From 08c00b6aab15b3908f3dd44ccf39f04af345f30d Mon Sep 17 00:00:00 2001 From: Claude Date: Sat, 10 Oct 2026 07:07:59 +0000 Subject: [PATCH] fix(deps): patch vulnerable dependencies and keep JSON Schema tools working on MCP SDK 1.31+ Bump @modelcontextprotocol/sdk to ^1.32.1 (GHSA-6qxp-vccf-f47h) and fastify to ^5.12.5 (several validation/auth bypass advisories), refresh the lockfile for transitive fixes (proxy-addr, hono, path-to-regexp, qs, fast-uri, ip-address, ...), and move vitest/@vitest/coverage-v8 to v5 to clear the critical tinypool advisories. SDK 1.31 throws when server.tool() receives a plain JSON Schema object, which broke every tool defined with a JSON Schema inputSchema (the form the README documents). Register those via registerTool with a passthrough Zod object so they load and receive their arguments. Co-Authored-By: Claude Opus 5.5 (1M context) Claude-Session: https://claude.ai/code/session_01Rw9KfvgjjyMscEQdRXbQaS --- package-lock.json | 1607 +++++++------------------ package.json | 8 +- src/core/AGENTS.md | 1 + src/core/DynamicToolManager.ts | 37 +- tests/createMcpServer.test.ts | 3 + tests/e2e/jsonSchemaTools.e2e.test.ts | 68 ++ tests/helpers/fakes.ts | 13 + 7 files changed, 593 insertions(+), 1144 deletions(-) create mode 100644 tests/e2e/jsonSchemaTools.e2e.test.ts diff --git a/package-lock.json b/package-lock.json index 6fdc2cc..7c905c5 100644 --- a/package-lock.json +++ b/package-lock.json @@ -10,42 +10,28 @@ "license": "Apache-2.0", "dependencies": { "@fastify/cors": "^10.0.1", - "@modelcontextprotocol/sdk": "^1.27.1", - "fastify": "^5.0.0", + "@modelcontextprotocol/sdk": "^1.32.1", + "fastify": "^5.12.5", "zod": "^3.22.4" }, "devDependencies": { "@types/connect": "^3.4.38", "@types/node": "^25.0.0", - "@vitest/coverage-v8": "^3.2.4", + "@vitest/coverage-v8": "^5.0.3", "tsx": "^4.19.0", "typescript": "^5.9.2", "vite": "^7.2.4", "vite-plugin-dts": "^4.5.4", - 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"dev": true, - "license": "ISC" - }, "node_modules/zod": { "version": "3.25.76", "resolved": "https://registry.npmjs.org/zod/-/zod-3.25.76.tgz", diff --git a/package.json b/package.json index feec713..a20cbd4 100644 --- a/package.json +++ b/package.json @@ -24,19 +24,19 @@ }, "dependencies": { "@fastify/cors": "^10.0.1", - "@modelcontextprotocol/sdk": "^1.27.1", - "fastify": "^5.0.0", + "@modelcontextprotocol/sdk": "^1.32.1", + "fastify": "^5.12.5", "zod": "^3.22.4" }, "devDependencies": { "@types/connect": "^3.4.38", "@types/node": "^25.0.0", - "@vitest/coverage-v8": "^3.2.4", + "@vitest/coverage-v8": "^5.0.3", "tsx": "^4.19.0", "typescript": "^5.9.2", "vite": "^7.2.4", "vite-plugin-dts": "^4.5.4", - "vitest": "^3.2.4" + "vitest": "^5.0.3" }, "engines": { "node": ">=25.3.0" diff --git a/src/core/AGENTS.md b/src/core/AGENTS.md index 41556d3..bbb3bf3 100644 --- a/src/core/AGENTS.md +++ b/src/core/AGENTS.md @@ -18,6 +18,7 @@ Central orchestration layer. Manages toolset lifecycle, tool registration, and s 4. **Namespacing applied BEFORE collision check** — `mapAndValidate()` generates safe names first, then checks for conflicts. 5. **Toolset added to activeToolsets AFTER registration** — All tools must register successfully before toolset is marked active. Partial failures leave the toolset inactive but orphaned tools remain registered (MCP limitation). 6. **`enableToolsets()` batches notifications** — Calls `enableToolset(name, skipNotification=true)` per toolset, sends one `tools/list_changed` notification at the end. +7. **JSON Schema `inputSchema` uses `registerTool` with a passthrough object** — SDK >= 1.31 rejects plain JSON Schema in `server.tool()`. Zod raw shapes still go through `server.tool()`. Clients see an open object schema for JSON Schema tools, not the declared one. ## Enable Toolset Flow diff --git a/src/core/DynamicToolManager.ts b/src/core/DynamicToolManager.ts index 35c4d72..486ea1e 100644 --- a/src/core/DynamicToolManager.ts +++ b/src/core/DynamicToolManager.ts @@ -1,4 +1,5 @@ import type { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js"; +import { z } from "zod"; import type { ExposurePolicy, McpToolDefinition, @@ -249,7 +250,22 @@ export class DynamicToolManager { const hasAnnotations = tool.annotations && Object.keys(tool.annotations).length > 0; - if (hasAnnotations && tool.annotations) { + if (!isZodRawShape(tool.inputSchema)) { + // SDK >= 1.31 rejects plain JSON Schema objects in server.tool(); older + // versions silently treated them as annotations and dropped the args. + // Register with a passthrough object so arguments reach the handler. + this.server.registerTool( + tool.name, + { + description: tool.description, + inputSchema: z.object({}).passthrough(), + ...(hasAnnotations ? { annotations: tool.annotations } : {}), + }, + async (args: Record) => { + return await tool.handler(args); + } + ); + } else if (hasAnnotations && tool.annotations) { this.server.tool( tool.name, tool.description, @@ -392,3 +408,22 @@ export class DynamicToolManager { return this.enableToolsets(all); } } + +/** + * Mirrors the SDK's raw-shape check: an empty object, or an object with at + * least one Zod schema value (e.g. `{ symbol: z.string() }`). + */ +function isZodRawShape(schema: unknown): boolean { + if (typeof schema !== "object" || schema === null) return false; + const values = Object.values(schema); + return values.length === 0 || values.some(isZodTypeLike); +} + +function isZodTypeLike(value: unknown): boolean { + return ( + typeof value === "object" && + value !== null && + typeof (value as { parse?: unknown }).parse === "function" && + typeof (value as { safeParse?: unknown }).safeParse === "function" + ); +} diff --git a/tests/createMcpServer.test.ts b/tests/createMcpServer.test.ts index c606af0..0e8957b 100644 --- a/tests/createMcpServer.test.ts +++ b/tests/createMcpServer.test.ts @@ -53,6 +53,9 @@ function makeFakeServer() { tool: (name: string) => { calls.push(name); }, + registerTool: (name: string) => { + calls.push(name); + }, } as any; return { server, calls }; } diff --git a/tests/e2e/jsonSchemaTools.e2e.test.ts b/tests/e2e/jsonSchemaTools.e2e.test.ts new file mode 100644 index 0000000..f5c6fd1 --- /dev/null +++ b/tests/e2e/jsonSchemaTools.e2e.test.ts @@ -0,0 +1,68 @@ +import { describe, it, expect, beforeAll, afterAll } from "vitest"; +import { createMcpServer } from "../../src/index.js"; +import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js"; +import { Client } from "@modelcontextprotocol/sdk/client/index.js"; +import { StreamableHTTPClientTransport } from "@modelcontextprotocol/sdk/client/streamableHttp.js"; +import { getAvailablePort, extractTextContent } from "./helpers.js"; + +describe("JSON Schema tool definitions E2E", () => { + let server: Awaited>; + let port: number; + + beforeAll(async () => { + port = await getAvailablePort(); + server = await createMcpServer({ + createServer: () => new McpServer({ name: "test-json-schema", version: "1.0.0" }), + catalog: { + quotes: { + name: "Quotes", + description: "Quote tools", + tools: [ + { + name: "price", + description: "Echoes the symbol", + inputSchema: { + type: "object", + properties: { symbol: { type: "string" } }, + required: ["symbol"], + }, + annotations: { readOnlyHint: true }, + handler: async ({ symbol }: { symbol: string }) => ({ + content: [{ type: "text", text: `${symbol}: 123.45` }], + }), + }, + ], + }, + }, + startup: { mode: "STATIC", toolsets: ["quotes"] }, + http: { port }, + }); + await server.start(); + }); + + afterAll(async () => { + await server.close(); + }); + + it("registers the tool and passes arguments to the handler", async () => { + const transport = new StreamableHTTPClientTransport( + new URL(`http://localhost:${port}/mcp`), + { requestInit: { headers: { "mcp-client-id": "json-schema-client" } } } + ); + const client = new Client({ name: "test", version: "1.0.0" }); + await client.connect(transport); + + const tools = await client.listTools(); + const price = tools.tools.find((t) => t.name === "quotes.price"); + expect(price).toBeDefined(); + expect(price?.annotations).toEqual({ readOnlyHint: true }); + + const result = await client.callTool({ + name: "quotes.price", + arguments: { symbol: "AAPL" }, + }); + expect(extractTextContent(result)).toBe("AAPL: 123.45"); + + await client.close(); + }); +}); diff --git a/tests/helpers/fakes.ts b/tests/helpers/fakes.ts index e4b6fb6..ebee3c5 100644 --- a/tests/helpers/fakes.ts +++ b/tests/helpers/fakes.ts @@ -28,6 +28,19 @@ export function createFakeMcpServer(options: { withNotifier?: boolean } = {}) { const handler = isLegacy ? annotationsOrHandler : maybeHandler; tools.push({ name, description, schema, annotations, handler }); }, + registerTool( + name: string, + config: { description: string; inputSchema?: any; annotations?: any }, + handler: (args: any) => Promise | any + ) { + tools.push({ + name, + description: config.description, + schema: config.inputSchema, + annotations: config.annotations, + handler, + }); + }, async connect(_transport: unknown): Promise {}, }; if (options.withNotifier) {