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[Feature Request] Reorganize the directory structure #934

@njzjz

Description

@njzjz

Summary

Reorganize the directory structure.

Detailed Description

Currently, the structure is below:

abacus
amber
cp2k
deepmd
dftbplus
fhi_aims
gaussian
gromacs
lammps
lmdb
md
openmx
orca
plugins
psi4
pwmat
pymatgen
qe
rdkit
siesta
vasp
xyz

I suggest the following structure:

formats/abacus
formats/amber
formats/cp2k
formats/deepmd
formats/dftbplus
formats/fhi_aims
formats/gaussian
formats/gromacs
formats/lammps
formats/lmdb
formats/md
formats/openmx
formats/orca
plugins
formats/psi4
formats/pwmat
formats/pymatgen
formats/qe
formats/rdkit
formats/siesta
formats/vasp
formats/xyz

which will make the directory clearer.

Further Information, Files, and Links

cc @wanghan-iapcm

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