranslation.res new file mode 100644 index 0000000..d8ebf77 --- /dev/null +++ b/exercises/practice/protein-translation/src/ProteinTranslation.res @@ -0,0 +1 @@ +let proteins = _ => panic("'proteins' not implemented") diff --git a/exercises/practice/protein-translation/src/ProteinTranslation.resi b/exercises/practice/protein-translation/src/ProteinTranslation.resi new file mode 100644 index 0000000..a5cff46 --- /dev/null +++ b/exercises/practice/protein-translation/src/ProteinTranslation.resi @@ -0,0 +1,11 @@ +type codons = + | Methionine + | Phenylalanine + | Leucine + | Serine + | Tyrosine + | Cysteine + | Tryptophan + | STOP + +let proteins: string => option> diff --git a/exercises/practice/protein-translation/tests/ProteinTranslation_test.res b/exercises/practice/protein-translation/tests/ProteinTranslation_test.res new file mode 100644 index 0000000..bea7cf1 --- /dev/null +++ b/exercises/practice/protein-translation/tests/ProteinTranslation_test.res @@ -0,0 +1,164 @@ +open Test +open ProteinTranslation + +let equal = (~message=?, a, b) => assertion(~message?, ~operator="equal", (a, b) => a == b, a, b) + +test("Empty RNA sequence results in no proteins", () => { + equal(~message="Empty RNA sequence results in no proteins", proteins(""), Some([])) +}) + +test("Methionine RNA sequence", () => { + equal(~message="Methionine RNA sequence", proteins("AUG"), Some([Methionine])) +}) + +test("Phenylalanine RNA sequence 1", () => { + equal(~message="Phenylalanine RNA sequence 1", proteins("UUU"), Some([Phenylalanine])) +}) + +test("Phenylalanine RNA sequence 2", () => { + equal(~message="Phenylalanine RNA sequence 2", proteins("UUC"), Some([Phenylalanine])) +}) + +test("Leucine RNA sequence 1", () => { + equal(~message="Leucine RNA sequence 1", proteins("UUA"), Some([Leucine])) +}) + +test("Leucine RNA sequence 2", () => { + equal(~message="Leucine RNA sequence 2", proteins("UUG"), Some([Leucine])) +}) + +test("Serine RNA sequence 1", () => { + equal(~message="Serine RNA sequence 1", proteins("UCU"), Some([Serine])) +}) + +test("Serine RNA sequence 2", () => { + equal(~message="Serine RNA sequence 2", proteins("UCC"), Some([Serine])) +}) + +test("Serine RNA sequence 3", () => { + equal(~message="Serine RNA sequence 3", proteins("UCA"), Some([Serine])) +}) + +test("Serine RNA sequence 4", () => { + equal(~message="Serine RNA sequence 4", proteins("UCG"), Some([Serine])) +}) + +test("Tyrosine RNA sequence 1", () => { + equal(~message="Tyrosine RNA sequence 1", proteins("UAU"), Some([Tyrosine])) +}) + +test("Tyrosine RNA sequence 2", () => { + equal(~message="Tyrosine RNA sequence 2", proteins("UAC"), Some([Tyrosine])) +}) + +test("Cysteine RNA sequence 1", () => { + equal(~message="Cysteine RNA sequence 1", proteins("UGU"), Some([Cysteine])) +}) + +test("Cysteine RNA sequence 2", () => { + equal(~message="Cysteine RNA sequence 2", proteins("UGC"), Some([Cysteine])) +}) + +test("Tryptophan RNA sequence", () => { + equal(~message="Tryptophan RNA sequence", proteins("UGG"), Some([Tryptophan])) +}) + +test("STOP codon RNA sequence 1", () => { + equal(~message="STOP codon RNA sequence 1", proteins("UAA"), Some([])) +}) + +test("STOP codon RNA sequence 2", () => { + equal(~message="STOP codon RNA sequence 2", proteins("UAG"), Some([])) +}) + +test("STOP codon RNA sequence 3", () => { + equal(~message="STOP codon RNA sequence 3", proteins("UGA"), Some([])) +}) + +test("Sequence of two protein codons translates into proteins", () => { + equal( + ~message="Sequence of two protein codons translates into proteins", + proteins("UUUUUU"), + Some([Phenylalanine, Phenylalanine]), + ) +}) + +test("Sequence of two different protein codons translates into proteins", () => { + equal( + ~message="Sequence of two different protein codons translates into proteins", + proteins("UUAUUG"), + Some([Leucine, Leucine]), + ) +}) + +test("Translate RNA strand into correct protein list", () => { + equal( + ~message="Translate RNA strand into correct protein list", + proteins("AUGUUUUGG"), + Some([Methionine, Phenylalanine, Tryptophan]), + ) +}) + +test("Translation stops if STOP codon at beginning of sequence", () => { + equal( + ~message="Translation stops if STOP codon at beginning of sequence", + proteins("UAGUGG"), + Some([]), + ) +}) + +test("Translation stops if STOP codon at end of two-codon sequence", () => { + equal( + ~message="Translation stops if STOP codon at end of two-codon sequence", + proteins("UGGUAG"), + Some([Tryptophan]), + ) +}) + +test("Translation stops if STOP codon at end of three-codon sequence", () => { + equal( + ~message="Translation stops if STOP codon at end of three-codon sequence", + proteins("AUGUUUUAA"), + Some([Methionine, Phenylalanine]), + ) +}) + +test("Translation stops if STOP codon in middle of three-codon sequence", () => { + equal( + ~message="Translation stops if STOP codon in middle of three-codon sequence", + proteins("UGGUAGUGG"), + Some([Tryptophan]), + ) +}) + +test("Translation stops if STOP codon in middle of six-codon sequence", () => { + equal( + ~message="Translation stops if STOP codon in middle of six-codon sequence", + proteins("UGGUGUUAUUAAUGGUUU"), + Some([Tryptophan, Cysteine, Tyrosine]), + ) +}) + +test("Sequence of two non-STOP codons does not translate to a STOP codon", () => { + equal( + ~message="Sequence of two non-STOP codons does not translate to a STOP codon", + proteins("AUGAUG"), + Some([Methionine, Methionine]), + ) +}) + +test("Unknown amino acids, not part of a codon, can't translate", () => { + equal(~message="Unknown amino acids, not part of a codon, can't translate", proteins("XYZ"), None) +}) + +test("Incomplete RNA sequence can't translate", () => { + equal(~message="Incomplete RNA sequence can't translate", proteins("AUGU"), None) +}) + +test("Incomplete RNA sequence can translate if valid until a STOP codon", () => { + equal( + ~message="Incomplete RNA sequence can translate if valid until a STOP codon", + proteins("UUCUUCUAAUGGU"), + Some([Phenylalanine, Phenylalanine]), + ) +}) diff --git a/test_templates/ProteinTranslation_template.res b/test_templates/ProteinTranslation_template.res new file mode 100644 index 0000000..17db0f5 --- /dev/null +++ b/test_templates/ProteinTranslation_template.res @@ -0,0 +1,29 @@ +open Node + +let slug = fileURLToPath(%raw(`import.meta.url`))->basename->Utils.filenameToSlug + +let template = (case: GetCases.case) => { + let input = Utils.getTestCaseInput(case, "strand") + + let expectedStr = switch case.expected->JSON.Decode.array { + | Some(arr) => { + let variants = + arr + ->Array.map(val => { + val->JSON.Decode.string->Option.getOr("")->String.capitalize + }) + ->Array.join(", ") + + `Some([${variants}])` + } + | None => "None" + } + + AssertionGenerators.equal( + ~message=case.description, + ~actual=`${case.property}(${input})`, + ~expected=expectedStr, + ) +} + +TestGenerator.generateTests(slug, template, [Equal])