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Post-processing parameter: type --> cell_type
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59 files changed

+420
-142
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‎reproducibility/block_extraction/Alphatag_MAMDOTOF1L.json‎

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"IHC_v4b"
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],
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"segmentation_channel": "IHC_v4b",
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"type": "ihc",
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"cell_type": "ihc",
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"n_blocks": 6,
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"component_list": [
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‎reproducibility/block_extraction/ChReef_GEK49L.json‎

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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"cell_type": "sgn",
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"n_blocks": 8,
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"halo_size": [
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‎reproducibility/block_extraction/ChReef_GEK49L_torn_components.json‎

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],
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"type": "sgn",
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"cell_type": "sgn",
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"halo_size": [
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‎reproducibility/block_extraction/ChReef_GEK49R.json‎

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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"cell_type": "sgn",
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"n_blocks": 8,
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"halo_size": [
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‎reproducibility/block_extraction/ChReef_GEK49R_torn_components.json‎

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"component_list": [
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],
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"type": "sgn",
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"cell_type": "sgn",
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"halo_size": [
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‎reproducibility/block_extraction/ChReef_MLR143L.json‎

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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"cell_type": "sgn",
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"n_blocks": 6,
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"halo_size": [
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‎reproducibility/block_extraction/ChReef_MLR143R.json‎

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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"cell_type": "sgn",
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"n_blocks": 6,
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"halo_size": [
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‎reproducibility/block_extraction/ChReef_MLR144L.json‎

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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"cell_type": "sgn",
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"n_blocks": 6,
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"halo_size": [
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‎reproducibility/block_extraction/ChReef_MLR144R.json‎

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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"cell_type": "sgn",
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"n_blocks": 6,
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"crop_centers": [
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[

‎reproducibility/block_extraction/ChReef_MLR145L.json‎

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"SGN_v2"
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],
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"segmentation_channel": "SGN_v2",
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"type": "sgn",
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"cell_type": "sgn",
1111
"n_blocks": 6,
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"halo_size": [
1313
256,

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