From 3b6c2187772049a573b7f949d9cd26bc41793c6a Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 17 Feb 2026 10:28:18 +0000 Subject: [PATCH 01/13] Added contact for PRJNA670487: Sylvain Raffaele --- .../contacts/allContacts.xml | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 8f7e022c..4c4d8324 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -15,6 +15,30 @@ + + sylvain.raffaele + Sylvain Raffaele + LIPME, INRAE, CNRS + sylvain.raffaele@inrae.fr +
28 chemin de borde rouge
+ Castanet tolosan + + 31320 + France + + + + stefan.kusch + Stefan Kusch + Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University + +
+ Aachen + + + Germany + + d.perets D. Perets From 204724425befa576f9627ceaf0de7080228d71ef Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 17 Feb 2026 11:55:12 +0000 Subject: [PATCH 02/13] Removed (First author) contact from allContacts.xml - Contact not referenced in PRJNA670487 presenter - Maintaining only sylvain.raffaele for this dataset --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 4c4d8324..15b23841 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -27,17 +27,6 @@ France - - stefan.kusch - Stefan Kusch - Unit of Plant Molecular Cell Biology, Institute for Biology I, RWTH Aachen University - -
- Aachen - - - Germany - d.perets From e3fbed4a0910cae3078597e189fd0da8a1fbec69 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 26 Feb 2026 14:44:37 +0000 Subject: [PATCH 03/13] Updated contact for PRJNA670487: Sylvain Raffaele --- Model/lib/xml/datasetPresenters/contacts/allContacts.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 15b23841..4d48ab13 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -18,9 +18,9 @@ sylvain.raffaele Sylvain Raffaele - LIPME, INRAE, CNRS + Laboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France sylvain.raffaele@inrae.fr -
28 chemin de borde rouge
+
Castanet tolosan 31320 From 99015e86f1a2f7594eced710cbf3621b8c9d8549 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 30 Mar 2026 11:30:49 +0100 Subject: [PATCH 04/13] Add contacts for Botrytis cinerea (PRJNA915611) RNA-seq dataset. - Added contact Xuncheng Wang, 1706380435@pku.edu.cn, Peking Universit, Beijing, Chin for PRJNA915611 --- .../contacts/allContacts.xml | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 4d48ab13..0f95be51 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40774,4 +40774,28 @@ Academy of Sciences + + xuncheng.wang + Xuncheng Wang + Peking University + 1706380435@pku.edu.cn +
+ Beijing + + + China + + + + mei.liu + Mei Liu + Peking University + +
+ Beijing + + + China + + From e9ae8c9cd5ee99c70c7d81fcfc08b5e1e1dabcad Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 30 Mar 2026 12:32:14 +0100 Subject: [PATCH 05/13] Add Nathalie Poussereau contact for Botrytis cinerea RNA-seq (PRJNA1104610) dataset. - Dataset: PacC transcription factor pH-responsive gene regulation study - PMID: 39385086 - Organism: Botrytis cinerea B05.10 - Added nathalie.poussereau contact to allContacts.xml - Email: nathalie.poussereau@univ-lyon1.fr --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 0f95be51..ab4b7036 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40798,4 +40798,16 @@ Academy of Sciences China + + nathalie.poussereau + Nathalie Poussereau + Université Claude Bernard Lyon 1, INSA Lyon, Bayer SAS, MAP, UMR5240, Villeurbanne, France + nathalie.poussereau@univ-lyon1.fr +
+ Villeurbanne + + 69100 + France + + From b966aeb02ce2676e7e76239989573c31ff05522a Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 09:57:11 +0100 Subject: [PATCH 06/13] Remove Nathalie Poussereau contact for PRJNA1104610 --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index ab4b7036..745da5e8 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40798,16 +40798,5 @@ Academy of Sciences China - - nathalie.poussereau - Nathalie Poussereau - Université Claude Bernard Lyon 1, INSA Lyon, Bayer SAS, MAP, UMR5240, Villeurbanne, France - nathalie.poussereau@univ-lyon1.fr -
- Villeurbanne - - 69100 - France - From 122939566ded6dad4c8d87ed865da112b367f793 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Thu, 2 Apr 2026 10:50:20 +0100 Subject: [PATCH 07/13] Add Tsutomu Arie contact for Fusarium oxysporum (PRJNA662919) RNA-seq dataset. - Dataset: Morphological differentiation transcriptomics - PMID: 34108627 - Organism: Fusarium oxysporum isolate Cong:1-1 - Added Tsutomu Arie, arie@cc.tuat.ac.jp, Osaka Prefecture University, Japan --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 745da5e8..3890b454 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40798,5 +40798,16 @@ Academy of Sciences China + + tsutomu.arie + Tsutomu Arie + Osaka Prefecture University + +
+ + + + Japan + From 389179793c87afd21c20da08be17075ee2a333ac Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 27 Apr 2026 11:03:21 +0100 Subject: [PATCH 08/13] Add Natural Resources Institute Finland contact for Phytophthora cactorum RNA-seq (PRJNA805371) dataset. - Dataset: Comparative transcriptome analysis of P. cactorum wild-type and mutant strains - Organism: Phytophthora cactorum - Added Submitting institution Natural Resources Institute Finland (Luke) contact to allContacts.xml --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 3890b454..4636e7ae 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40810,4 +40810,16 @@ Academy of Sciences Japan + + natural.resources.institute.finland.luke + Natural Resources Institute Finland (Luke) + Natural Resources Institute Finland (Luke) + +
+ Helsinki + + + Finland + + From 4b000bcf4ae1a2284503e6330fc2437da0af4b7e Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 27 Apr 2026 11:56:51 +0100 Subject: [PATCH 09/13] Add University of California contact for Phytophthora infestans RNA-seq (PRJNA407960) dataset. - Dataset: Gene expression profiling of P. infestans during plant infection and in culture - Organism: Phytophthora infestans (hemibiotrophic oomycete) - Samples: 27 runs (9 infected tissue dual RNA-seq + 18 pure culture) - Timepoints: Early, middle, late infection stages; 3 biological replicates - Library: Illumina HiSeq 2500, paired-end, unstranded (RANDOM selection) - Added University of California contact to allContacts.xml --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 4636e7ae..480f606f 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40822,4 +40822,15 @@ Academy of Sciences Finland + + uoc + University of California + University of California + +
+ + + + + From c85eef341b32e79edcb56d1d9ac11f8c784044f2 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 27 Apr 2026 14:43:38 +0100 Subject: [PATCH 10/13] Add Suomeng Dong contact for Phytophthora sojae (PRJNA1083222) RNA-seq dataset. - Dataset: Gene expression profiling of P. sojae during soybean infection at biotrophic and necrotrophic stages - PMID: 39671117 - GEO: GSE260751 - Organism: Phytophthora sojae strain P6497 - Added suomeng.dong.njau contact to allContacts.xml - Email: smdong@njau.edu.cn - Affiliation: Nanjing Agricultural University, Department of Plant Pathology --- .../xml/datasetPresenters/contacts/allContacts.xml | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 480f606f..358c2894 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40833,4 +40833,15 @@ Academy of Sciences + + + suomeng.dong.njau + Suomeng Dong + Nanjing Agricultural University, Department of Plant Pathology + smdong@njau.edu.cn +
Sanya Institute of Nanjing Agricultural University
+ Nanjing + 210095 + China + From cf9d868dcb8abb6ac60fb351bceef1b361fdb8df Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Mon, 27 Apr 2026 16:37:45 +0100 Subject: [PATCH 11/13] Add Hebei Agricultural University contact for Puccinia triticina (PRJNA605036) RNA-seq dataset. - Dataset: Temporal transcriptome analysis of Puccinia triticina leaf rust during wheat infection - Organism: Puccinia triticina (hemibiotrophic fungal pathogen) - Submitting Institution: Hebei Agricultural University - Location: Baoding, Hebei, China - Added Hebei Agricultural University contact to allContacts.xml --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 358c2894..fabd781b 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40844,4 +40844,16 @@ Academy of Sciences 210095 China + + + Hebei.Agricultural.University + Hebei Agricultural University + Hebei Agricultural University, Department of Plant Pathology + +
Baoding
+ Baoding + Hebei + + China + From 7e37ae4d4f7730c998c502b207b83b67f6aa5d93 Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 28 Apr 2026 11:42:58 +0100 Subject: [PATCH 12/13] =?UTF-8?q?Add=20Technische=20Universit=C3=A4t=20M?= =?UTF-8?q?=C3=BCnchen=20contact=20for=20Ramularia=20collo-cygni=20(PRJNA4?= =?UTF-8?q?29749)=20RNA-seq=20dataset.=20-=20Dataset:=20Transcriptomics=20?= =?UTF-8?q?of=20Ramularia=20collo-cygni=20under=20different=20culture=20co?= =?UTF-8?q?nditions=20-=20Organism:=20Ramularia=20collo-cygni=20(fungal=20?= =?UTF-8?q?leaf=20pathogen=20causing=20ramularia=20leaf=20blotch)=20-=20Ad?= =?UTF-8?q?ded=20submitting=20Institution:=20Chair=20of=20Genome-oriented?= =?UTF-8?q?=20Bioinformatics,=20Technische=20Universit=C3=A4t=20M=C3=BCnch?= =?UTF-8?q?en?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../contacts/allContacts.xml | 24 +++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index fabd781b..864fb126 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40856,4 +40856,28 @@ Academy of Sciences China + + + rongyu.li.gzu + Rongyu Li + Guizhou University, Institute of Crop Protection, College of Agriculture + ryil@gzu.edu.cn +
Guiyang
+ Guiyang + Guizhou + 550025 + China + + + + Technische.Universitaet.Muenchen + Technische Universität München + Chair of Genome-oriented Bioinformatics + +
Munich
+ Munich + Bavaria + + Germany + From a32803d3e7f0781299e04f3199a3722b9940cc6a Mon Sep 17 00:00:00 2001 From: Sadik Muzemil <116672423+sadikmz@users.noreply.github.com> Date: Tue, 28 Apr 2026 12:21:47 +0100 Subject: [PATCH 13/13] Add SRUC contact for Ramularia collo-cygni (PRJEB14791) dual RNA-seq dataset. - Dataset: Dual RNA-seq of host-pathogen interaction during R. collo-cygni infection of barley - Organism: Ramularia collo-cygni (fungal pathogen) and Hordeum vulgare (barley host) - Submitting Institution: Scottish Rural University College (SRUC) - Location: Edinburgh, Scotland, United Kingdom - Added SRUC contact to allContacts.xml --- .../xml/datasetPresenters/contacts/allContacts.xml | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml index 864fb126..859ff61d 100644 --- a/Model/lib/xml/datasetPresenters/contacts/allContacts.xml +++ b/Model/lib/xml/datasetPresenters/contacts/allContacts.xml @@ -40880,4 +40880,16 @@ Academy of Sciences Germany + + + SRUC + Scottish Rural University College + Scottish Rural University College + +
Edinburgh
+ Edinburgh + Scotland + + United Kingdom +