use python.edn

Author: BEHRING Carsten

deps.edn

@@ -82,171 +82,5 @@
                         :artifact "target/libpython-clj.jar"}}
 
            }
-           
- :python-version "3.13.7"
- :python-deps [
-               "openai==1.58.1"
-               ]
 
-:renv-deps {:R
-            {:Version "4.4.1",
-             :Repositories [{:Name "CRAN", :URL "https://cloud.r-project.org"}]},
-            :Packages
-            {:tidyselect
-             {:Package "tidyselect",
-              :Version "1.2.1",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements
-              ["R" "cli" "glue" "lifecycle" "rlang" "vctrs" "withr"],
-              :Hash "829f27b9c4919c16b593794a6344d6c0"},
-             :withr
-             {:Package "withr",
-              :Version "3.0.1",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "grDevices" "graphics"],
-              :Hash "07909200e8bbe90426fbfeb73e1e27aa"},
-             :utf8
-             {:Package "utf8",
-              :Version "1.2.4",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R"],
-              :Hash "62b65c52671e6665f803ff02954446e9"},
-             :rlang
-             {:Package "rlang",
-              :Version "1.1.4",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "utils"],
-              :Hash "3eec01f8b1dee337674b2e34ab1f9bc1"},
-             :glue
-             {:Package "glue",
-              :Version "1.7.0",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "methods"],
-              :Hash "e0b3a53876554bd45879e596cdb10a52"},
-             :vctrs
-             {:Package "vctrs",
-              :Version "0.6.5",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "cli" "glue" "lifecycle" "rlang"],
-              :Hash "c03fa420630029418f7e6da3667aac4a"},
-             :tibble
-             {:Package "tibble",
-              :Version "3.2.1",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements
-              ["R"
-               "fansi"
-               "lifecycle"
-               "magrittr"
-               "methods"
-               "pillar"
-               "pkgconfig"
-               "rlang"
-               "utils"
-               "vctrs"],
-              :Hash "a84e2cc86d07289b3b6f5069df7a004c"},
-             :magrittr
-             {:Package "magrittr",
-              :Version "2.0.3",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R"],
-              :Hash "7ce2733a9826b3aeb1775d56fd305472"},
-             :lifecycle
-             {:Package "lifecycle",
-              :Version "1.0.4",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "cli" "glue" "rlang"],
-              :Hash "b8552d117e1b808b09a832f589b79035"},
-             :dplyr
-             {:Package "dplyr",
-              :Version "1.1.4",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements
-              ["R"
-               "R6"
-               "cli"
-               "generics"
-               "glue"
-               "lifecycle"
-               "magrittr"
-               "methods"
-               "pillar"
-               "rlang"
-               "tibble"
-               "tidyselect"
-               "utils"
-               "vctrs"],
-              :Hash "fedd9d00c2944ff00a0e2696ccf048ec"},
-             :pkgconfig
-             {:Package "pkgconfig",
-              :Version "2.0.3",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["utils"],
-              :Hash "01f28d4278f15c76cddbea05899c5d6f"},
-             :fansi
-             {:Package "fansi",
-              :Version "1.0.6",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "grDevices" "utils"],
-              :Hash "962174cf2aeb5b9eea581522286a911f"},
-             :renv
-             {:Package "renv",
-              :Version "1.0.7",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["utils"],
-              :Hash "397b7b2a265bc5a7a06852524dabae20"},
-             :pillar
-             {:Package "pillar",
-              :Version "1.9.0",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements
-              ["cli" "fansi" "glue" "lifecycle" "rlang" "utf8" "utils" "vctrs"],
-              :Hash "15da5a8412f317beeee6175fbc76f4bb"},
-             :generics
-             {:Package "generics",
-              :Version "0.1.3",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "methods"],
-              :Hash "15e9634c0fcd294799e9b2e929ed1b86"},
-             :cli
-             {:Package "cli",
-              :Version "3.6.3",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R" "utils"],
-              :Hash "b21916dd77a27642b447374a5d30ecf3"},
-             :R6
-             {:Package "R6",
-              :Version "2.5.1",
-              :Source "Repository",
-              :Repository "CRAN",
-              :Requirements ["R"],
-              :Hash "470851b6d5d0ac559e9d01bb352b4021"}
-:Rserve
-{:Package "Rserve",
- :Version "1.8-13",
- :Source "Repository",
- :Repository "CRAN",
- :Requirements ["R"],
- :Hash "589ebd25cffe93ab5ab61e66936d2678"}             
-             }}
-           
-           
-           
-           
-           }
+ }

python.edn

@@ -0,0 +1,8 @@
+{
+ :python-version "3.10.16"
+ :python-deps ["openai==1.58.1"
+               "langextract"]
+ :python-executable ".venv/Scripts/python"
+ :pre-initialize-fn libpython-clj2.python.uv/sync-python-setup!
+
+}

src/libpython_clj2/python.clj

@@ -114,7 +114,17 @@ user> (py/py. np linspace 2 3 :num 10)
                                    (catch java.io.FileNotFoundException _ "{}"))
                               clojure.edn/read-string)
           _ (log/infof "Pre-initialize-fn %s" (some-> python-edn-opts :pre-initialize-fn))
+          _ (def python-edn-opts python-edn-opts)
           _ (some-> python-edn-opts :pre-initialize-fn requiring-resolve (apply []))
+          _ (some-> python-edn-opts :pre-initialize-fn)
+          ;_ ( (requiring-resolve 'libpython-clj2.python.uv/sync-python-setup))
+
+          ;(require 'libpython-clj2.python.uv)
+
+          ;(requiring-resolve )
+
+          ;(-> 'libpython-clj2.python.uv/char-seq namespace symbol require)
+          ;(resolve 'libpython-clj2.python.uv/char-seq)
           options (merge python-edn-opts options)
           info (py-info/detect-startup-info options)
           _ (log/infof "Startup info %s" info)
@@ -820,3 +830,13 @@ user> c
   [symbols input]
   `(let [~symbols ~input]
      ~@(for [s symbols] `(def ~s ~s))))
+
+
+(comment
+  (require 'libpython-clj2.python)
+  (require 'libpython-clj2.python.uv)
+
+  (libpython-clj2.python/initialize!)
+  (libpython-clj2.python/run-simple-string "import sys; print(sys.path)")
+  (libpython-clj2.python/import-module "openai")
+  (libpython-clj2.python/import-module "langextract"))

src/libpython_clj2/python/uv.clj

@@ -7,18 +7,16 @@
 
 (defn write-pyproject-toml! [deps-edn]
 
-  (let [
-        
-        python-deps
-        (:python-deps deps-edn) 
-        
+  (let [python-deps
+        (:python-deps deps-edn)
+
         ;python-version (:python-version deps-edn)
-        
+
         py-project-header-lines ["[project]"
                                  "name = \"temp\""
                                  "version = \"0.0\""
                                  ;(format "requires-python = \"==%s\"" python-version) 
-                                  ]
+                                 ]
         python-deps-lines
         (map
          (fn [dep]
@@ -28,18 +26,17 @@
         py-project-lines
         (concat
          py-project-header-lines
-         [ "dependencies = ["]
+         ["dependencies = ["]
          python-deps-lines
-         "]\n")
-        ]
+         "]\n")]
 
     (spit "pyproject.toml"
           (str/join "\n" py-project-lines))))
 
 (defn char-seq
   [^java.io.Reader rdr]
   (let [chr (.read rdr)]
-    (if (>= chr 0)
+    (when (>= chr 0)
       (do
         ;(def chr chr)
         (print (char (Integer. chr)))
@@ -48,12 +45,12 @@
 
 
 (defn start-and-print! [process-args]
-  (let [args 
-        (concat [{:env { "RENV_CONFIG_INSTALL_VERBOSE" "TRUE"}}]
-                     process-args)
-        p 
+  (let [args
+        (concat [{:env {"RENV_CONFIG_INSTALL_VERBOSE" "TRUE"}}]
+                process-args)
+        p
         (apply process/start args)]
-    
+
     (with-open [in-rdr (java.io.InputStreamReader. (.getInputStream p))
                 err-rdr (java.io.InputStreamReader. (.getErrorStream p))]
 
@@ -63,42 +60,14 @@
       (dorun (char-seq err-rdr)))))
 
 
-(defn setup-python! []
-  (println "Synchronize python venv with uv sync. This might take a few minutes")
+(defn sync-python-setup! []
+  (println "Synchronize python venv at .venv with 'uv sync'. This might take a few minutes")
   (let [deps-edn
         (->
-         (slurp "deps.edn")
-         edn/read-string)
-        
-        ]
+         (slurp "python.edn")
+         edn/read-string)]
     (write-pyproject-toml! deps-edn)
-    (start-and-print! [ "unbuffer" "uv" "sync" "--python" (-> deps-edn :python-version)]))
-  )
+    (start-and-print! ["uv" "sync" "--python" (-> deps-edn :python-version)])))
+
+
 
-(defn setup-r! []
-  (let [renv-lock
-        (->
-         (slurp "deps.edn")
-         edn/read-string
-         :renv-deps
-         (json/generate-string {:pretty true}))]
-    (spit "renv.lock" renv-lock))
-  
-  (start-and-print! ["rm" "-rf" "renv"])
-  (start-and-print! ["rm" ".Rprofile"])
-  (start-and-print! ["Rscript" "-e" "renv::init()"])
-  (start-and-print! ["Rscript" "-e" "renv::restore()"]))
-
-(defn setup! [& args]
-  (setup-python!)
-  ;(setup-r!)
-  )
-
-(comment
-  (require 'libpython-clj2.python)
-  (require 'libpython-clj2.python.uv)
-  (libpython-clj2.python.uv/setup!)
-  (libpython-clj2.python/initialize! :python-executable ".venv/bin/python")
-  (libpython-clj2.python/run-simple-string "import sys; print(sys.path)")
-  (libpython-clj2.python/import-module "openai")
-  )