From f540cfd18c825abf440adef89873f1a7649525e5 Mon Sep 17 00:00:00 2001 From: Sebastian Tramp Date: Wed, 15 Oct 2025 16:54:19 +0200 Subject: [PATCH] upgrade dependencies, template + adaptions --- .copier-answers.yml | 2 +- .github/workflows/check.yml | 10 +- .github/workflows/publish.yml | 6 +- .gitlab-ci.yml | 13 +- .python-version | 2 +- CHANGELOG.md | 11 + README-public.md | 2 +- Taskfile.yaml | 14 +- poetry.lock | 2138 +++++++++++++++++++------------ pyproject.toml | 27 +- tests/test_validate_entities.py | 12 +- tests/test_validate_graph.py | 42 +- tests/utils.py | 75 -- 13 files changed, 1412 insertions(+), 942 deletions(-) delete mode 100644 tests/utils.py diff --git a/.copier-answers.yml b/.copier-answers.yml index 3805217..704bf69 100644 --- a/.copier-answers.yml +++ b/.copier-answers.yml @@ -1,5 +1,5 @@ # Changes here will be overwritten by Copier -_commit: v7.0.0 +_commit: v7.3.0-24-g169e035 _src_path: gh:eccenca/cmem-plugin-template author_mail: cmempy-developer@eccenca.com author_name: eccenca GmbH diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml index 96879bf..68e675d 100644 --- a/.github/workflows/check.yml +++ b/.github/workflows/check.yml @@ -20,16 +20,16 @@ jobs: steps: - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 - name: Install Task uses: arduino/setup-task@v2 - name: Set up python id: setup-python - uses: actions/setup-python@v5 + uses: actions/setup-python@v6 with: - python-version: '3.11' + python-version: '3.13' - name: Install and configure poetry uses: snok/install-poetry@v1 @@ -57,6 +57,10 @@ jobs: run: | task check:pytest + - name: deptry + run: | + task check:deptry + - name: safety run: | task check:safety diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index 24a4756..a450b6d 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -17,16 +17,16 @@ jobs: steps: - name: Check out repository - uses: actions/checkout@v4 + uses: actions/checkout@v5 - name: Install Task uses: arduino/setup-task@v2 - name: Set up python id: setup-python - uses: actions/setup-python@v5 + uses: actions/setup-python@v6 with: - python-version: '3.11' + python-version: '3.13' - name: Install and configure poetry uses: snok/install-poetry@v1 diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 13f67e9..a73d652 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -1,6 +1,6 @@ --- default: - image: docker-registry.eccenca.com/eccenca-python:v3.11.4 + image: docker-registry.eccenca.com/eccenca-python:v3.13.8 # all jobs can be interrupted in case a new commit is pushed interruptible: true before_script: @@ -53,10 +53,12 @@ pytest: junit: - dist/junit-pytest.xml paths: - - dist/badge-coverage.svg - - dist/badge-tests.svg - - dist/coverage - - dist/coverage.xml + - dist/* + +deptry: + stage: test + script: + - task check:deptry safety: stage: test @@ -69,6 +71,7 @@ build: - mypy - pytest - safety + - deptry script: - task build artifacts: diff --git a/.python-version b/.python-version index 2c07333..24ee5b1 100644 --- a/.python-version +++ b/.python-version @@ -1 +1 @@ -3.11 +3.13 diff --git a/CHANGELOG.md b/CHANGELOG.md index 60c624f..0e47b06 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,15 +1,26 @@ + # Change Log All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](http://keepachangelog.com/) and this project adheres to [Semantic Versioning](https://semver.org/) +## [1.2.0] 2025-10-15 + +## Changed + +- Update of dependencies and template +- validation of python 3.13 compatibility +- python 3.13 required + + ## [1.1.2] 2024-12-24 ### Changed - update `Validate Entities` plugin documentation + ## [1.1.1] 2024-11-28 ### Changed diff --git a/README-public.md b/README-public.md index cbc97c0..ac9a102 100644 --- a/README-public.md +++ b/README-public.md @@ -4,7 +4,7 @@ Validate graph and data structures. [![eccenca Corporate Memory][cmem-shield]][cmem-link] -This is a plugin for [eccenca](https://eccenca.com) [Corporate Memory](https://documentation.eccenca.com). You can install it with the [cmemc](https://eccenca.com/go/cmemc) command line clients like this: +This is a plugin for [eccenca](https://eccenca.com) [Corporate Memory](https://documentation.eccenca.com). You can install it with the [cmemc](https://eccenca.com/go/cmemc) command line client like this: ``` cmemc admin workspace python install cmem-plugin-validation diff --git a/Taskfile.yaml b/Taskfile.yaml index 3f3835b..8071937 100644 --- a/Taskfile.yaml +++ b/Taskfile.yaml @@ -20,9 +20,11 @@ includes: custom: taskfile: ./TaskfileCustom.yaml optional: true + flatten: true plugin: taskfile: .tasks-plugin.yml optional: true + flatten: true tasks: @@ -68,7 +70,6 @@ tasks: | head -1 | cut -d " " -f 2 | cut -d "." -f 1-2 poetry:install: - internal: true desc: Install dependencies managed by Poetry run: once deps: @@ -110,6 +111,7 @@ tasks: cmds: - task: check:ruff - task: check:mypy + - task: check:deptry - task: check:safety check:pytest: @@ -157,9 +159,13 @@ tasks: <<: *preparation cmds: # ignore 51358 safety - dev dependency only - # ignore 67599 pip - dev dependency only - # ignore 70612 jinja2 - dev dependency only - - poetry run safety check -i 51358 -i 67599 -i 70612 + - poetry run safety check -i 51358 + + check:deptry: + desc: Complain about unused or missing dependencies + <<: *preparation + cmds: + - poetry run deptry . check:ruff: desc: Complain about everything else diff --git a/poetry.lock b/poetry.lock index 5e1a95c..c1db5d0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,37 +1,44 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. + +[[package]] +name = "annotated-types" +version = "0.7.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +groups = ["main"] +files = [ + {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, + {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, +] [[package]] name = "attrs" -version = "24.2.0" +version = "25.4.0" description = "Classes Without Boilerplate" optional = false -python-versions = ">=3.7" +python-versions = ">=3.9" +groups = ["main"] files = [ - 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-pytest-cov = "^5.0.0" +deptry = "^0.23.1" +genbadge = {extras = ["coverage"], version = "^1.1.2"} +mypy = "^1.18.2" +pip = "^25.2" +pytest = "^8.4.2" +pytest-cov = "^7.0.0" pytest-dotenv = "^0.5.2" pytest-html = "^4.1.1" -pytest-memray = { version = "^1.7.0", markers = "platform_system != 'Windows'" } -ruff = "^0.6.1" +pytest-memray = { version = "^1.8.0", markers = "platform_system != 'Windows'" } +ruff = "^0.13.3" safety = "^1.10.3" types-requests = "^2.31.0.20240406" @@ -76,7 +79,6 @@ line-ending = "lf" # Use `\n` line endings for all files [tool.ruff.lint] select = ["ALL"] ignore = [ - "ANN101", # Missing type annotation for self in method "ANN204", # Missing return type annotation for special method `__init__` "COM812", # missing-trailing-comma "D107", # Missing docstring in __init__ @@ -94,4 +96,3 @@ ignore = [ "S101", # use of assert detected "TRY003", # Avoid specifying long messages outside the exception class ] - diff --git a/tests/test_validate_entities.py b/tests/test_validate_entities.py index 6a72c4b..d6d858f 100644 --- a/tests/test_validate_entities.py +++ b/tests/test_validate_entities.py @@ -3,16 +3,17 @@ import json from collections.abc import Generator from dataclasses import dataclass +from os import environ from pathlib import Path import pytest from cmem.cmempy.workspace.projects.datasets.dataset import make_new_dataset from cmem.cmempy.workspace.projects.project import delete_project, make_new_project from cmem.cmempy.workspace.projects.resources.resource import create_resource, get_resource_response +from cmem_plugin_base.testing import TestExecutionContext from cmem_plugin_validation.validate_entities.task import SOURCE, TARGET, ValidateEntity from tests.fixtures import FIXTURE_DIR -from tests.utils import TestExecutionContext, needs_cmem @dataclass @@ -68,13 +69,18 @@ def project() -> Generator[TestSetup, None, None]: delete_project(_.project_name) +needs_cmem = pytest.mark.skipif( + environ.get("CMEM_BASE_URI", "") == "", reason="Needs CMEM configuration" +) + + @needs_cmem def test_configuration(project: TestSetup) -> None: """Test configuration setup""" _ = project with pytest.raises( ValueError, - match="When using the source mode 'dataset', you need to select a Source JSON Dataset.", + match=r"When using the source mode 'dataset', you need to select a Source JSON Dataset.", ): ValidateEntity( source_mode=SOURCE.dataset, @@ -84,7 +90,7 @@ def test_configuration(project: TestSetup) -> None: ) with pytest.raises( ValueError, - match="When using the target mode 'dataset', you need to select a Target JSON dataset.", + match=r"When using the target mode 'dataset', you need to select a Target JSON dataset.", ): ValidateEntity( source_mode=SOURCE.entities, diff --git a/tests/test_validate_graph.py b/tests/test_validate_graph.py index a32cd1a..6dc38cd 100644 --- a/tests/test_validate_graph.py +++ b/tests/test_validate_graph.py @@ -9,10 +9,11 @@ import cmem.cmempy.dp.proxy.graph as graph_api import pytest from cmem_plugin_base.dataintegration.entity import Entities +from cmem_plugin_base.testing import TestExecutionContext +from requests import HTTPError, codes from cmem_plugin_validation.validate_graph.task import ValidateGraph from tests.fixtures import FIXTURE_DIR -from tests.utils import TestExecutionContext def _get_triple_count(graph: str) -> int: @@ -42,12 +43,19 @@ def test_setup() -> Generator[TestSetup, Any, None]: _ = TestSetup() graph_api.post_streamed(replace=True, file=_.persons_file, graph=_.persons_graph) graph_api.post_streamed(replace=True, file=_.shapes_file, graph=_.shapes_graph) - graph_api.delete(graph=_.result_graph) + try: + graph_api.delete(graph=_.result_graph) + except HTTPError as error: + if error.response.status_code != codes.not_found: + raise HTTPError from error yield _ # purge setup - graph_api.delete(graph=_.persons_graph) - graph_api.delete(graph=_.shapes_graph) - graph_api.delete(graph=_.result_graph) + for graph in [_.persons_graph, _.shapes_graph, _.result_graph]: + try: + graph_api.delete(graph=graph) + except HTTPError as error: + if error.response.status_code != codes.not_found: + raise HTTPError from error def test_fails(test_setup: TestSetup) -> None: @@ -84,9 +92,9 @@ def test_output_results(test_setup: TestSetup) -> None: assert isinstance(result, Entities) entities = list(result.entities) assert len(entities) == 1, "There should be a single violation entity" - assert entities[0].values[1] == [ - "http://example.org/persons/2" - ], "focus node of the only violation should be person 2" + assert entities[0].values[1] == ["http://example.org/persons/2"], ( + "focus node of the only violation should be person 2" + ) def test_safe_as_graph(test_setup: TestSetup) -> None: @@ -104,14 +112,14 @@ def test_safe_as_graph(test_setup: TestSetup) -> None: result_graph_triples = _get_triple_count(_.result_graph) assert result_graph_triples > 0, "result graph should be empty" task.execute(context=TestExecutionContext(), inputs=[]) - assert ( - _get_triple_count(_.result_graph) == result_graph_triples * 2 - ), "result graph should have two equal result sets" + assert _get_triple_count(_.result_graph) == result_graph_triples * 2, ( + "result graph should have two equal result sets" + ) task.clear_result_graph = True task.execute(context=TestExecutionContext(), inputs=[]) - assert ( - _get_triple_count(_.result_graph) == result_graph_triples - ), "result graph should have as single result sets again" + assert _get_triple_count(_.result_graph) == result_graph_triples, ( + "result graph should have as single result sets again" + ) def test_different_query(test_setup: TestSetup) -> None: @@ -135,6 +143,6 @@ def test_different_query(test_setup: TestSetup) -> None: } """ task.sparql_query = query - assert ( - task.execute(context=TestExecutionContext(), inputs=[]) is None - ), "Should no violations, since no person was validated" + assert task.execute(context=TestExecutionContext(), inputs=[]) is None, ( + "Should no violations, since no person was validated" + ) diff --git a/tests/utils.py b/tests/utils.py deleted file mode 100644 index 3903788..0000000 --- a/tests/utils.py +++ /dev/null @@ -1,75 +0,0 @@ -"""Testing utilities. - -Remove this and other example files after bootstrapping your project. -""" - -import os -from typing import ClassVar - -import pytest - -# check for cmem environment and skip if not present -from cmem.cmempy.api import get_token -from cmem.cmempy.config import get_oauth_default_credentials -from cmem_plugin_base.dataintegration.context import ( - ExecutionContext, - PluginContext, - ReportContext, - TaskContext, - UserContext, -) - -needs_cmem = pytest.mark.skipif( - os.environ.get("CMEM_BASE_URI", "") == "", reason="Needs CMEM configuration" -) - - -class TestUserContext(UserContext): - """dummy user context that can be used in tests""" - - __test__ = False - default_credential: ClassVar[dict] = {} - - def __init__(self): - # get access token from default service account - if not TestUserContext.default_credential: - TestUserContext.default_credential = get_oauth_default_credentials() - access_token = get_token(_oauth_credentials=TestUserContext.default_credential)[ - "access_token" - ] - self.token = lambda: access_token - - -class TestPluginContext(PluginContext): - """dummy plugin context that can be used in tests""" - - __test__ = False - - def __init__( - self, - project_id: str = "dummyProject", - ): - self.project_id = project_id - self.user = TestUserContext() - - -class TestTaskContext(TaskContext): - """dummy Task context that can be used in tests""" - - __test__ = False - - def __init__(self, project_id: str = "dummyProject", task_id: str = "dummyTask"): - self.project_id = lambda: project_id - self.task_id = lambda: task_id - - -class TestExecutionContext(ExecutionContext): - """dummy execution context that can be used in tests""" - - __test__ = False - - def __init__(self, project_id: str = "dummyProject", task_id: str = "dummyTask"): - self.report = ReportContext() - self.task = TestTaskContext(project_id=project_id, task_id=task_id) - self.user = TestUserContext() - self.workflow = None