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lines changed Original file line number Diff line number Diff line change @@ -37,7 +37,7 @@ def map_and_filter_detections(
3737 points = detections [["z" , "y" , "x" ]].values .astype ("int" )
3838
3939 # Set the block shape (this could also be exposed as a parameter; it should not matter much though).
40- block_shape = (64 , 256 , 256 )
40+ block_shape = (128 , 128 , 128 )
4141
4242 # Determine the halo. We set it to 2 pixels + the max-distance in pixels, to ensure all distances
4343 # that are smaller than the max distance are measured.
@@ -83,10 +83,6 @@ def run_prediction(
8383 block_shape: The block-shape for running the prediction.
8484 halo: The halo (= block overlap) to use for prediction.
8585 """
86- if block_shape is None :
87- block_shape = (64 , 256 , 256 )
88- if halo is None :
89- halo = (16 , 64 , 64 )
9086
9187 # Skip existing prediction, which is saved in output_folder/predictions.zarr
9288 skip_prediction = False
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