diff --git a/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectPoolMgr.java b/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectPoolMgr.java
index b64bcdd928454e..643908e52c15ed 100644
--- a/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectPoolMgr.java
+++ b/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectPoolMgr.java
@@ -53,7 +53,12 @@ public ConnectPoolMgr(int maxConnections) {
 
     public void timeoutChecker(long now) {
         for (ConnectContext connectContext : connectionMap.values()) {
-            connectContext.checkTimeout(now);
+            try {
+                connectContext.checkTimeout(now);
+            } catch (Throwable t) {
+                LOG.warn("failed to check timeout for connection, connectionId: {}, user: {}",
+                        connectContext.getConnectionId(), connectContext.getQualifiedUser(), t);
+            }
         }
     }
 
diff --git a/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectScheduler.java b/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectScheduler.java
index 32ea481fa9fb7d..b22e89cf209567 100644
--- a/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectScheduler.java
+++ b/fe/fe-core/src/main/java/org/apache/doris/qe/ConnectScheduler.java
@@ -160,9 +160,13 @@ public Map<String, AtomicInteger> getUserConnectionMap() {
     private class TimeoutChecker extends TimerTask {
         @Override
         public void run() {
-            long now = System.currentTimeMillis();
-            connectPoolMgr.timeoutChecker(now);
-            flightSqlConnectPoolMgr.timeoutChecker(now);
+            try {
+                long now = System.currentTimeMillis();
+                connectPoolMgr.timeoutChecker(now);
+                flightSqlConnectPoolMgr.timeoutChecker(now);
+            } catch (Throwable t) {
+                LOG.warn("failed to check connection timeout", t);
+            }
         }
     }
 }
diff --git a/fe/fe-core/src/test/java/org/apache/doris/qe/ConnectSchedulerTest.java b/fe/fe-core/src/test/java/org/apache/doris/qe/ConnectSchedulerTest.java
index 9898a7cf1d4d7e..7f750d37dee6f4 100644
--- a/fe/fe-core/src/test/java/org/apache/doris/qe/ConnectSchedulerTest.java
+++ b/fe/fe-core/src/test/java/org/apache/doris/qe/ConnectSchedulerTest.java
@@ -31,6 +31,7 @@
 import org.slf4j.LoggerFactory;
 
 import java.nio.channels.SocketChannel;
+import java.util.concurrent.atomic.AtomicInteger;
 import java.util.concurrent.atomic.AtomicLong;
 
 public class ConnectSchedulerTest {
@@ -105,4 +106,39 @@ public void testSubmitTooMany() throws InterruptedException {
         ConnectContext context = new ConnectContext();
         Assert.assertTrue(scheduler.submit(context));
     }
+
+    @Test
+    public void testTimeoutCheckerContinuesAfterContextException() {
+        ConnectPoolMgr connectPoolMgr = new ConnectPoolMgr(10);
+        ThrowingConnectContext throwingContext = new ThrowingConnectContext();
+        CountingConnectContext countingContext = new CountingConnectContext();
+        throwingContext.setConnectionId(1);
+        countingContext.setConnectionId(2);
+        connectPoolMgr.getConnectionMap().put(throwingContext.getConnectionId(), throwingContext);
+        connectPoolMgr.getConnectionMap().put(countingContext.getConnectionId(), countingContext);
+
+        connectPoolMgr.timeoutChecker(System.currentTimeMillis());
+
+        Assert.assertEquals(1, throwingContext.checkCount.get());
+        Assert.assertEquals(1, countingContext.checkCount.get());
+    }
+
+    private static class ThrowingConnectContext extends ConnectContext {
+        private final AtomicInteger checkCount = new AtomicInteger(0);
+
+        @Override
+        public void checkTimeout(long now) {
+            checkCount.incrementAndGet();
+            throw new RuntimeException("mock check timeout exception");
+        }
+    }
+
+    private static class CountingConnectContext extends ConnectContext {
+        private final AtomicInteger checkCount = new AtomicInteger(0);
+
+        @Override
+        public void checkTimeout(long now) {
+            checkCount.incrementAndGet();
+        }
+    }
 }