From c2f2cafb28a83f57d0f2530a287da3c08b7fe8cb Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Fri, 20 Mar 2026 12:24:44 -0400 Subject: [PATCH 01/64] First pass at antismash query --- .../lib/wdk/model/questions/geneQuestions.xml | 29 ++++++++ .../wdk/model/questions/params/geneParams.xml | 74 +++++++++++++++++++ .../model/questions/params/organismParams.xml | 40 ++++++++++ .../model/questions/queries/geneQueries.xml | 45 +++++++++++ 4 files changed, 188 insertions(+) diff --git a/Model/lib/wdk/model/questions/geneQuestions.xml b/Model/lib/wdk/model/questions/geneQuestions.xml index 7690d0569..907692a2e 100644 --- a/Model/lib/wdk/model/questions/geneQuestions.xml +++ b/Model/lib/wdk/model/questions/geneQuestions.xml @@ -931,6 +931,35 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " + + + + + + + + + + + + + + + + + + diff --git a/Model/lib/wdk/model/questions/params/geneParams.xml b/Model/lib/wdk/model/questions/params/geneParams.xml index fa686ea6a..6bbb98eba 100644 --- a/Model/lib/wdk/model/questions/params/geneParams.xml +++ b/Model/lib/wdk/model/questions/params/geneParams.xml @@ -5104,6 +5104,29 @@ products of your selected type (or types).

+ + + Select one or more secondary metabolite cluster categories. + + + + + Select an annotation. Options filter based on the selected category. + + + @@ -9711,6 +9734,57 @@ end as term + + + + + + + + + + + + + + + + + + + + + diff --git a/Model/lib/wdk/model/questions/params/organismParams.xml b/Model/lib/wdk/model/questions/params/organismParams.xml index 5fb56512b..f89f7de75 100644 --- a/Model/lib/wdk/model/questions/params/organismParams.xml +++ b/Model/lib/wdk/model/questions/params/organismParams.xml @@ -438,6 +438,21 @@ + + Select the organism(s) to search. + + pruneNodesWithSingleExtendingChild + showOnlyPreferredOrganisms + + + @@ -1170,6 +1185,31 @@ + + + + + + + + + diff --git a/Model/lib/wdk/model/questions/queries/geneQueries.xml b/Model/lib/wdk/model/questions/queries/geneQueries.xml index c0163792a..51f742bf8 100644 --- a/Model/lib/wdk/model/questions/queries/geneQueries.xml +++ b/Model/lib/wdk/model/questions/queries/geneQueries.xml @@ -5769,6 +5769,51 @@ select distinct ta.gene_source_id + + + + + + + + + + + + + + + + + + + From 2044a0b30bbaa3f54d2c39122d50002a2032ef83 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Fri, 20 Mar 2026 13:49:55 -0400 Subject: [PATCH 02/64] Add attributes and summary --- Model/lib/wdk/model/questions/geneQuestions.xml | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/questions/geneQuestions.xml b/Model/lib/wdk/model/questions/geneQuestions.xml index 907692a2e..2a7a1a95d 100644 --- a/Model/lib/wdk/model/questions/geneQuestions.xml +++ b/Model/lib/wdk/model/questions/geneQuestions.xml @@ -948,9 +948,17 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " + + + + + + + + Date: Fri, 20 Mar 2026 13:50:41 -0400 Subject: [PATCH 03/64] Add default and fix depended params --- Model/lib/wdk/model/questions/params/geneParams.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Model/lib/wdk/model/questions/params/geneParams.xml b/Model/lib/wdk/model/questions/params/geneParams.xml index 6bbb98eba..53c194780 100644 --- a/Model/lib/wdk/model/questions/params/geneParams.xml +++ b/Model/lib/wdk/model/questions/params/geneParams.xml @@ -5113,7 +5113,7 @@ products of your selected type (or types).

dependedParamRef="organismParams.antismash_organism" includeProjects="FungiDB,UniDB"> Select one or more secondary metabolite cluster categories. - +
prompt="Annotation" multiPick="true" quote="true" - dependedParamRef="geneParams.antismash_category" + dependedParamRef="geneParams.antismash_category, organismParams.antismash_organism" includeProjects="FungiDB,UniDB"> Select an annotation. Options filter based on the selected category. From ca1c9fef4530f546ea041e9b04a0116cac3a2d7c Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Tue, 24 Mar 2026 11:55:17 -0400 Subject: [PATCH 04/64] Add quotes to project_id macro --- Model/lib/wdk/model/questions/params/organismParams.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/questions/params/organismParams.xml b/Model/lib/wdk/model/questions/params/organismParams.xml index f89f7de75..d3dae0663 100644 --- a/Model/lib/wdk/model/questions/params/organismParams.xml +++ b/Model/lib/wdk/model/questions/params/organismParams.xml @@ -1196,7 +1196,7 @@ FROM apidbtuning.geneattributes ga , apidb.antismashfeature af WHERE ga.na_feature_id = af.na_feature_id - AND (ga.project_id = @PROJECT_ID@ OR 'UniDB' = @PROJECT_ID@) + AND (ga.project_id = '@PROJECT_ID@' OR 'UniDB' = '@PROJECT_ID@') ) SELECT DISTINCT term , parentTerm From fce6d016a8d9b1d6faa112e3ec7dc9038748f39e Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Tue, 24 Mar 2026 11:56:29 -0400 Subject: [PATCH 05/64] Defaults and ordering --- .../lib/wdk/model/questions/params/geneParams.xml | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/Model/lib/wdk/model/questions/params/geneParams.xml b/Model/lib/wdk/model/questions/params/geneParams.xml index 53c194780..6d05bb687 100644 --- a/Model/lib/wdk/model/questions/params/geneParams.xml +++ b/Model/lib/wdk/model/questions/params/geneParams.xml @@ -5113,7 +5113,7 @@ products of your selected type (or types).

dependedParamRef="organismParams.antismash_organism" includeProjects="FungiDB,UniDB"> Select one or more secondary metabolite cluster categories. - +
dependedParamRef="geneParams.antismash_category, organismParams.antismash_organism" includeProjects="FungiDB,UniDB"> Select an annotation. Options filter based on the selected category. - + @@ -9767,6 +9769,11 @@ end as term From 1dced116f0851066d2feedd41ee5bf3ccbd76ef6 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Tue, 24 Mar 2026 11:57:18 -0400 Subject: [PATCH 06/64] Multipick, so no option for any --- Model/lib/wdk/model/questions/queries/geneQueries.xml | 1 - 1 file changed, 1 deletion(-) diff --git a/Model/lib/wdk/model/questions/queries/geneQueries.xml b/Model/lib/wdk/model/questions/queries/geneQueries.xml index 51f742bf8..2cd87f618 100644 --- a/Model/lib/wdk/model/questions/queries/geneQueries.xml +++ b/Model/lib/wdk/model/questions/queries/geneQueries.xml @@ -5808,7 +5808,6 @@ select distinct ta.gene_source_id AND (af.antismash_annotation IN ($$antismash_annotation$$) -- OR ($$antismash_annotation$$ = 'biosynthetic any' AND af.antismash_annotation like 'biosynthetic%') OR ($$antismash_annotation$$ = 'unknown' AND af.antismash_annotation IS NULL) - OR ($$antismash_annotation$$ = 'any') ) ]]> From c91c9a2ea59834928f5c2123a8c91f671f41473a Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Tue, 24 Mar 2026 13:09:09 -0400 Subject: [PATCH 07/64] Fix to handle genes that appear in more than one cluster --- .../model/questions/queries/geneQueries.xml | 66 ++++++++++++------- 1 file changed, 43 insertions(+), 23 deletions(-) diff --git a/Model/lib/wdk/model/questions/queries/geneQueries.xml b/Model/lib/wdk/model/questions/queries/geneQueries.xml index 2cd87f618..c7312a10e 100644 --- a/Model/lib/wdk/model/questions/queries/geneQueries.xml +++ b/Model/lib/wdk/model/questions/queries/geneQueries.xml @@ -5783,32 +5783,52 @@ select distinct ta.gene_source_id + From 557375c3dd456eb9c2460a410c286ef0d50a9c1b Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Tue, 24 Mar 2026 13:09:39 -0400 Subject: [PATCH 08/64] Add overlapping clusters column --- Model/lib/wdk/model/questions/geneQuestions.xml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/questions/geneQuestions.xml b/Model/lib/wdk/model/questions/geneQuestions.xml index 2a7a1a95d..b2b83232f 100644 --- a/Model/lib/wdk/model/questions/geneQuestions.xml +++ b/Model/lib/wdk/model/questions/geneQuestions.xml @@ -948,7 +948,7 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " @@ -957,6 +957,7 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " + From b6eae0fa810e0a23da7f62372802fc618353aedb Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Thu, 26 Mar 2026 11:00:41 -0400 Subject: [PATCH 09/64] Add JBrowse links in results --- .../lib/wdk/model/questions/geneQuestions.xml | 12 ++++- .../model/questions/queries/geneQueries.xml | 49 ++++++++++++------- 2 files changed, 43 insertions(+), 18 deletions(-) diff --git a/Model/lib/wdk/model/questions/geneQuestions.xml b/Model/lib/wdk/model/questions/geneQuestions.xml index b2b83232f..d9b5e1ac1 100644 --- a/Model/lib/wdk/model/questions/geneQuestions.xml +++ b/Model/lib/wdk/model/questions/geneQuestions.xml @@ -948,7 +948,7 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " @@ -957,7 +957,17 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " + + + + + + $$sequence_id$$:$$cluster_start$$-$$cluster_end$$ + ]]> + + diff --git a/Model/lib/wdk/model/questions/queries/geneQueries.xml b/Model/lib/wdk/model/questions/queries/geneQueries.xml index c7312a10e..6202067fe 100644 --- a/Model/lib/wdk/model/questions/queries/geneQueries.xml +++ b/Model/lib/wdk/model/questions/queries/geneQueries.xml @@ -5783,12 +5783,16 @@ select distinct ta.gene_source_id + + + ', + gc2.sequence_id, ':', gc2.cluster_start, '-', gc2.cluster_end, '' + ), + ', ' ORDER BY gc2.cluster_start + ) AS overlapping_clusters + FROM ranked r + JOIN gene_clusters gc2 + ON gc2.source_id = r.source_id + AND gc2.antismash_cluster_id != r.antismash_cluster_id + WHERE r.rn = 1 + GROUP BY r.source_id ) - SELECT source_id, gene_source_id, project_id, + SELECT r.source_id, r.gene_source_id, r.project_id, 10 AS wdk_weight, 'Y' AS matched_result, - category, antismash_annotation, cluster_start, cluster_end, sequence_id, - overlapping_clusters - FROM ranked - WHERE rn = 1 + r.category, r.antismash_annotation, r.cluster_start, r.cluster_end, r.sequence_id, + r.org_abbrev, + GREATEST(r.cluster_start - 1000, 1) AS cluster_context_start, + r.cluster_end + 1000 AS cluster_context_end, + COALESCE(go.overlapping_clusters, 'No') AS overlapping_clusters + FROM ranked r + LEFT JOIN gene_overlaps go ON go.source_id = r.source_id + WHERE r.rn = 1 ]]> From a64314141dd671e827d9518de79242838023fac4 Mon Sep 17 00:00:00 2001 From: John Brestelli Date: Fri, 20 Mar 2026 16:06:37 -0400 Subject: [PATCH 10/64] restore non-gene profile unions lost in Oracle->Postgres migration Add SubjectResult, OntologyTermResult, and compound profile unions (results.CompoundMassSpec and apidb.CompoundMassSpecResult) back to the Profile tuning table. Uses LEFT JOIN on apidb.organism with COALESCE for datasets where taxon_id is NULL. Also adds corresponding external dependencies and removes stale commented-out entries for Lopit and EigenGeneWgcna. Co-Authored-By: Claude Sonnet 4.6 --- .../xml/tuningManager/apiTuningManager.xml | 150 +++++++++++++++++- 1 file changed, 148 insertions(+), 2 deletions(-) diff --git a/Model/lib/xml/tuningManager/apiTuningManager.xml b/Model/lib/xml/tuningManager/apiTuningManager.xml index 59a14d1b2..9d51e8fe0 100644 --- a/Model/lib/xml/tuningManager/apiTuningManager.xml +++ b/Model/lib/xml/tuningManager/apiTuningManager.xml @@ -2225,13 +2225,17 @@ create index Organism_projectId_idx&1 ON OrganismAttributes&1 (project_id, sourc One profile per gene per dataset. Used for graphs. + + + + + + @@ -2239,6 +2243,8 @@ create index Organism_projectId_idx&1 ON OrganismAttributes&1 (project_id, sourc + + @@ -2464,6 +2470,146 @@ create index Organism_projectId_idx&1 ON OrganismAttributes&1 (project_id, sourc AND d.external_database_id = r.external_database_id AND profile.node_set_id = ps.node_set_id AND ps.external_database_release_id = r.external_database_release_id + UNION ALL + -- SubjectResult profiles + SELECT + ds.name as dataset_name, ds.type as dataset_type, coalesce(o.abbrev, 'no_org_abbrev') as org_abbrev, + ds.subtype as dataset_subtype, 'values' AS profile_type, ps.node_type, + sr.subject as source_id, sr.node_set_id as profile_study_id, + ps.name as profile_set_name, + null as profile_set_suffix, + CASE WHEN replace(sr.profile_as_string, 'NA' || CHR(9), '') = 'NA' THEN null ELSE sr.profile_as_string END as profile_as_string, + '-1' as max_value, '1' as min_value, '-1' as max_timepoint, '-1' as min_timepoint + FROM apidb.DataSource ds + JOIN sres.ExternalDatabase d ON ds.name = d.name + JOIN sres.ExternalDatabaseRelease r ON ds.version = r.version + AND d.external_database_id = r.external_database_id + LEFT JOIN apidb.organism o ON ds.taxon_id = o.taxon_id + JOIN study.NodeSet ps ON ps.external_database_release_id = r.external_database_release_id + JOIN (SELECT sl.node_set_id, result.subject, + string_agg(coalesce(round(result.value::numeric, 2)::varchar, 'NA'), chr(9) order by pan.node_order_num) as profile_as_string + FROM study.ProtocolAppNode pan, NodeSetOutputNode sl, apidb.SubjectResult result + WHERE result.protocol_app_node_id = sl.protocol_app_node_id + AND result.protocol_app_node_id = pan.protocol_app_node_id + GROUP BY sl.node_set_id, result.subject + ) sr ON sr.node_set_id = ps.node_set_id + UNION ALL + -- OntologyTermResult profiles + SELECT + ds.name as dataset_name, ds.type as dataset_type, coalesce(o.abbrev, 'no_org_abbrev') as org_abbrev, + ds.subtype as dataset_subtype, 'value' AS profile_type, ps.node_type, + otr.term_name as source_id, otr.node_set_id as profile_study_id, + ps.name as profile_set_name, + null as profile_set_suffix, + CASE WHEN replace(otr.profile_as_string, 'NA' || CHR(9), '') = 'NA' THEN null ELSE otr.profile_as_string END as profile_as_string, + '-1' as max_value, '1' as min_value, '-1' as max_timepoint, '-1' as min_timepoint + FROM apidb.DataSource ds + JOIN sres.ExternalDatabase d ON ds.name = d.name + JOIN sres.ExternalDatabaseRelease r ON ds.version = r.version + AND d.external_database_id = r.external_database_id + LEFT JOIN apidb.organism o ON ds.taxon_id = o.taxon_id + JOIN study.NodeSet ps ON ps.external_database_release_id = r.external_database_release_id + JOIN (SELECT sl.node_set_id, ot.name as term_name, + string_agg(coalesce(round(result.value::numeric, 2)::varchar, 'NA'), chr(9) order by pan.node_order_num) as profile_as_string + FROM study.ProtocolAppNode pan, NodeSetOutputNode sl, + apidb.OntologyTermResult result, sres.OntologyTerm ot + WHERE ot.ontology_term_id = result.ontology_term_id + AND result.protocol_app_node_id = sl.protocol_app_node_id + AND result.protocol_app_node_id = pan.protocol_app_node_id + GROUP BY sl.node_set_id, ot.name + ) otr ON otr.node_set_id = ps.node_set_id + UNION ALL + -- Compound profiles from results.CompoundMassSpec (values with isotopomers) + SELECT + ds.name as dataset_name, ds.type as dataset_type, coalesce(o.abbrev, 'no_org_abbrev') as org_abbrev, + ds.subtype as dataset_subtype, 'values' AS profile_type, ps.node_type, + CASE WHEN cp.isotopomer IS NOT NULL THEN ca.source_id || '|' || cp.isotopomer + ELSE ca.source_id + END as source_id, + cp.node_set_id as profile_study_id, + ps.name as profile_set_name, + null as profile_set_suffix, + CASE WHEN replace(cp.profile_as_string, 'NA' || CHR(9), '') = 'NA' THEN null ELSE cp.profile_as_string END as profile_as_string, + '-1' as max_value, '1' as min_value, '-1' as max_timepoint, '-1' as min_timepoint + FROM apidb.DataSource ds + JOIN sres.ExternalDatabase d ON ds.name = d.name + JOIN sres.ExternalDatabaseRelease r ON ds.version = r.version + AND d.external_database_id = r.external_database_id + LEFT JOIN apidb.organism o ON ds.taxon_id = o.taxon_id + JOIN study.NodeSet ps ON ps.external_database_release_id = r.external_database_release_id + JOIN (SELECT sl.node_set_id, result.compound_id, result.isotopomer, + string_agg(coalesce(round(result.value::numeric, 2)::varchar, 'NA'), chr(9) order by pan.node_order_num) as profile_as_string + FROM study.ProtocolAppNode pan, NodeSetOutputNode sl, + (SELECT max(value) as value, compound_id, protocol_app_node_id, isotopomer + FROM results.CompoundMassSpec + GROUP BY compound_id, protocol_app_node_id, isotopomer) result + WHERE result.protocol_app_node_id = sl.protocol_app_node_id + AND result.protocol_app_node_id = pan.protocol_app_node_id + GROUP BY sl.node_set_id, result.compound_id, result.isotopomer + ) cp ON cp.node_set_id = ps.node_set_id + JOIN webready.CompoundAttributes ca ON ca.id = cp.compound_id + UNION ALL + -- Compound profiles from apidb.CompoundMassSpecResult (values) + SELECT + ds.name as dataset_name, ds.type as dataset_type, coalesce(o.abbrev, 'no_org_abbrev') as org_abbrev, + ds.subtype as dataset_subtype, 'values' AS profile_type, ps.node_type, + CASE WHEN cpc.isotopomer IS NOT NULL THEN ca.source_id || '|' || cpc.isotopomer + WHEN cph.mass IS NOT NULL THEN ca.source_id || '|' || cph.mass || '|' || cph.retention_time + ELSE ca.source_id + END as source_id, + cmsr_agg.node_set_id as profile_study_id, + ps.name as profile_set_name, + null as profile_set_suffix, + CASE WHEN replace(cmsr_agg.profile_as_string, 'NA' || CHR(9), '') = 'NA' THEN null ELSE cmsr_agg.profile_as_string END as profile_as_string, + '-1' as max_value, '1' as min_value, '-1' as max_timepoint, '-1' as min_timepoint + FROM apidb.DataSource ds + JOIN sres.ExternalDatabase d ON ds.name = d.name + JOIN sres.ExternalDatabaseRelease r ON ds.version = r.version + AND d.external_database_id = r.external_database_id + LEFT JOIN apidb.organism o ON ds.taxon_id = o.taxon_id + JOIN study.NodeSet ps ON ps.external_database_release_id = r.external_database_release_id + JOIN (SELECT sl.node_set_id, cmsr.compound_peaks_id, + string_agg(coalesce(round(cmsr.value::numeric, 2)::varchar, 'NA'), chr(9) order by pan.node_order_num) as profile_as_string + FROM study.ProtocolAppNode pan, NodeSetOutputNode sl, apidb.CompoundMassSpecResult cmsr + WHERE cmsr.protocol_app_node_id = sl.protocol_app_node_id + AND cmsr.protocol_app_node_id = pan.protocol_app_node_id + AND pan.name like '%mean%' + GROUP BY sl.node_set_id, cmsr.compound_peaks_id + ) cmsr_agg ON cmsr_agg.node_set_id = ps.node_set_id + JOIN apidb.CompoundPeaksChebi cpc ON cpc.compound_peaks_id = cmsr_agg.compound_peaks_id + JOIN apidb.CompoundPeaks cph ON cph.compound_peaks_id = cpc.compound_peaks_id + JOIN webready.CompoundAttributes ca ON ca.id = cpc.compound_id + UNION ALL + -- Compound profiles from apidb.CompoundMassSpecResult (percentiles) + SELECT + ds.name as dataset_name, ds.type as dataset_type, coalesce(o.abbrev, 'no_org_abbrev') as org_abbrev, + ds.subtype as dataset_subtype, 'percentiles' AS profile_type, ps.node_type, + CASE WHEN cpc.isotopomer IS NOT NULL THEN ca.source_id || '|' || cpc.isotopomer + WHEN cph.mass IS NOT NULL THEN ca.source_id || '|' || cph.mass || '|' || cph.retention_time + ELSE ca.source_id + END as source_id, + cmsr_agg.node_set_id as profile_study_id, + ps.name as profile_set_name, + null as profile_set_suffix, + CASE WHEN replace(cmsr_agg.profile_as_string, 'NA' || CHR(9), '') = 'NA' THEN null ELSE cmsr_agg.profile_as_string END as profile_as_string, + '-1' as max_value, '1' as min_value, '-1' as max_timepoint, '-1' as min_timepoint + FROM apidb.DataSource ds + JOIN sres.ExternalDatabase d ON ds.name = d.name + JOIN sres.ExternalDatabaseRelease r ON ds.version = r.version + AND d.external_database_id = r.external_database_id + LEFT JOIN apidb.organism o ON ds.taxon_id = o.taxon_id + JOIN study.NodeSet ps ON ps.external_database_release_id = r.external_database_release_id + JOIN (SELECT sl.node_set_id, cmsr.compound_peaks_id, + string_agg(coalesce(round(cmsr.percentile::numeric, 2)::varchar, 'NA'), chr(9) order by pan.node_order_num) as profile_as_string + FROM study.ProtocolAppNode pan, NodeSetOutputNode sl, apidb.CompoundMassSpecResult cmsr + WHERE cmsr.protocol_app_node_id = sl.protocol_app_node_id + AND cmsr.protocol_app_node_id = pan.protocol_app_node_id + AND pan.name like '%mean%' + GROUP BY sl.node_set_id, cmsr.compound_peaks_id + ) cmsr_agg ON cmsr_agg.node_set_id = ps.node_set_id + JOIN apidb.CompoundPeaksChebi cpc ON cpc.compound_peaks_id = cmsr_agg.compound_peaks_id + JOIN apidb.CompoundPeaks cph ON cph.compound_peaks_id = cpc.compound_peaks_id + JOIN webready.CompoundAttributes ca ON ca.id = cpc.compound_id ]]> From 8e882390ce50ec68a65b8146d538d09b252073e1 Mon Sep 17 00:00:00 2001 From: John Brestelli <39096257+jbrestel@users.noreply.github.com> Date: Wed, 25 Mar 2026 12:46:02 -0400 Subject: [PATCH 11/64] Fix ranked_values query: replace Oracle rownum with PostgreSQL row_number() OVER (#173) --- Model/lib/xml/dataPlotter/queries.xml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/Model/lib/xml/dataPlotter/queries.xml b/Model/lib/xml/dataPlotter/queries.xml index bfd7b77da..600f7bd27 100644 --- a/Model/lib/xml/dataPlotter/queries.xml +++ b/Model/lib/xml/dataPlotter/queries.xml @@ -89,11 +89,11 @@ From ae32eb59736ac0b18587d5e91e7a62edaf41bfec Mon Sep 17 00:00:00 2001 From: Cristina Aurrecoechea Date: Wed, 25 Mar 2026 13:09:15 -0400 Subject: [PATCH 12/64] do not offer orthologs table for download until UI gets fixed --- Model/lib/wdk/ontology/individuals.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index a3136ed84..8d3a2aa60 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -296,7 +296,7 @@ GeneRecordClasses.GeneRecordClass.GOSlim http://edamontology.org/topic_1775 Func GeneRecordClasses.GeneRecordClass.GOTerms http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table GOTerms transcript record download GeneRecordClasses.GeneRecordClass.Y2hInteractions http://edamontology.org/topic_0128 Protein Interactions GeneRecordClasses.GeneRecordClass table Y2hInteractions gene record download GeneRecordClasses.GeneRecordClass.Orthologs http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass table Orthologs gene record -GeneRecordClasses.GeneRecordClass.OrthologsLite http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass table OrthologsLite gene download +GeneRecordClasses.GeneRecordClass.OrthologsLite http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass table OrthologsLite gene GeneRecordClasses.GeneRecordClass.MetabolicPathwaysMPMP http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MetabolicPathwaysMPMP transcript 1 record download GeneRecordClasses.GeneRecordClass.MetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MetabolicPathways transcript 2 record download GeneRecordClasses.GeneRecordClass.Alias http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Alias transcript record download From 5e105547cb501dd5c74aa1be4324ad27535fcfea Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Thu, 26 Mar 2026 09:24:38 -0400 Subject: [PATCH 13/64] show EC Number source for just the specific project, unless it is UniDB, in the ECNumber Q --- Model/lib/wdk/model/questions/params/geneParams.xml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/questions/params/geneParams.xml b/Model/lib/wdk/model/questions/params/geneParams.xml index 6d05bb687..88b18711f 100644 --- a/Model/lib/wdk/model/questions/params/geneParams.xml +++ b/Model/lib/wdk/model/questions/params/geneParams.xml @@ -8386,7 +8386,9 @@ products of your selected type (or types).

WHEN 'Hagai' THEN 'MPMP' ELSE evidence_code END as term - FROM dots.aaSequenceEnzymeClass + FROM dots.aaSequenceEnzymeClass asec, webready.TranscriptAttributes_p ta + WHERE ta.aa_sequence_id = asec.aa_sequence_id + AND (ta.project_id = '@PROJECT_ID@' or 'UniDB' = '@PROJECT_ID@') From 38aea08c05af40e385f08026db85bdd8889b6adf Mon Sep 17 00:00:00 2001 From: Ryan Doherty Date: Fri, 27 Mar 2026 15:36:28 -0400 Subject: [PATCH 14/64] bookkeeping --- .../wdk/model/records/commentTableQueries.xml | 1 + .../lib/wdk/model/records/geneTableQueries.xml | 17 +++++++++++------ 2 files changed, 12 insertions(+), 6 deletions(-) diff --git a/Model/lib/wdk/model/records/commentTableQueries.xml b/Model/lib/wdk/model/records/commentTableQueries.xml index 28f63e8c4..ae7188b7e 100644 --- a/Model/lib/wdk/model/records/commentTableQueries.xml +++ b/Model/lib/wdk/model/records/commentTableQueries.xml @@ -66,6 +66,7 @@ + + @@ -780,6 +781,7 @@ + @@ -833,7 +835,7 @@ FROM webready.GeneAttributes_p ga , @VDI_CONTROL_SCHEMA@.AvailableUserDatasets da - , @VDI_DATASETS_SCHEMA@.UD_NAFEATUREEXPRESSION naf + , @VDI_DATASETS_SCHEMA@.UD_NAFEATUREEXPRESSION naf , @VDI_DATASETS_SCHEMA@.UD_PROTOCOLAPPNODE pan , @VDI_DATASETS_SCHEMA@.UD_PROFILESET ps , ( @@ -961,13 +963,14 @@ + - - + + @@ -976,7 +979,7 @@ - + - - + + @@ -1139,6 +1143,7 @@ from ( + From c91852a63473a4be981ba4f21f0b939c36d195ca Mon Sep 17 00:00:00 2001 From: steve-fischer-200 Date: Thu, 26 Mar 2026 14:30:28 -0400 Subject: [PATCH 15/64] limit gene orthologs to within project --- Model/lib/wdk/model/records/geneTableQueries.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/records/geneTableQueries.xml b/Model/lib/wdk/model/records/geneTableQueries.xml index 59674a1eb..309b2a94b 100644 --- a/Model/lib/wdk/model/records/geneTableQueries.xml +++ b/Model/lib/wdk/model/records/geneTableQueries.xml @@ -2539,7 +2539,7 @@ from ( JOIN apidbtuning.TranscriptAttributes ota ON tog.source_id = ota.source_id JOIN apidb.Organism o ON ota.taxon_id = o.taxon_id WHERE gog.org_abbrev IN (%%PARTITION_KEYS%%) - AND (ota.project_id = '@PROJECT_ID@' or 'UniDB' = '@PROJECT_ID@') + AND ota.project_id = gog.project_id --only include orthologs within project ), OrthologousTranscripts as ( SELECT distinct all_pairs.* , COALESCE(syn_pairs.is_syntenic, 0) AS is_syntenic From 8116039903b14e9fe22513907ad244f87a862611 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Fri, 27 Mar 2026 12:21:38 -0400 Subject: [PATCH 16/64] Model fix for cytoscape rendering bug --- .../wdk/model/records/pathwayTableQueries.xml | 16 ++++++++++++---- 1 file changed, 12 insertions(+), 4 deletions(-) diff --git a/Model/lib/wdk/model/records/pathwayTableQueries.xml b/Model/lib/wdk/model/records/pathwayTableQueries.xml index f076d094f..e220efdfa 100644 --- a/Model/lib/wdk/model/records/pathwayTableQueries.xml +++ b/Model/lib/wdk/model/records/pathwayTableQueries.xml @@ -169,7 +169,7 @@ @@ -198,9 +198,17 @@ From f0ffba32ebc8590aa528a069bb5d34c65584d71c Mon Sep 17 00:00:00 2001 From: John Brestelli Date: Sat, 28 Mar 2026 01:52:08 -0400 Subject: [PATCH 17/64] fix toxo rnaseq transcription summary --- Model/lib/xml/dataPlotter/queries.xml | 1 + 1 file changed, 1 insertion(+) diff --git a/Model/lib/xml/dataPlotter/queries.xml b/Model/lib/xml/dataPlotter/queries.xml index 600f7bd27..960232815 100644 --- a/Model/lib/xml/dataPlotter/queries.xml +++ b/Model/lib/xml/dataPlotter/queries.xml @@ -28,6 +28,7 @@ and pan.name like '%secondstrand%') or pan.name like '%unstranded%') and p.profile_set_name not like '%nonunique%' + and ps.node_type not like '%nonunique%' and p.profile_set_name = ps.study_name and ps.protocol_app_node_id = pan.protocol_app_node_id and p.dataset_name = dd.name From 1c2d485502e57a6a064aabc0474366c1fc1778ce Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Mon, 30 Mar 2026 10:07:59 -0400 Subject: [PATCH 18/64] fix the MergedRnaSeq track --- Model/lib/perl/JbrowseOrgSpecificNaTracks.pm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm b/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm index 49e177d95..5e80d6c8c 100644 --- a/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm +++ b/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm @@ -96,7 +96,7 @@ sub processOrganism { &addApolloGFF($dbh, $result, $organismAbbrev, $applicationType); } - &addMergedRnaSeq($dbh, $result, $datasetProperties, $projectName, $nameForFileNames, $organismAbbrev, $buildNumber); + &addMergedRnaSeq($result, $datasetProperties, $projectName, $nameForFileNames, $organismAbbrev, $buildNumber); &addLongReadRNASeq($result, $datasetProperties, $nameForFileNames, $webservicesDir, $projectName, $buildNumber, $applicationType); @@ -213,7 +213,7 @@ sub addApolloGFF { } sub addMergedRnaSeq { - my ($dbh, $result, $datasetProperties, $projectName, $nameForFileNames, $organismAbbrev, $buildNumber) = @_; + my ($result, $datasetProperties, $projectName, $nameForFileNames, $organismAbbrev, $buildNumber) = @_; my @urlArray; my $genomeName; @@ -236,7 +236,7 @@ sub addMergedRnaSeq { my $keyName = $bigwigFileName; $keyName =~ s/_/ /g; - my $bigWigRelativePath = "/var/www/Common/apiSiteFilesMirror/webServices/${projectName}/build-${buildNumber}/${nameForFileNames}/bigwig/${sampleName}/mergedBigwigs/*"; + my $bigWigRelativePath = "/var/www/Common/apiSiteFilesMirror/webServices/${projectName}/build-${buildNumber}/${nameForFileNames}/bulkrnaseq/bigwig/${sampleName}/mergedBigwigs/*"; my @bigwigFiles = glob($bigWigRelativePath); my $shortAttribution = $rnaSeqDatasets->{$dataset}->{shortAttribution}; foreach(@bigwigFiles){ @@ -244,12 +244,12 @@ sub addMergedRnaSeq { my $bigwigName = (split '/', $bigwigPath)[-1]; my $shortBigwigName = $bigwigName; my $shortBigwigName = substr($shortBigwigName,0, -3); - my $bigwigUrl = "/a/service/jbrowse/store?data=" . uri_escape_utf8("${nameForFileNames}/bigwig/${sampleName}/mergedBigwigs/${bigwigName}"); + my $bigwigUrl = "/a/service/jbrowse/store?data=" . uri_escape_utf8("${nameForFileNames}/bulkrnaseq/bigwig/${sampleName}/mergedBigwigs/${bigwigName}"); my $template = { url=>${bigwigUrl}, name=> ${shortBigwigName}, color=> 'black' }; push (@urlArray, $template); push (@urlArrayProject, $template); } - } + } ### Print out combinedRNAseq track for organism my $arrayLength = @urlArray; From a6c880ed67307a4b24b2b4d11c7bf616cc78f5a8 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Mon, 30 Mar 2026 13:39:48 -0400 Subject: [PATCH 19/64] remove 33 hard-coded CGH Array tracks --- .../tcruCLBrenerEsmeraldo-like/tracks.conf | 660 ------------------ 1 file changed, 660 deletions(-) diff --git a/Model/lib/jbrowse/tcruCLBrenerEsmeraldo-like/tracks.conf b/Model/lib/jbrowse/tcruCLBrenerEsmeraldo-like/tracks.conf index 4dfc60da3..ead066d36 100644 --- a/Model/lib/jbrowse/tcruCLBrenerEsmeraldo-like/tracks.conf +++ b/Model/lib/jbrowse/tcruCLBrenerEsmeraldo-like/tracks.conf @@ -16,663 +16,3 @@ onClick.content=function(track, feature){ var c = track.browser.config; return c menuTemplate+=json:{"label": "View Details", "content": "function(track, feature){ var c = track.browser.config; return c.arrayElementTitle(track, feature, 'Expression')}"} region_feature_densities=true #citation = Trypanosoma cruzi Oligonucleotide Array v1; Manufacturer = PFGRC; Contact: Todd Minning, tminning@uga.edu; (For details: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL8132) - -[tracks.Cnv10R26] -query.feature=cnv:ArrayJBrowse -query.sample=10R26 (CGH Array) -category=Genetic Variation -key=10R26 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=10R26 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.Cnv92_80] -query.feature=cnv:ArrayJBrowse -query.sample=92.80 (CGH Array) -category=Genetic Variation -key=92.80 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=92.80 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.Cnv9210160P] -query.feature=cnv:ArrayJBrowse -query.sample=9210160P (CGH Array) -category=Genetic Variation -key=9210160P (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=9210160P (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvARMA18] -query.feature=cnv:ArrayJBrowse -query.sample=ARMA18 (CGH Array) -category=Genetic Variation -key=ARMA18 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=ARMA18 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvBrazil] -query.feature=cnv:ArrayJBrowse -query.sample=Brazil (CGH Array) -category=Genetic Variation -key=Brazil (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Brazil (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvBug2148] -query.feature=cnv:ArrayJBrowse -query.sample=Bug2148 (CGH Array) -category=Genetic Variation -key=Bug2148 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Bug2148 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvCBB] -query.feature=cnv:ArrayJBrowse -query.sample=CBB (CGH Array) -category=Genetic Variation -key=CBB (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=CBB (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvCL] -query.feature=cnv:ArrayJBrowse -query.sample=CL (CGH Array) -category=Genetic Variation -key=CL (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=CL (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvCanIII] -query.feature=cnv:ArrayJBrowse -query.sample=CanIII (CGH Array) -category=Genetic Variation -key=CanIII (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=CanIII (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvChaco23] -query.feature=cnv:ArrayJBrowse -query.sample=Chaco23 (CGH Array) -category=Genetic Variation -key=Chaco23 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Chaco23 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvChaco9] -query.feature=cnv:ArrayJBrowse -query.sample=Chaco9 (CGH Array) -category=Genetic Variation -key=Chaco9 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Chaco9 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvChinata] -query.feature=cnv:ArrayJBrowse -query.sample=Chinata (CGH Array) -category=Genetic Variation -key=Chinata (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Chinata (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvColombiana] -query.feature=cnv:ArrayJBrowse -query.sample=Colombiana (CGH Array) -category=Genetic Variation -key=Colombiana (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Colombiana (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvEPV20] -query.feature=cnv:ArrayJBrowse -query.sample=EPV20 (CGH Array) -category=Genetic Variation -key=EPV20 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=EPV20 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvEsmeraldo] -query.feature=cnv:ArrayJBrowse -query.sample=Esmeraldo (CGH Array) -category=Genetic Variation -key=Esmeraldo (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Esmeraldo (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvG] -query.feature=cnv:ArrayJBrowse -query.sample=G (CGH Array) -category=Genetic Variation -key=G (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=G (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvM5631] -query.feature=cnv:ArrayJBrowse -query.sample=M5631 (CGH Array) -category=Genetic Variation -key=M5631 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=M5631 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvM6421] -query.feature=cnv:ArrayJBrowse -query.sample=M6421 (CGH Array) -category=Genetic Variation -key=M6421 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=M6421 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvM78] -query.feature=cnv:ArrayJBrowse -query.sample=M78 (CGH Array) -category=Genetic Variation -key=M78 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=M78 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvMontalvania] -query.feature=cnv:ArrayJBrowse -query.sample=Montalvania (CGH Array) -category=Genetic Variation -key=Montalvania (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Montalvania (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvP251] -query.feature=cnv:ArrayJBrowse -query.sample=P251 (CGH Array) -category=Genetic Variation -key=P251 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=P251 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvPalDa_cl9] -query.feature=cnv:ArrayJBrowse -query.sample=PalDa_cl9 (CGH Array) -category=Genetic Variation -key=PalDa_cl9 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=PalDa_cl9 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvPara4] -query.feature=cnv:ArrayJBrowse -query.sample=Para4 (CGH Array) -category=Genetic Variation -key=Para4 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Para4 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvSABP19] -query.feature=cnv:ArrayJBrowse -query.sample=SABP19 (CGH Array) -category=Genetic Variation -key=SABP19 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=SABP19 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvStC10R] -query.feature=cnv:ArrayJBrowse -query.sample=StC10R (CGH Array) -category=Genetic Variation -key=StC10R (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=StC10R (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvSylvio_X10] -query.feature=cnv:ArrayJBrowse -query.sample=Sylvio_X10 (CGH Array) -category=Genetic Variation -key=Sylvio_X10 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Sylvio_X10 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvTCC] -query.feature=cnv:ArrayJBrowse -query.sample=TCC (CGH Array) -category=Genetic Variation -key=TCC (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=TCC (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvTEDa2_cl4] -query.feature=cnv:ArrayJBrowse -query.sample=TEDa2_cl4 (CGH Array) -category=Genetic Variation -key=TEDa2_cl4 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=TEDa2_cl4 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvTEP6_cl5] -query.feature=cnv:ArrayJBrowse -query.sample=TEP6_cl5 (CGH Array) -category=Genetic Variation -key=TEP6_cl5 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=TEP6_cl5 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvTu18] -query.feature=cnv:ArrayJBrowse -query.sample=Tu18 (CGH Array) -category=Genetic Variation -key=Tu18 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Tu18 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvTu18_cl1] -query.feature=cnv:ArrayJBrowse -query.sample=Tu18_cl1 (CGH Array) -category=Genetic Variation -key=Tu18_cl1 (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Tu18_cl1 (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvTulahuen] -query.feature=cnv:ArrayJBrowse -query.sample=Tulahuen (CGH Array) -category=Genetic Variation -key=Tulahuen (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Tulahuen (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } - -[tracks.CnvY] -query.feature=cnv:ArrayJBrowse -query.sample=Y (CGH Array) -category=Genetic Variation -key=Y (CGH Array) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/Wiggle/XYPlot -metadata.subcategory=CGH Array -metadata.trackType=XYPlot -metadata.dataset=Comparative Genomic Hybridizations of 33 strains -metadata.description=Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization -style.height=40 -yScalePosition=left -max_score=3 -label=Y (CGH Array) -min_score=-3 -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName('tcruCLBrenerEsmeraldo-like_cghArrayPlatform_GPL10781_RSRC', 'Comparative Genomic Hybridizations of 33 strains'); } -fmtMetaValue_Description=function() { return datasetDescription('Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization ', ''); } From 97129a70d5e64c0666231883a2849db14985f6d4 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Mon, 30 Mar 2026 13:41:41 -0400 Subject: [PATCH 20/64] fix addCnvArray to add in the CGH Array tracks for tcruCLBrenerEsmeraldo-like org --- .../JBrowseTrackConfig/CnvArrayTrackConfig.pm | 22 +--------- Model/lib/perl/JbrowseOrgSpecificNaTracks.pm | 44 +++++++++---------- 2 files changed, 24 insertions(+), 42 deletions(-) diff --git a/Model/lib/perl/JBrowseTrackConfig/CnvArrayTrackConfig.pm b/Model/lib/perl/JBrowseTrackConfig/CnvArrayTrackConfig.pm index 8f9e9db80..b0bb12dc1 100644 --- a/Model/lib/perl/JBrowseTrackConfig/CnvArrayTrackConfig.pm +++ b/Model/lib/perl/JBrowseTrackConfig/CnvArrayTrackConfig.pm @@ -3,8 +3,6 @@ use base qw(ApiCommonModel::Model::JBrowseTrackConfig::CoverageTrackConfig); use strict; use warnings; -use ApiCommonModel::Model::JBrowseTrackConfig::RestStore; - sub getName {$_[0]->{name}} sub setName {$_[0]->{name} = $_[1] } @@ -19,25 +17,9 @@ sub new { $datasetConfig->setCategory("Genetic Variation"); $datasetConfig->setSubcategory("CGH Array"); - $self->setId("SNPs by coding potential"); - $self->setLabel("SNPs by coding potential"); + $self->setId($args->{key}); + $self->setLabel($args->{label}); $self->setName($args->{name}); - #$self->setDisplayType("JBrowse/View/Track/Wiggle/XYPlot"); - - my $name = $self->getName(); - - my $store; - - if($self->getApplicationType() eq 'jbrowse' || $self->getApplicationType() eq 'apollo') { - $store = ApiCommonModel::Model::JBrowseTrackConfig::RestStore->new($args); - $store->setQuery("cnv:ArrayJBrowse"); - $store->setQueryParamsHash({sample => $name}); - } - else { - # TODO - } - - $self->setStore($store); $self->setTrackTypeDisplay("XYPlot"); diff --git a/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm b/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm index 5e80d6c8c..1f3eca7fc 100644 --- a/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm +++ b/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm @@ -109,7 +109,7 @@ sub processOrganism { # other organism specific tracks if($organismAbbrev eq 'tcruCLBrenerEsmeraldo-like') { - &addCnvArray($dbh, $result, $projectName, $applicationType); + &addCnvArray($result, $projectName, $applicationType, $webservicesDir, $nameForFileNames, $buildNumber); } # TODO: Add back #if ($isAnnotated eq 'true'){ @@ -903,34 +903,34 @@ sub makeChipChipSmoothed { sub addCnvArray { - my ($dbh, $result, $projectName, $applicationType) = @_; - - my $sql = "select distinct pan.name -from study.protocolappnode pan - , study.study s - , study.studylink sl -where pan.PROTOCOL_APP_NODE_ID = sl.PROTOCOL_APP_NODE_ID -and sl.study_id = s.study_id -and s.name like 'tcruCLBrenerEsmeraldo-like_cghArrayExper_Tarelton_GSE23576_CNV_RSRC%' -order by pan.name"; - my $sh = $dbh->prepare($sql); - $sh->execute(); + my ($result, $projectName, $applicationType, $webservicesDir, $nameForFileNames, $buildNumber) = @_; + + my $datasetName = 'tcruCLBrenerEsmeraldo-like_cghArrayExper_Tarelton_GSE23576_CNV_RSRC'; + my $bigwigDir = "${webservicesDir}/${projectName}/build-${buildNumber}/${nameForFileNames}/cghArray/bigwig/${datasetName}"; my $summary = "Comparative Genomic Hybridization to determine regions of significant Copy Number Variation in T. cruzi strains with strain CL Brener as reference. Type I strains used include: Brazil, Chinata, Colombiana, M78, Montalvania, PalDa1 (clone 9), SylvioX10/4, TCC, TEDa2 (clone 4), TEP6 (clone 5). Type II-VI strains used include: Esmeraldo, M5631, Tu18 (clone 1), Tulahuen, wtCL, Y. Scores from Type I strain is shown in Green and from Type II-VI are show in Brown. Score value represents the number of strains showing CNV , with a postive score implying amplification and a negative score implying deletion with respect to CL Brener. CNV criteria: minimum log2 ratio of signal intensities (test strain/reference) +/- 0.6, minimum number of probes 5. For more details refer the following manuscript: Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization "; - while(my ($dataset) = $sh->fetchrow_array()) { + foreach my $bwFile (glob("${bigwigDir}/*.bw")) { + my $sample = $bwFile; + $sample =~ s{.*/}{}; + $sample =~ s/\.bw$//; + + my $relativePath = "${nameForFileNames}/cghArray/bigwig/${datasetName}/${sample}.bw"; my $cnv = ApiCommonModel::Model::JBrowseTrackConfig::CnvArrayTrackConfig->new({ - dataset_name => $dataset, - study_display_name => "Comparative Genomic Hybridizations of 33 strains", - description => $summary, - application_type => $applicationType, - name => $dataset, - })->getConfigurationObject(); + dataset_name => $datasetName, + study_display_name => "Comparative Genomic Hybridizations of 33 strains", + description => $summary, + application_type => $applicationType, + name => $sample, + label => $sample, + key => $sample, + relative_path_to_file => $relativePath, + project_name => $projectName, + build_number => $buildNumber, + })->getConfigurationObject(); push @{$result->{tracks}}, $cnv; - } - $sh->finish(); } From b8fb6afaa420e052a26bcd046854876ab0349183 Mon Sep 17 00:00:00 2001 From: Cristina Aurrecoechea Date: Wed, 1 Apr 2026 11:26:18 -0400 Subject: [PATCH 21/64] filter gene aliasquery by project so results include only organisms in this website --- Model/lib/wdk/model/records/geneAttributeQueries.xml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/records/geneAttributeQueries.xml b/Model/lib/wdk/model/records/geneAttributeQueries.xml index b02229dcc..ad0a81d83 100644 --- a/Model/lib/wdk/model/records/geneAttributeQueries.xml +++ b/Model/lib/wdk/model/records/geneAttributeQueries.xml @@ -163,7 +163,8 @@ WHERE ga.org_abbrev IN (%%PARTITION_KEYS%%) FROM apidbtuning.GeneId a, apidbtuning.GeneAttributes ga WHERE a.unique_mapping = 1 AND a.gene = ga.source_id - ]]> + AND ga.project_id = '@PROJECT_ID@' or 'UniDB' = '@PROJECT_ID@' + ]]> From b6c47c82dcef17268ce3db9cd66cc7767857bfc4 Mon Sep 17 00:00:00 2001 From: Cristina Aurrecoechea Date: Wed, 1 Apr 2026 13:16:11 -0400 Subject: [PATCH 22/64] fix ID locustag query, results only include IDs in this websites organisms --- Model/lib/wdk/model/questions/queries/geneQueries.xml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/questions/queries/geneQueries.xml b/Model/lib/wdk/model/questions/queries/geneQueries.xml index 6202067fe..65698f1f3 100644 --- a/Model/lib/wdk/model/questions/queries/geneQueries.xml +++ b/Model/lib/wdk/model/questions/queries/geneQueries.xml @@ -715,7 +715,7 @@ - + @@ -743,6 +743,7 @@ WHERE LOWER(gi.id) = LOWER(ds.gene_source_id) ) t WHERE t.gene = ta.gene_source_id + and (ta.project_id = '@PROJECT_ID@' or 'UniDB' = '@PROJECT_ID@') GROUP BY ta.gene_source_id, ta.source_id, ta.project_id UNION SELECT @@ -753,6 +754,7 @@ MIN(ds.dataset_value_order) as dataset_order FROM apidbtuning.TranscriptAttributes ta, ( $$ds_gene_ids$$ ) ds WHERE lower(ta.source_id) = LOWER(ds.gene_source_id ) + and (ta.project_id = '@PROJECT_ID@' or 'UniDB' = '@PROJECT_ID@') GROUP BY ta.gene_source_id, ta.source_id, ta.project_id ) t GROUP BY source_id, gene_source_id, project_id From 6c74e553a695261f46aa600c82b660944407d41e Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Fri, 3 Apr 2026 09:07:28 -0400 Subject: [PATCH 23/64] fix SQL of GenesByGenericFoldChange Q to avoid "division by zero" error; \ consider only non-zero NaFeatureExpression rows for fold-change computation --- Model/lib/wdk/model/questions/queries/geneQueries.xml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Model/lib/wdk/model/questions/queries/geneQueries.xml b/Model/lib/wdk/model/questions/queries/geneQueries.xml index 65698f1f3..a11b3f463 100644 --- a/Model/lib/wdk/model/questions/queries/geneQueries.xml +++ b/Model/lib/wdk/model/questions/queries/geneQueries.xml @@ -3492,6 +3492,8 @@ $$regulated_dir$$ (greatest($$hard_floor$$,one.chosen) / greatest($$hard_floor$$,two.chosen)) >= $$fold_change$$ OR $$regulated_dir$$ (-(greatest($$hard_floor$$,two.chosen) / greatest($$hard_floor$$,one.chosen))) >= $$fold_change$$ ) + AND one.average + one.chosen + $$hard_floor$$ > 0 + AND two.average + two.chosen + $$hard_floor$$ > 0 ]]> From e290ff68442bd87d41df661272aebae44b86013f Mon Sep 17 00:00:00 2001 From: Cristina Aurrecoechea Date: Fri, 3 Apr 2026 10:45:10 -0400 Subject: [PATCH 24/64] fix OOM --- Model/lib/wdk/model/records/geneAttributeQueries.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/records/geneAttributeQueries.xml b/Model/lib/wdk/model/records/geneAttributeQueries.xml index ad0a81d83..8e1e2dbb0 100644 --- a/Model/lib/wdk/model/records/geneAttributeQueries.xml +++ b/Model/lib/wdk/model/records/geneAttributeQueries.xml @@ -163,7 +163,7 @@ WHERE ga.org_abbrev IN (%%PARTITION_KEYS%%) FROM apidbtuning.GeneId a, apidbtuning.GeneAttributes ga WHERE a.unique_mapping = 1 AND a.gene = ga.source_id - AND ga.project_id = '@PROJECT_ID@' or 'UniDB' = '@PROJECT_ID@' + AND (ga.project_id = '@PROJECT_ID@' or 'UniDB' = '@PROJECT_ID@') ]]> From 679920868c3e451d6376b61879cd17047b6ac474 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Sun, 5 Apr 2026 09:24:07 -0400 Subject: [PATCH 25/64] Hydropathy pbrowse track only if org is reference and not a HugeGenome --- Model/lib/perl/JbrowseOrgSpecificAaTracks.pm | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/Model/lib/perl/JbrowseOrgSpecificAaTracks.pm b/Model/lib/perl/JbrowseOrgSpecificAaTracks.pm index 832d1e039..678e50e14 100644 --- a/Model/lib/perl/JbrowseOrgSpecificAaTracks.pm +++ b/Model/lib/perl/JbrowseOrgSpecificAaTracks.pm @@ -37,7 +37,7 @@ sub processOrganism { &addSignalPeptide($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); &addTmhmm($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); &addLowComplexity($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); - &addHydropathy($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); + &addSecondaryStructureHelix($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); &addSecondaryStructureCoil($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); &addSecondaryStructureStrand($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); @@ -46,7 +46,8 @@ sub processOrganism { } if ($isReference eq 'true' && $isHugeGenome eq 'false'){ - &addIedb($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); + &addIedb($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); + &addHydropathy($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); } &addProteinExpressionMassSpec($result, $datasetProps, $webservicesDir, $nameForFileName, $projectName, $applicationType, $buildNumber); From 5585e5f8fc469447c065a98c2df9885f36da0db4 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Tue, 7 Apr 2026 07:47:04 -0400 Subject: [PATCH 26/64] fix MassSpecGraphs table SQL --- .../model/records/compoundTableQueries.xml | 69 +++++++++---------- 1 file changed, 34 insertions(+), 35 deletions(-) diff --git a/Model/lib/wdk/model/records/compoundTableQueries.xml b/Model/lib/wdk/model/records/compoundTableQueries.xml index e7db24f43..9df8447e9 100644 --- a/Model/lib/wdk/model/records/compoundTableQueries.xml +++ b/Model/lib/wdk/model/records/compoundTableQueries.xml @@ -223,42 +223,41 @@ From 27c46f26fb2b960f8efee4ef0421140dfb13e988 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Tue, 7 Apr 2026 14:23:11 -0400 Subject: [PATCH 27/64] fix wdkRefs for FungalGPIForm and CommunityExpComments tables --- .../model/datasetInjector/AnnotatedGenome.java | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java b/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java index 69602eb1b..3afbd47e8 100644 --- a/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java +++ b/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java @@ -287,10 +287,7 @@ public void addModelReferences() { addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "GeneLinkouts"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "Seqedits"); - - addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "AllProducts"); - addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "CommunityExpComments"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "SignalP"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "TMHMM"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "Orthologs"); @@ -299,7 +296,6 @@ public void addModelReferences() { addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "GeneId"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "GeneName"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "BlastpForm"); - addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "FungalGPIForm"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "InterPro"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "InterProForm"); addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "MendelGPIForm"); @@ -325,8 +321,17 @@ public void addModelReferences() { addWdkReference("GeneRecordClasses.GeneRecordClass", "attribute", "SyntenyGbrowseUrl"); } + // FungalGPIForm only for FungiDB + if (!(projectName.equals("FungiDB"))){ + addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "FungalGPIForm"); + } - + // CommunityExpComments for only GiardiaDB and FungiDB + if (!(projectName.equals("GiardiaDB")) || + (projectName.equals("FungiDB"))){ + addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "CommunityExpComments"); + } + // no Apollo updates for CryptoDB, HostDB, GiardiaDB, MicrosporidiaDB and TrichDB if (!(projectName.equals("CryptoDB")) || (projectName.equals("HostDB")) || From 2bf694350247ba592d4acb42fb45012d2a5cf251 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Thu, 9 Apr 2026 11:48:41 -0400 Subject: [PATCH 28/64] fix syntax errors in CommunityComments SQL --- Model/lib/wdk/model/records/commentTableQueries.xml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Model/lib/wdk/model/records/commentTableQueries.xml b/Model/lib/wdk/model/records/commentTableQueries.xml index ae7188b7e..2c578927d 100644 --- a/Model/lib/wdk/model/records/commentTableQueries.xml +++ b/Model/lib/wdk/model/records/commentTableQueries.xml @@ -201,7 +201,7 @@ authortable.authors FROM @REMOTE_COMMENT_SCHEMA@MappedComment c - INNER JOIN @REMOTE_COMMENT_SCHEMA@comment_users u c.user_id = u.user_id + INNER JOIN @REMOTE_COMMENT_SCHEMA@comment_users u ON c.user_id = u.user_id LEFT JOIN ( SELECT comment_id, count(*) as filecount FROM @REMOTE_COMMENT_SCHEMA@CommentFile @@ -223,7 +223,7 @@ SELECT comment_id, count(stable_id) as geneCount FROM @REMOTE_COMMENT_SCHEMA@MappedComment GROUP BY comment_id - ) gene_counts c.comment_id = gene_counts.comment_id + ) gene_counts ON c.comment_id = gene_counts.comment_id WHERE ('@PROJECT_ID@' = 'UniDB' OR c.project_name = '@PROJECT_ID@') AND c.comment_target_id = 'gene' AND c.review_status_id != 'rejected' From a2b08dffc039375f5e2f2f2919160a33a6b2501c Mon Sep 17 00:00:00 2001 From: John Brestelli Date: Tue, 14 Apr 2026 15:33:52 -0400 Subject: [PATCH 29/64] Add .worktrees to .gitignore Co-Authored-By: Claude Sonnet 4.6 --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index a56646eb2..3c07ee7fb 100644 --- a/.gitignore +++ b/.gitignore @@ -40,3 +40,4 @@ target # JBrowse /Model/lib/jbrowse/auto_generated/ +.worktrees From dc4cdd05c8d6e776f3a797746201c6c8fe7f8831 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Fri, 17 Apr 2026 12:55:17 -0400 Subject: [PATCH 30/64] fix alignedTranscripts tracks for various orgs --- Model/lib/jbrowse/aalbSTECLA/tracks.conf | 7 ++----- Model/lib/jbrowse/acasNeff/tracks.conf | 7 ++----- Model/lib/jbrowse/acolNgousso/tracks.conf | 7 ++----- Model/lib/jbrowse/aquaSANGWE/tracks.conf | 7 ++----- Model/lib/jbrowse/cquiJHB/tracks.conf | 7 ++----- Model/lib/jbrowse/functions.conf | 4 ++-- Model/lib/jbrowse/gfusIAEA2018/tracks.conf | 7 ++----- Model/lib/jbrowse/gmorYale/tracks.conf | 9 +++------ Model/lib/jbrowse/hcapG186AR/tracks.conf | 13 +++++-------- Model/lib/jbrowse/hcapG217B/tracks.conf | 13 +++++-------- Model/lib/jbrowse/hcapH88/tracks.conf | 13 +++++-------- .../lib/jbrowse/lbraMHOMBR75M2904_2019/tracks.conf | 7 ++----- Model/lib/jbrowse/ldonLV9/tracks.conf | 7 ++----- Model/lib/jbrowse/rproCDC/tracks.conf | 7 ++----- Model/lib/jbrowse/ssalATCC50377/tracks.conf | 7 ++----- Model/lib/jbrowse/treeQM6a/tracks.conf | 7 ++----- 16 files changed, 42 insertions(+), 87 deletions(-) diff --git a/Model/lib/jbrowse/aalbSTECLA/tracks.conf b/Model/lib/jbrowse/aalbSTECLA/tracks.conf index 3812a94fe..3b309ce97 100644 --- a/Model/lib/jbrowse/aalbSTECLA/tracks.conf +++ b/Model/lib/jbrowse/aalbSTECLA/tracks.conf @@ -1,11 +1,8 @@ [tracks.aalbSTECLA_bld54Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='aalbSTECLA_bld54Transcripts_transcript_sequences_RSRC' category=Gene Models key=Anopheles albimanus STECLA build 54 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=AalbimanusSTECLA/alignedTranscripts/gff/aalbSTECLA_bld54Transcripts_transcript_sequences_RSRC/aalbSTECLA_bld54Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/acasNeff/tracks.conf b/Model/lib/jbrowse/acasNeff/tracks.conf index 6bbe540f0..2fee6b733 100644 --- a/Model/lib/jbrowse/acasNeff/tracks.conf +++ b/Model/lib/jbrowse/acasNeff/tracks.conf @@ -1,11 +1,8 @@ [tracks.acasNeff_bld56Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='acasNeff_bld56Transcripts_transcript_sequences_RSRC' category=Gene Models key=Transcripts for build 56 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=AcastellaniiNeff/alignedTranscripts/gff/acasNeff_bld56Transcripts_transcript_sequences_RSRC/acasNeff_bld56Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/acolNgousso/tracks.conf b/Model/lib/jbrowse/acolNgousso/tracks.conf index a93b374b7..1feb6defe 100644 --- a/Model/lib/jbrowse/acolNgousso/tracks.conf +++ b/Model/lib/jbrowse/acolNgousso/tracks.conf @@ -1,11 +1,8 @@ [tracks.acolNgousso_bld54Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='acolNgousso_bld54Transcripts_transcript_sequences_RSRC' category=Gene Models key=Anopheles coluzzii Ngousso build 54 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=AcoluzziiNgousso/alignedTranscripts/gff/acolNgousso_bld54Transcripts_transcript_sequences_RSRC/acolNgousso_bld54Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/aquaSANGWE/tracks.conf b/Model/lib/jbrowse/aquaSANGWE/tracks.conf index 2ccd5acba..b80029a91 100644 --- a/Model/lib/jbrowse/aquaSANGWE/tracks.conf +++ b/Model/lib/jbrowse/aquaSANGWE/tracks.conf @@ -1,11 +1,8 @@ [tracks.aquaSANGWE_bld54Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='aquaSANGWE_bld54Transcripts_transcript_sequences_RSRC' category=Gene Models key=Anopheles quadriannulatus SANGWE build 54 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=AquadriannulatusSANGWE/alignedTranscripts/gff/aquaSANGWE_bld54Transcripts_transcript_sequences_RSRC/aquaSANGWE_bld54Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/cquiJHB/tracks.conf b/Model/lib/jbrowse/cquiJHB/tracks.conf index f64bea8ec..20c74cdc6 100644 --- a/Model/lib/jbrowse/cquiJHB/tracks.conf +++ b/Model/lib/jbrowse/cquiJHB/tracks.conf @@ -1,11 +1,8 @@ [tracks.cquiJHB_bld65Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='cquiJHB_bld65Transcripts_transcript_sequences_RSRC' category=Gene Models key=Culex quinquefasciatus JHB 2020 transcripts from build 65 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=CquinquefasciatusJHB2020/alignedTranscripts/gff/cquiJHB_bld65Transcripts_transcript_sequences_RSRC/cquiJHB_bld65Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/functions.conf b/Model/lib/jbrowse/functions.conf index b2c5675a2..25209aadf 100644 --- a/Model/lib/jbrowse/functions.conf +++ b/Model/lib/jbrowse/functions.conf @@ -1988,9 +1988,9 @@ gffTssChabbert = function(track, feature) { sequenceTitle = function(track, feature) { var c = track.browser.config; var rows = new Array(); - var sourceId = feature.get("name"); + var sourceId = feature.get("transcriptId"); rows.push(c.twoColRow('ID:', sourceId)); - rows.push(c.twoColRow("Position:", c.positionNoStrandString(track.refSeq.name, feature.get("startm"), feature.get("end")))); + rows.push(c.twoColRow("Position:", c.positionNoStrandString(track.refSeq.name, feature.get("start"), feature.get("end")))); return c.table(rows); } processedTranscriptDetails = function(track, feature, featureDiv) { diff --git a/Model/lib/jbrowse/gfusIAEA2018/tracks.conf b/Model/lib/jbrowse/gfusIAEA2018/tracks.conf index 4585db8dc..69e3ad839 100644 --- a/Model/lib/jbrowse/gfusIAEA2018/tracks.conf +++ b/Model/lib/jbrowse/gfusIAEA2018/tracks.conf @@ -1,11 +1,8 @@ [tracks.gfusIAEA2018_bld65Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='gfusIAEA2018_bld65Transcripts_transcript_sequences_RSRC' category=Gene Models key=Glossina fuscipes IAEA 2018 transcripts from build 65 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=GfuscipesIAEA2018/alignedTranscripts/gff/gfusIAEA2018_bld65Transcripts_transcript_sequences_RSRC/gfusIAEA2018_bld65Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/gmorYale/tracks.conf b/Model/lib/jbrowse/gmorYale/tracks.conf index 326106684..65e80c3ac 100644 --- a/Model/lib/jbrowse/gmorYale/tracks.conf +++ b/Model/lib/jbrowse/gmorYale/tracks.conf @@ -1,11 +1,8 @@ [tracks.gmorYale_bld53Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='gmorYale_bld53Transcripts_transcript_sequences_RSRC' category=Gene Models key=Glossina morsitans Yale build 53 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=GmorsitansYale/alignedTranscripts/gff/gmorYale_bld53Transcripts_transcript_sequences_RSRC/gmorYale_bld53Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey @@ -13,6 +10,6 @@ style.color={alternateTranscriptColor} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript metadata.dataset=Glossina morsitans Yale build 53 models -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("gmorYale_bld53Transcripts_transcript_sequences_RSRCz<", "Glossina morsitans Yale build 53 models"); } +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("gmorYale_bld53Transcripts_transcript_sequences_RSRC", "Glossina morsitans Yale build 53 models"); } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} onClick.content={sequenceTitleFxn} diff --git a/Model/lib/jbrowse/hcapG186AR/tracks.conf b/Model/lib/jbrowse/hcapG186AR/tracks.conf index dfe9f7715..1f8066d43 100644 --- a/Model/lib/jbrowse/hcapG186AR/tracks.conf +++ b/Model/lib/jbrowse/hcapG186AR/tracks.conf @@ -1,19 +1,16 @@ [tracks.hcapG186AR_bld63Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='hcapG186AR_bld63Transcripts_transcript_sequences_RSRC' category=Gene Models -key=Histoplasma capsulatum G186AR transcripts from build 63 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +key=Histoplasma capsulatum G186AR transcripts from build 63 models +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=HcapsulatumG186AR/alignedTranscripts/gff/hcapG186AR_bld63Transcripts_transcript_sequences_RSRC/hcapG186AR_bld63Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey style.color={alternateTranscriptColor} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript -metadata.dataset=Histoplasma capsulatum G186AR transcripts from build 63 models -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("hcapG186AR_bld63Transcripts_transcript_sequences_RSRC", "Histoplasma capsulatum G186AR transcripts from build 63 models"); } +metadata.dataset=Histoplasma capsulatum G186AR transcripts from build 63 models +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("hcapG186AR_bld63Transcripts_transcript_sequences_RSRC", "Histoplasma capsulatum G186AR transcripts from build 63 models"); } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} onClick.content={sequenceTitleFxn} diff --git a/Model/lib/jbrowse/hcapG217B/tracks.conf b/Model/lib/jbrowse/hcapG217B/tracks.conf index 312ca1265..928e42c6d 100644 --- a/Model/lib/jbrowse/hcapG217B/tracks.conf +++ b/Model/lib/jbrowse/hcapG217B/tracks.conf @@ -1,19 +1,16 @@ [tracks.hcapG217B_bld63Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='hcapG217B_bld63Transcripts_transcript_sequences_RSRC' category=Gene Models -key=Histoplasma capsulatum G217B transcripts from build 63 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +key=Histoplasma capsulatum G217B transcripts from build 63 models +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=HcapsulatumG217B/alignedTranscripts/gff/hcapG217B_bld63Transcripts_transcript_sequences_RSRC/hcapG217B_bld63Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey style.color={alternateTranscriptColor} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript -metadata.dataset=Histoplasma capsulatum G217B transcripts from build 63 models -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("hcapG217B_bld63Transcripts_transcript_sequences_RSRC", "Histoplasma capsulatum G217B transcripts from build 63 models"); } +metadata.dataset=Histoplasma capsulatum G217B transcripts from build 63 models +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("hcapG217B_bld63Transcripts_transcript_sequences_RSRC", "Histoplasma capsulatum G217B transcripts from build 63 models"); } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} onClick.content={sequenceTitleFxn} diff --git a/Model/lib/jbrowse/hcapH88/tracks.conf b/Model/lib/jbrowse/hcapH88/tracks.conf index b6359e504..6ff546345 100644 --- a/Model/lib/jbrowse/hcapH88/tracks.conf +++ b/Model/lib/jbrowse/hcapH88/tracks.conf @@ -1,19 +1,16 @@ [tracks.hcapH88_bld63Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='hcapH88_bld63Transcripts_transcript_sequences_RSRC' category=Gene Models -key=Histoplasma capsulatum H88 transcripts from build 63 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +key=Histoplasma capsulatum H88 transcripts from build 63 models +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=HcapsulatumH88/alignedTranscripts/gff/hcapH88_bld63Transcripts_transcript_sequences_RSRC/hcapH88_bld63Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey style.color={alternateTranscriptColor} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript -metadata.dataset=Histoplasma capsulatum H88 transcripts from build 63 models -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("hcapH88_bld63Transcripts_transcript_sequences_RSRC", "Histoplasma capsulatum H88 transcripts from build 63 models"); } +metadata.dataset=Histoplasma capsulatum H88 transcripts from build 63 models +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("hcapH88_bld63Transcripts_transcript_sequences_RSRC", "Histoplasma capsulatum H88 transcripts from build 63 models"); } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} onClick.content={sequenceTitleFxn} diff --git a/Model/lib/jbrowse/lbraMHOMBR75M2904_2019/tracks.conf b/Model/lib/jbrowse/lbraMHOMBR75M2904_2019/tracks.conf index 7eaeee3e9..3111f4ba8 100644 --- a/Model/lib/jbrowse/lbraMHOMBR75M2904_2019/tracks.conf +++ b/Model/lib/jbrowse/lbraMHOMBR75M2904_2019/tracks.conf @@ -1,13 +1,10 @@ lbraMHOMBR75M2904_2019_maxicircle_gene_model_transcript_sequences_RSRC [tracks.lbraMHOMBR75M2904_2019_maxicircle_gene_model_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='lbraMHOMBR75M2904_2019_maxicircle_gene_model_transcript_sequences_RSRC' category=Gene Models key=Maxicircle Annotation -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=LbraziliensisMHOMBR75M2904_2019/alignedTranscripts/gff/lbraMHOMBR75M2904_2019_maxicircle_gene_model_transcript_sequences_RSRC/lbraMHOMBR75M2904_2019_maxicircle_gene_model_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/ldonLV9/tracks.conf b/Model/lib/jbrowse/ldonLV9/tracks.conf index 21953f209..f9b8afeb4 100644 --- a/Model/lib/jbrowse/ldonLV9/tracks.conf +++ b/Model/lib/jbrowse/ldonLV9/tracks.conf @@ -1,11 +1,8 @@ [tracks.ldonLV9_maxicircle_gene_model_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='ldonLV9_maxicircle_gene_model_transcript_sequences_RSRC' category=Gene Models key=Maxicircle Annotation -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=LdonovaniLV9/alignedTranscripts/gff/ldonLV9_maxicircle_gene_model_transcript_sequences_RSRC/ldonLV9_maxicircle_gene_model_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/rproCDC/tracks.conf b/Model/lib/jbrowse/rproCDC/tracks.conf index 677438161..3cb1759fd 100644 --- a/Model/lib/jbrowse/rproCDC/tracks.conf +++ b/Model/lib/jbrowse/rproCDC/tracks.conf @@ -1,11 +1,8 @@ [tracks.rproCDC_bld54Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='rproCDC_bld54Transcripts_transcript_sequences_RSRC' category=Gene Models key=Rhodnius prolixus CDC build 54 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=RprolixusCDC/alignedTranscripts/gff/rproCDC_bld54Transcripts_transcript_sequences_RSRC/rproCDC_bld54Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/ssalATCC50377/tracks.conf b/Model/lib/jbrowse/ssalATCC50377/tracks.conf index c872f3b9b..6ac99ff7d 100644 --- a/Model/lib/jbrowse/ssalATCC50377/tracks.conf +++ b/Model/lib/jbrowse/ssalATCC50377/tracks.conf @@ -1,11 +1,8 @@ [tracks.ssalATCC50377_bld60Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='ssalATCC50377_bld60Transcripts_transcript_sequences_RSRC' category=Gene Models key=S. salmonicida ATCC50377 transcripts from Release 60 -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=SsalmonicidaATCC50377/alignedTranscripts/gff/ssalATCC50377_bld60Transcripts_transcript_sequences_RSRC/ssalATCC50377_bld60Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/treeQM6a/tracks.conf b/Model/lib/jbrowse/treeQM6a/tracks.conf index 39cd309ac..611c613de 100644 --- a/Model/lib/jbrowse/treeQM6a/tracks.conf +++ b/Model/lib/jbrowse/treeQM6a/tracks.conf @@ -1,11 +1,8 @@ [tracks.treeQM6a_bld55Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='treeQM6a_bld55Transcripts_transcript_sequences_RSRC' category=Gene Models key=Trichoderma reesei QM6a build 55 models -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TreeseiQM6a/alignedTranscripts/gff/treeQM6a_bld55Transcripts_transcript_sequences_RSRC/treeQM6a_bld55Transcripts_transcript_sequences_RSRC.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey From f4998af22469941e90946440db5b44cd759fc5b7 Mon Sep 17 00:00:00 2001 From: rdemko2332 Date: Thu, 16 Apr 2026 16:56:30 -0400 Subject: [PATCH 31/64] Merging tempGeneProduct functionality with GeneaAttributes --- .../xml/tuningManager/apiTuningManager.xml | 146 +++++++++++++++++- 1 file changed, 144 insertions(+), 2 deletions(-) diff --git a/Model/lib/xml/tuningManager/apiTuningManager.xml b/Model/lib/xml/tuningManager/apiTuningManager.xml index 9d51e8fe0..99ca268f2 100644 --- a/Model/lib/xml/tuningManager/apiTuningManager.xml +++ b/Model/lib/xml/tuningManager/apiTuningManager.xml @@ -6,7 +6,10 @@ - + + + + From af7a6a0303832dba83dd77b5d30502cbeae1b978 Mon Sep 17 00:00:00 2001 From: rdemko2332 Date: Fri, 17 Apr 2026 14:52:44 -0400 Subject: [PATCH 32/64] Updating apiTuningManager to referencing new webready gene product functionality --- .../xml/tuningManager/apiTuningManager.xml | 152 +----------------- 1 file changed, 5 insertions(+), 147 deletions(-) diff --git a/Model/lib/xml/tuningManager/apiTuningManager.xml b/Model/lib/xml/tuningManager/apiTuningManager.xml index 99ca268f2..a9b7eb513 100644 --- a/Model/lib/xml/tuningManager/apiTuningManager.xml +++ b/Model/lib/xml/tuningManager/apiTuningManager.xml @@ -6,10 +6,7 @@ - - - - + From 8fd987fc4307d80f3febd14ea240264f4cc48cac Mon Sep 17 00:00:00 2001 From: rdemko2332 Date: Fri, 17 Apr 2026 15:04:11 -0400 Subject: [PATCH 33/64] Updating apiTuningManager. Incorporating new webready changes for transcriptattributes tuning table --- .../xml/tuningManager/apiTuningManager.xml | 20 +++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/Model/lib/xml/tuningManager/apiTuningManager.xml b/Model/lib/xml/tuningManager/apiTuningManager.xml index a9b7eb513..0f28fcdf7 100644 --- a/Model/lib/xml/tuningManager/apiTuningManager.xml +++ b/Model/lib/xml/tuningManager/apiTuningManager.xml @@ -46,8 +46,8 @@ - - + + From 56f87e5c7f7271b526b998b678663d9433835624 Mon Sep 17 00:00:00 2001 From: rdemko2332 Date: Fri, 17 Apr 2026 15:07:41 -0400 Subject: [PATCH 34/64] Removing unnecessary temp transcript attibutes table creation --- .../xml/tuningManager/apiTuningManager.xml | 353 ------------------ 1 file changed, 353 deletions(-) diff --git a/Model/lib/xml/tuningManager/apiTuningManager.xml b/Model/lib/xml/tuningManager/apiTuningManager.xml index 0f28fcdf7..db496c35a 100644 --- a/Model/lib/xml/tuningManager/apiTuningManager.xml +++ b/Model/lib/xml/tuningManager/apiTuningManager.xml @@ -275,359 +275,6 @@ - - - - Provides correct gene products using priority-based cascading logic: - Priority 1: Preferred Curated GeneFeatureProduct (is_preferred=1, Sanger|VEuPathDB|Apollo) - Priority 2: Any Curated GeneFeatureProduct (Sanger|VEuPathDB|Apollo) - Priority 3: 1:1 Gene:Transcript + Preferred Curated TranscriptProduct (is_preferred=1, Sanger|VEuPathDB|Apollo) - Priority 4: 1:1 Gene:Transcript + Any Curated TranscriptProduct (Sanger|VEuPathDB|Apollo) - Priority 5: ARBA GeneFeatureProduct - Priority 6: All GeneFeatureProduct (concatenated) - Priority 7: All TranscriptProduct (concatenated) - Priority 8: GeneFeature.product (base field) - This is a global table (all organisms) - source_id is globally unique. - - - - - - - - - - - - - - - - - - - - Provides correct transcript products using priority-based cascading logic: - Priority 1: 1:1 Gene:Transcript + Preferred Curated GeneFeatureProduct (is_preferred=1, Sanger|VEuPathDB|Apollo) - Priority 2: 1:1 Gene:Transcript + Any Curated GeneFeatureProduct (Sanger|VEuPathDB|Apollo) - Priority 3: Preferred Curated TranscriptProduct (is_preferred=1, Sanger|VEuPathDB|Apollo) - Priority 4: Any Curated TranscriptProduct (Sanger|VEuPathDB|Apollo) - Priority 5: 1:1 Gene:Transcript + All GeneFeatureProduct (concatenated) - Priority 6: All TranscriptProduct (concatenated) - Priority 7: 1:1 Gene:Transcript + GeneFeature.product - Priority 8: Transcript.product (base field) - This is a global table (all organisms) - source_id is globally unique. - - - - - - - - - - - - - - - - From 55834cf2b35b82b30f9645e87ed22cd075d14bed Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Mon, 20 Apr 2026 16:57:07 -0400 Subject: [PATCH 35/64] handle prealigned tracks that were using gff:processedTranscript --- .../jbrowse/afunidAnoFuneDA416_04/tracks.conf | 17 ++- Model/lib/jbrowse/agamIfakara/tracks.conf | 24 ++-- Model/lib/jbrowse/iscaPalLabHiFi/tracks.conf | 19 ++- Model/lib/jbrowse/llonM1/tracks.conf | 17 ++- Model/lib/jbrowse/ppapM1/tracks.conf | 17 ++- Model/lib/jbrowse/tgonME49/tracks.conf | 136 +++++++++++------- 6 files changed, 141 insertions(+), 89 deletions(-) diff --git a/Model/lib/jbrowse/afunidAnoFuneDA416_04/tracks.conf b/Model/lib/jbrowse/afunidAnoFuneDA416_04/tracks.conf index 3fa9b3fc1..5c85536bd 100644 --- a/Model/lib/jbrowse/afunidAnoFuneDA416_04/tracks.conf +++ b/Model/lib/jbrowse/afunidAnoFuneDA416_04/tracks.conf @@ -1,19 +1,22 @@ [tracks.afunidAnoFuneDA416_04_FUMOZ_liftoff_phase_corrected_GFF_RSRC] -query.feature=gff:processedTranscript -query.edName='afunidAnoFuneDA416_04_FUMOZ_liftoff_phase_corrected_GFF_RSRC' category=Gene Models metadata.subcategory=Transcripts metadata.trackType=Processed Transcript -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=AfunestusAfunGA1/prealigned/gff/afunidAnoFuneDA416_04_FUMOZ_liftoff_phase_corrected_WebService_RSRC/afunidAnoFuneDA416_04_FUMOZ_liftoff_phase_corrected.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={liftoffTranscriptColor} style.borderColor={processedTranscriptBorderColor} style.utrColor=grey -baseUrl=/a/service/jbrowse -#glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -type=NeatCanvasFeatures/View/Track/NeatFeatures +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 key=Liftoff Gene models of FUMOZ to AfunGA1 -unsafePopup="JSON::true" onClick.content={liftoffGeneDetails} metadata.dataset= fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("afunidAnoFuneDA416_04_FUMOZ_liftoff_phase_corrected_GFF_RSRC", "Liftoff Gene models of FUMOZ to AfunGA1"); } diff --git a/Model/lib/jbrowse/agamIfakara/tracks.conf b/Model/lib/jbrowse/agamIfakara/tracks.conf index fae7726e5..b36b527de 100644 --- a/Model/lib/jbrowse/agamIfakara/tracks.conf +++ b/Model/lib/jbrowse/agamIfakara/tracks.conf @@ -1,22 +1,24 @@ [tracks.agamIfakara_GCAv1_to_GCFv2_GFF_RSRC] -query.feature=gff:processedTranscript -query.edName='agamIfakara_GCAv1_to_GCFv2_GFF_RSRC' category=Gene Models -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript +key=Annotation produced by the Ensembl genebuild +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=AgambiaeIfakara/prealigned/gff/agamIfakara_GCAv1_to_GCFv2_WebService_RSRC/agamIfakara_GCAv1_to_GCFv2.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} -key=Annotation produced by the Ensembl genebuild metadata.subcategory=Transcripts metadata.trackType=Processed Transcript -metadata.description=${summary} -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("${datasetName}", "${datasetDisplayName}"); } metadata.description=Annotation produced by the Ensembl genebuild +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("${datasetName}", "${datasetDisplayName}"); } fmtMetaValue_Description=function() { return datasetDescription("Annotation was produced by the Ensembl genebuild","")} -onClick.content={DatasetFeatureTitleFxn} -menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} diff --git a/Model/lib/jbrowse/iscaPalLabHiFi/tracks.conf b/Model/lib/jbrowse/iscaPalLabHiFi/tracks.conf index af592ee85..a24942a5b 100644 --- a/Model/lib/jbrowse/iscaPalLabHiFi/tracks.conf +++ b/Model/lib/jbrowse/iscaPalLabHiFi/tracks.conf @@ -1,14 +1,19 @@ [tracks.iscaPalLabHiFi_WickelAnnotation2Palhifi_GFF_RSRC] -query.feature=gff:processedTranscript -query.edName='iscaPalLabHiFi_WickelAnnotation2Palhifi_GFF_RSRC' category=Gene Models key=Gene models of I. scapularis Wickel -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=IscapularisPalLabHiFi/prealigned/gff/iscaPalLabHiFi_WickelAnnotation2Palhifi_WebService_RSRC/iscaPalLabHiFi_WickelAnnotation2Palhifi.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} metadata.subcategory=Transcripts diff --git a/Model/lib/jbrowse/llonM1/tracks.conf b/Model/lib/jbrowse/llonM1/tracks.conf index 633597690..6da6ca2bc 100644 --- a/Model/lib/jbrowse/llonM1/tracks.conf +++ b/Model/lib/jbrowse/llonM1/tracks.conf @@ -1,19 +1,22 @@ [tracks.llonM1_LlonJ16_liftoff_phase_corrected_GFF_RSRC] -query.feature=gff:processedTranscript -query.edName='llonM1_LlonJ1.6_liftoff_phase_corrected_GFF_RSRC' category=Gene Models metadata.subcategory=Transcripts metadata.trackType=Processed Transcript -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=LlongipalpisM1/prealigned/gff/llonM1_LlonJ1.6_liftoff_phase_corrected_WebService_RSRC/llonM1_LlonJ1.6_liftoff_phase_corrected.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={liftoffTranscriptColor} style.borderColor={processedTranscriptBorderColor} style.utrColor=grey -baseUrl=/a/service/jbrowse -#glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -type=NeatCanvasFeatures/View/Track/NeatFeatures +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 key=Liftoff Gene models of LlonJ1.6 to llonM1 -unsafePopup="JSON::true" onClick.content={liftoffGeneDetails} metadata.dataset= fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("llonM1_LlonJ1.6_liftoff_phase_corrected_GFF_RSRC", "Liftoff Gene models of LlonJ1.6 to llonM1"); } diff --git a/Model/lib/jbrowse/ppapM1/tracks.conf b/Model/lib/jbrowse/ppapM1/tracks.conf index 50f2f35ac..65a883cb7 100644 --- a/Model/lib/jbrowse/ppapM1/tracks.conf +++ b/Model/lib/jbrowse/ppapM1/tracks.conf @@ -1,19 +1,22 @@ [tracks.ppapM1_PpapI16_liftoff_phase_corrected_GFF_RSRC] -query.feature=gff:processedTranscript -query.edName='ppapM1_PpapI1.6_liftoff_phase_corrected_GFF_RSRC' category=Gene Models metadata.subcategory=Transcripts metadata.trackType=Processed Transcript -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=PpapatasiM1/prealigned/gff/ppapM1_PpapI1.6_liftoff_phase_corrected_WebService_RSRC/ppapM1_PpapI1.6_liftoff_phase_corrected.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={liftoffTranscriptColor} style.borderColor={processedTranscriptBorderColor} style.utrColor=grey -baseUrl=/a/service/jbrowse -#glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -type=NeatCanvasFeatures/View/Track/NeatFeatures +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 key=Liftoff Gene models of PpapI1.6 to ppapM1 -unsafePopup="JSON::true" onClick.content={liftoffGeneDetails} metadata.dataset= fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("ppapM1_PpapI1.6_liftoff_phase_corrected_GFF_RSRC", "Liftoff Gene models of PpapI1.6 to ppapM1"); } diff --git a/Model/lib/jbrowse/tgonME49/tracks.conf b/Model/lib/jbrowse/tgonME49/tracks.conf index 08532748c..376b5c4c0 100644 --- a/Model/lib/jbrowse/tgonME49/tracks.conf +++ b/Model/lib/jbrowse/tgonME49/tracks.conf @@ -270,97 +270,128 @@ style.neg_color=red style.height=40 [tracks.denovo_union] -query.feature=gff:processedTranscript -query.edName='tgonME49_me49.denovo.craig_GFF_topLevel_RSRC' category=Gene Models key=CRAIG denovo Gene Model Prediction -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_me49.denovo.craig_WebService_RSRC/tgonME49_me49.denovo.craig.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript [tracks.utr_only_union] -query.feature=gff:processedTranscript -query.edName='tgonME49_unionized_cds_GFF_topLevel_RSRC' category=Gene Models key=Annotated Transcripts w/ CRAIG UTR Prediction -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_unionized_cds_WebService_RSRC/tgonME49_unionized_cds.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript [tracks.utr_only_scores] -query.feature=gff:processedTranscript -query.edName='tgonME49_predictions_utr_scores_GFF_topLevel_RSRC' category=Gene Models key=Annotated Transcripts w/ CRAIG UTR Prediction (highest score) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_predictions_utr_scores_WebService_RSRC/tgonME49_predictions_utr_scores.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript [tracks.utr_only_lengths] -query.feature=gff:processedTranscript -query.edName='tgonME49_predictions_utr_lengths_GFF_topLevel_RSRC' category=Gene Models key=Annotated Transcripts w/ CRAIG UTR Prediction (longest) -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_predictions_utr_lengths_WebService_RSRC/tgonME49_predictions_utr_lengths.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript [tracks.craig12SamplesUtrOnly] -query.feature=gff:processedTranscript -query.edName='tgonME49_craig_UTR_GFF_topLevel_RSRC' category=Gene Models key=Annotated Transcripts w/ CRAIG UTR Predictions from 12 samples -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_craig_UTR_WebService_RSRC/tgonME49_craig_UTR.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript [tracks.craig12SamplesDeNovo] -query.feature=gff:processedTranscript -query.edName='tgonME49_craig_denovo_GFF_topLevel_RSRC' category=Gene Models key=CRAIG De Novo Predictions from 12 samples -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_craig_denovo_WebService_RSRC/tgonME49_craig_denovo.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 onClick.content={gffGeneFeatureTitleFxn} +menuTemplate+=json:{"label": "View Details", "content": "{gffGeneFeatureTitleFxn}"} metadata.subcategory=Transcripts metadata.trackType=Processed Transcript @@ -598,17 +629,22 @@ onClick.content={sequenceTitleFxn} [tracks.tgonME49_bld65Annotation_GFF_topLevel_RSRC] -query.feature=gff:processedTranscript -query.edName='tgonME49_bld65Annotation_GFF_topLevel_RSRC' category=Gene Models key=T.gondii ME49 transcripts from Release 65 -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_bld65Annotation_WebService_RSRC/tgonME49_bld65Annotation.gff.gz +type=NeatCanvasFeatures/View/Track/NeatFeatures +glyph=NeatCanvasFeatures/View/FeatureGlyph/Gene +transcriptType={geneTranscriptType} +noncodingType=nc_transcript +labelTranscripts=false +unsafePopup="JSON::true" style.color={alternateTranscriptColor} -onClick.content={gffGeneFeatureTitleFxn} +style.borderColor={processedTranscriptBorderColor} +style.utrColor=grey +style.topLevelFeaturesPercent=10 +style.labelScale=0.01 +onClick.content=function(track, feature){ var c = track.browser.config; return c.gffGeneFeatureTitleFxn(track,feature) } metadata.subcategory=Transcripts metadata.trackType=Processed Transcript From 2d13caeb667efc6b3f63ba9530b061982d1cb1e6 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Tue, 21 Apr 2026 11:37:22 -0400 Subject: [PATCH 36/64] fix onClick text for prealigned tracks --- Model/lib/jbrowse/functions.conf | 79 +++++++++++++++++++++++++++----- 1 file changed, 67 insertions(+), 12 deletions(-) diff --git a/Model/lib/jbrowse/functions.conf b/Model/lib/jbrowse/functions.conf index 25209aadf..298c98ced 100644 --- a/Model/lib/jbrowse/functions.conf +++ b/Model/lib/jbrowse/functions.conf @@ -819,6 +819,73 @@ gffGeneFeatureTitleFxn = function(track, feature) { var c = track.browser.config; return c.gffGeneFeatureTitle(track,feature) } +gffGeneFeatureTitle = function(track, feature) { + var c = track.browser.config; + var rows = new Array(); + var subfeatures = feature.get("subfeatures") || []; + var mrnas = subfeatures.filter(function(sf) { + var t = sf.get("type"); + return t === "mRNA" || t === "transcript"; + }); + var transcripts = mrnas.length > 0 ? mrnas : [feature]; + transcripts.forEach(function(mRNA) { + var transcriptId = mRNA.get("name"); + var strand = mRNA.get("strand"); + var totScore = mRNA.get("score"); + var five_sample = mRNA.get("fiveutr_sample"); + var five_score = mRNA.get("fiveutr_score"); + var three_sample = mRNA.get("threeutr_sample"); + var three_score = mRNA.get("threeutr_score"); + var sfs = mRNA.get("subfeatures") || []; + var cdsSfs = sfs.filter(function(sf) { return sf.get("type") === "CDS"; }); + var fiveUtrSfs = sfs.filter(function(sf) { return sf.get("type") === "five_prime_UTR"; }); + var threeUtrSfs = sfs.filter(function(sf) { return sf.get("type") === "three_prime_UTR"; }); + cdsSfs = cdsSfs.sort(function(a,b){ return a.get("start") - b.get("start"); }); + fiveUtrSfs = fiveUtrSfs.sort(function(a,b){ return a.get("start") - b.get("start"); }); + threeUtrSfs = threeUtrSfs.sort(function(a,b){ return a.get("start") - b.get("start"); }); + var cdsStrings, fiveUtrStrings, threeUtrStrings; + if (strand == '-1') { + cdsSfs.reverse(); + fiveUtrSfs.reverse(); + threeUtrSfs.reverse(); + cdsStrings = cdsSfs.map(function(x) { return 'complement(' + x.get("end") + '..' + (x.get("start")+1) + ')'; }); + fiveUtrStrings = fiveUtrSfs.map(function(x) { return 'complement(' + x.get("end") + '..' + (x.get("start")+1) + ')'; }); + threeUtrStrings = threeUtrSfs.map(function(x) { return 'complement(' + x.get("end") + '..' + (x.get("start")+1) + ')'; }); + } else { + cdsStrings = cdsSfs.map(function(x) { return (x.get("start")+1) + '..' + x.get("end"); }); + fiveUtrStrings = fiveUtrSfs.map(function(x) { return (x.get("start")+1) + '..' + x.get("end"); }); + threeUtrStrings = threeUtrSfs.map(function(x) { return (x.get("start")+1) + '..' + x.get("end"); }); + } + if (transcriptId != null) { + rows.push(c.twoColRow('ID:', transcriptId)); + } + if (totScore != null && totScore != 'NaN') { + rows.push(c.twoColRow('Score:', totScore)); + } + if (fiveUtrStrings.length > 0) { + rows.push(c.twoColRowVAlign('5\' UTR:', fiveUtrStrings.join("
"), 'top')); + } + if (cdsStrings.length > 0) { + rows.push(c.twoColRowVAlign('CDS:', cdsStrings.join("
"), 'top')); + } + if (threeUtrStrings.length > 0) { + rows.push(c.twoColRowVAlign('3\' UTR:', threeUtrStrings.join("
"), 'top')); + } + if (five_sample != null) { + rows.push(c.twoColRow('5\' UTR Samples:', five_sample)); + } + if (five_score != null) { + rows.push(c.twoColRow('5\' UTR Scores:', five_score)); + } + if (three_sample != null) { + rows.push(c.twoColRow('3\' UTR Samples:', three_sample)); + } + if (three_score != null) { + rows.push(c.twoColRow('3\' UTR Scores:', three_score)); + } + }); + return c.table(rows); + } microsatelliteTitleFxn = function(track, feature, featDiv) { var c = track.browser.config; return c.microsatelliteTitle(track, feature, featDiv); @@ -1732,18 +1799,6 @@ gene_title_gff = function(tip, sourceId, fiveUtr, cdss, threeUtr, totScore, five }; return c.table(rows); } -gffGeneFeatureTitle = function(track, feature) { - var c = track.browser.config; - var sourceId = feature.get("name"); - var strand = feature.get("strand"); - var model = c.orientAndGetUtrsAndCDS(strand, feature.get("subfeatures"), track); - var five_sample = feature.get("fiveutr_sample"); - var five_score = feature.get("fiveutr_score"); - var three_sample = feature.get("threeutr_sample"); - var three_score = feature.get("threeutr_score"); - var totScore = feature.get("score"); - return c.gene_title_gff(this, sourceId, model[0].join("
"), model[1].join("
"), model[2].join("
"), totScore, five_sample, five_score, three_sample, three_score, track); - } orientAndGetUtrsAndCDSnew = function(strand, feature, track) { var exons = feature.get("subfeatures"); var c = track.browser.config; From 85ab5087d17bb83b32fbea2dd21057b9f5cdd1f8 Mon Sep 17 00:00:00 2001 From: rdemko2332 Date: Thu, 5 Mar 2026 16:04:59 -0500 Subject: [PATCH 37/64] Improving speed of creation of proteinsequencegroup --- .../lib/psql/webready/comparative/ProteinSequenceGroup.psql | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/Model/lib/psql/webready/comparative/ProteinSequenceGroup.psql b/Model/lib/psql/webready/comparative/ProteinSequenceGroup.psql index de2df5a82..6288c1b92 100644 --- a/Model/lib/psql/webready/comparative/ProteinSequenceGroup.psql +++ b/Model/lib/psql/webready/comparative/ProteinSequenceGroup.psql @@ -1,6 +1,6 @@ create table :SCHEMA.ProteinSequenceGroup as SELECT - distinct(aas.source_id) AS full_id, + aas.source_id AS full_id, aas.source_id, aas.aa_sequence_id, length(aas.sequence) as length, @@ -63,7 +63,7 @@ ) taxon, ( - SELECT aas.aa_sequence_id, + SELECT DISTINCT ON (aas.aa_sequence_id) aas.aa_sequence_id, CASE WHEN ores.resource_name IN ('AmoebaDB','CryptoDB','FungiDB','GiardiaDB','HostDB','MicrosporidiaDB', 'PlasmoDB','PiroplasmaDB','ToxoDB','TrichDB','TriTrypDB','VectorBase') @@ -84,7 +84,6 @@ AND ogseq.group_id = o.group_id AND aas.aa_sequence_id = urls.aa_sequence_id AND taxon.orthomcl_taxon_id = aas.taxon_id - AND aas.taxon_id in (select distinct(eas.taxon_id) from apidb.organism og, dots.aasequence eas where eas.taxon_id = og.taxon_id) ; alter table :SCHEMA.ProteinSequenceGroup From 7e30a6b9df6d8cceb5713cc1516f97720deab8c5 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Tue, 21 Apr 2026 15:17:14 -0400 Subject: [PATCH 38/64] add sub addTransposableElements --- .../TransposableElements.pm | 51 +++++++++++++++++++ Model/lib/perl/JbrowseOrgSpecificNaTracks.pm | 20 +++++++- 2 files changed, 70 insertions(+), 1 deletion(-) create mode 100644 Model/lib/perl/JBrowseTrackConfig/TransposableElements.pm diff --git a/Model/lib/perl/JBrowseTrackConfig/TransposableElements.pm b/Model/lib/perl/JBrowseTrackConfig/TransposableElements.pm new file mode 100644 index 000000000..42db295d5 --- /dev/null +++ b/Model/lib/perl/JBrowseTrackConfig/TransposableElements.pm @@ -0,0 +1,51 @@ +package ApiCommonModel::Model::JBrowseTrackConfig::TransposableElements; +use base qw(ApiCommonModel::Model::JBrowseTrackConfig::Segments); +use strict; +use warnings; + +use ApiCommonModel::Model::JBrowseTrackConfig::GFFStore; + +sub new { + my ($class, $args) = @_; + my $self = $class->SUPER::new($args); + + my $datasetConfig = $self->getDatasetConfigObj(); + $datasetConfig->setCategory("Sequence Analysis"); + $datasetConfig->setSubcategory("Sequence sites, features and motifs"); + + $self->setId("Transposable Elements"); + $self->setLabel("Transposable Elements"); + + my $store; + + if($self->getApplicationType() eq 'jbrowse' || $self->getApplicationType() eq 'apollo') { + $store = ApiCommonModel::Model::JBrowseTrackConfig::GFFStore->new($args); + } + else { + $store = ApiCommonModel::Model::JBrowseTrackConfig::GFFStore->new($args); + } + + $self->setStore($store); + + $self->setColor("goldenrod"); + + my $detailsFunction = "{transposableElementDetailsFxn}"; + $self->setOnClickContent($detailsFunction); + $self->setViewDetailsContent($detailsFunction); + + return $self; +} + + +# TODO: +sub getJBrowse2Object{ + my $self = shift; + + my $jbrowse2Object = $self->SUPER::getJBrowse2Object(); + + + return $jbrowse2Object; +} + + +1; diff --git a/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm b/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm index 1f3eca7fc..8dfdd59e0 100644 --- a/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm +++ b/Model/lib/perl/JbrowseOrgSpecificNaTracks.pm @@ -24,6 +24,7 @@ use ApiCommonModel::Model::JBrowseTrackConfig::SyntenyTrackConfig; use ApiCommonModel::Model::JBrowseTrackConfig::LongReadRNASeqTrackConfig; use ApiCommonModel::Model::JBrowseTrackConfig::AntiSmashTrackConfig; use ApiCommonModel::Model::JBrowseTrackConfig::LowComplexityTrackConfig; +use ApiCommonModel::Model::JBrowseTrackConfig::TransposableElements; use ApiCommonModel::Model::JBrowseTrackConfig::TandemRepeatsTrackConfig; use ApiCommonModel::Model::JBrowseTrackConfig::EstTrackConfig; use ApiCommonModel::Model::JBrowseTrackConfig::OrfTrackConfig; @@ -56,6 +57,7 @@ sub processOrganism { &addReferenceSequence($applicationType, $result, $nameForFileNames, $projectName, $buildNumber); &addScaffolds($datasetProps, $applicationType, $result, $nameForFileNames, $projectName, $buildNumber); &addCentromere($datasetProps, $applicationType, $result, $nameForFileNames, $projectName, $buildNumber); + &addTransposableElements($datasetProps, $applicationType, $result, $nameForFileNames, $projectName, $buildNumber); &addUnifiedMassSpec($datasetProps, $applicationType, $result, $nameForFileNames, $projectName, $buildNumber); &addUnifiedSnp($datasetProps, $applicationType, $result); @@ -498,11 +500,27 @@ sub addCentromere { } +sub addTransposableElements { + my ($datasetProps, $applicationType, $result, $nameForFileNames, $projectName, $buildNumber) = @_; + my $hasTransposableElements = $datasetProps->{hasTransposableElements} ? $datasetProps->{hasTransposableElements} : 0; + if($hasTransposableElements == 1) { + my $relativePathToGffFile = "${nameForFileNames}/genomeBrowser/gff/transposableElements.gff.gz"; + my $track = ApiCommonModel::Model::JBrowseTrackConfig::TransposableElements->new({ + project_name => $projectName, + build_number => $buildNumber, + relative_path_to_file => $relativePathToGffFile, + application_type => $applicationType, + })->getConfigurationObject(); + push @{$result->{tracks}}, $track; + } +} + + sub addScaffolds { my ($datasetProps, $applicationType, $result, $nameForFileNames, $projectName, $buildNumber) = @_; my $hasScaffold = $datasetProps->{hasScaffoldGenome} ? $datasetProps->{hasScaffoldGenome} : 0; if($hasScaffold == 1) { - my $relativePathToGffFile = "${nameForFileNames}/genomeBrowser/gff/scaffolds.gff.gz"; + my $relativePathToGffFile = "${nameForFileNames}/genomeBrowser/gff/scaffoldGenome.gff.gz"; my $track = ApiCommonModel::Model::JBrowseTrackConfig::ScaffoldsTrackConfig->new({ application_type => $applicationType, project_name => $projectName, From 99e6221e9f7bc73b46686366fdaad4ef722556f3 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Tue, 21 Apr 2026 15:18:06 -0400 Subject: [PATCH 39/64] add transposableElementDetailsFxn --- Model/lib/jbrowse/functions.conf | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/Model/lib/jbrowse/functions.conf b/Model/lib/jbrowse/functions.conf index 298c98ced..c39a2d3c8 100644 --- a/Model/lib/jbrowse/functions.conf +++ b/Model/lib/jbrowse/functions.conf @@ -779,6 +779,15 @@ lowComplexityDetailsFxn = function(track, feature, featureDiv) { var c = track.browser.config; return c.positionAndSequence(track, feature, featureDiv); } +transposableElementDetailsFxn = function(track, feature, featureDiv) { + var c = track.browser.config; + var rows = new Array(); + rows.push(c.twoColRow('Transposable Element:', feature.get('id'))); + rows.push(c.twoColRow('Name:', feature.get('te_name'))); + rows.push(c.twoColRow('Size:', feature.get('alignLength'))); + rows.push(c.twoColRow('Position:', feature.get('sequence_id') + ':' + (feature.get('start') + 1) + '..' + feature.get('end'))); + return c.table(rows); + } snpTitleFxn = function(track, feature, featureDiv) { var c = track.browser.config; return c.snpTitle(track, feature, featureDiv); From 398fd05cc8a94bfde97b6dbb172f78b5c4e60a6a Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Tue, 21 Apr 2026 15:19:04 -0400 Subject: [PATCH 40/64] remove unneeded files/dirs, as tracks are injected --- Model/lib/jbrowse/tvagG3/tracks.conf | 14 -------------- Model/lib/jbrowse/tvagG32022/tracks.conf | 20 -------------------- 2 files changed, 34 deletions(-) delete mode 100644 Model/lib/jbrowse/tvagG3/tracks.conf delete mode 100644 Model/lib/jbrowse/tvagG32022/tracks.conf diff --git a/Model/lib/jbrowse/tvagG3/tracks.conf b/Model/lib/jbrowse/tvagG3/tracks.conf deleted file mode 100644 index 0f04ad18b..000000000 --- a/Model/lib/jbrowse/tvagG3/tracks.conf +++ /dev/null @@ -1,14 +0,0 @@ -[tracks.TransposableElements] -query.feature=alignment:TransposableElements -category=Sequence Analysis -metadata.subcategory=Sequence sites, features and motifs -key=Transposable Elements -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/Box -metadata.trackType=Segments -displayMode=normal -style.color=black -# style.strandArrow=false -onClick.content={transposonFxn} diff --git a/Model/lib/jbrowse/tvagG32022/tracks.conf b/Model/lib/jbrowse/tvagG32022/tracks.conf deleted file mode 100644 index dbdc6beb3..000000000 --- a/Model/lib/jbrowse/tvagG32022/tracks.conf +++ /dev/null @@ -1,20 +0,0 @@ -[tracks.MobileElementFeatures] -query.feature=gff:basic -query.edName='tvagG32022_TE_GFF_RSRC' -category=Sequence Analysis -metadata.subcategory=Sequence sites, features and motifs -key=Transposable Elements -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/Box -metadata.trackType=Segments -displayMode=normal -style.color=black -style.strandArrow=false -#onClick.content={transposonFxn} -#metadata.dataset=Fitness during the T. gondii lytic cycle. (Genome-Wide CRISPR Screen) -#fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("tgonGT1_CrisprScreen_GFF_topLevel_RSRC", "Fitness during the T. gondii lytic cycle. (Genome-Wide CRISPR Screen)"); } - - - From cfea91e6cb30d3248021a1fbf32f5b3e0797f2ad Mon Sep 17 00:00:00 2001 From: steve-fischer-200 Date: Tue, 21 Apr 2026 17:43:23 -0400 Subject: [PATCH 41/64] improve compound MassSpecGraph query performance --- Model/lib/wdk/model/records/compoundTableQueries.xml | 2 +- Model/lib/xml/tuningManager/apiTuningManager.xml | 8 ++++++++ 2 files changed, 9 insertions(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/records/compoundTableQueries.xml b/Model/lib/wdk/model/records/compoundTableQueries.xml index 9df8447e9..a68696b2e 100644 --- a/Model/lib/wdk/model/records/compoundTableQueries.xml +++ b/Model/lib/wdk/model/records/compoundTableQueries.xml @@ -249,7 +249,7 @@ FROM webready.CompoundAttributes ca LEFT JOIN ( SELECT DISTINCT - substring(p.source_id FROM '^CHEBI:\d+') AS chebi_id, + p.source_id AS chebi_id, cpgd.* FROM ( SELECT '' AS dataset_name, '' AS module, '' AS x_axis, '' AS y_axis, '' AS is_graph_custom, 1 AS order_number diff --git a/Model/lib/xml/tuningManager/apiTuningManager.xml b/Model/lib/xml/tuningManager/apiTuningManager.xml index db496c35a..7bcc493af 100644 --- a/Model/lib/xml/tuningManager/apiTuningManager.xml +++ b/Model/lib/xml/tuningManager/apiTuningManager.xml @@ -2289,6 +2289,14 @@ create index Organism_projectId_idx&1 ON OrganismAttributes&1 (project_id, sourc ]]> + + + + Date: Wed, 22 Apr 2026 11:02:35 -0400 Subject: [PATCH 42/64] Adding new rules for preferred products --- .../webready/orgSpecific/GeneProduct_p.psql | 62 ++++++++++++------- .../orgSpecific/TranscriptProduct_p.psql | 50 ++++++++++++--- 2 files changed, 81 insertions(+), 31 deletions(-) diff --git a/Model/lib/psql/webready/orgSpecific/GeneProduct_p.psql b/Model/lib/psql/webready/orgSpecific/GeneProduct_p.psql index 21f94fba3..18a2a1c39 100644 --- a/Model/lib/psql/webready/orgSpecific/GeneProduct_p.psql +++ b/Model/lib/psql/webready/orgSpecific/GeneProduct_p.psql @@ -97,12 +97,43 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp as GROUP BY gf.source_id ), - -- Priority 6: All gene products (concatenated) - gene_all AS ( + -- Priority 6: Preferred gene products (is_preferred=1, concatenated) + gene_preferred_all AS ( SELECT gf.source_id, SUBSTR(STRING_AGG(DISTINCT gfp.product, ', ' ORDER BY gfp.product), 1, 4000) as product, 6 as source_rule, COUNT(DISTINCT gfp.product) as value_count, + 'preferred_gene' as rule_description + FROM :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp gf + INNER JOIN apidb.GeneFeatureProduct gfp ON gfp.na_feature_id = gf.na_feature_id + WHERE gfp.is_preferred = 1 + AND gfp.product IS NOT NULL + AND gfp.product != 'hypothetical protein' + GROUP BY gf.source_id + ), + + -- Priority 7: Preferred transcript products (is_preferred=1, concatenated) + transcript_preferred_all AS ( + SELECT gf.source_id, + SUBSTR(STRING_AGG(DISTINCT tp.product, ', ' ORDER BY tp.product), 1, 4000) as product, + 7 as source_rule, + COUNT(DISTINCT tp.product) as value_count, + 'preferred_transcript' as rule_description + FROM :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp gf + INNER JOIN dots.Transcript t ON t.parent_id = gf.na_feature_id + INNER JOIN apidb.TranscriptProduct tp ON tp.na_feature_id = t.na_feature_id + WHERE tp.is_preferred = 1 + AND tp.product IS NOT NULL + AND tp.product != 'hypothetical protein' + GROUP BY gf.source_id + ), + + -- Priority 8: All gene products (concatenated) + gene_all AS ( + SELECT gf.source_id, + SUBSTR(STRING_AGG(DISTINCT gfp.product, ', ' ORDER BY gfp.product), 1, 4000) as product, + 8 as source_rule, + COUNT(DISTINCT gfp.product) as value_count, 'all_gene' as rule_description FROM :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp gf INNER JOIN apidb.GeneFeatureProduct gfp ON gfp.na_feature_id = gf.na_feature_id @@ -111,11 +142,11 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp as GROUP BY gf.source_id ), - -- Priority 7: All transcript products (concatenated) + -- Priority 9: All transcript products (concatenated) transcript_all AS ( SELECT gf.source_id, SUBSTR(STRING_AGG(DISTINCT tp.product, ', ' ORDER BY tp.product), 1, 4000) as product, - 7 as source_rule, + 9 as source_rule, COUNT(DISTINCT tp.product) as value_count, 'all_transcript' as rule_description FROM :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp gf @@ -126,31 +157,17 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp as GROUP BY gf.source_id ), - -- Priority 8: Base gene product field + -- Priority 10: Base gene product field gene_base AS ( SELECT gf.source_id, gf.product, - 8 as source_rule, + 10 as source_rule, 1 as value_count, 'base_gene' as rule_description FROM :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp gf WHERE gf.product IS NOT NULL ), - -- Priority 9: Base transcript product field (concatenated) - transcript_base AS ( - SELECT gf.source_id, - SUBSTR(STRING_AGG(DISTINCT t.product, ', ' ORDER BY t.product), 1, 4000) as product, - 9 as source_rule, - COUNT(DISTINCT t.product) as value_count, - 'base_transcript' as rule_description - FROM :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp gf - INNER JOIN dots.Transcript t ON t.parent_id = gf.na_feature_id - WHERE t.product IS NOT NULL - AND t.product != 'hypothetical protein' - GROUP BY gf.source_id - ), - -- Combine all priorities all_products AS ( SELECT * FROM gene_curated_preferred @@ -158,10 +175,11 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp as UNION ALL SELECT * FROM transcript_curated_preferred_one_to_one UNION ALL SELECT * FROM transcript_curated_any_one_to_one UNION ALL SELECT * FROM gene_arba + UNION ALL SELECT * FROM gene_preferred_all + UNION ALL SELECT * FROM transcript_preferred_all UNION ALL SELECT * FROM gene_all UNION ALL SELECT * FROM transcript_all UNION ALL SELECT * FROM gene_base - UNION ALL SELECT * FROM transcript_base ), -- Select highest priority product per gene @@ -173,7 +191,7 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVGeneFeatureProductTmp as SELECT gf.source_id, COALESCE(rp.product, 'unspecified product') as product, COALESCE(rp.value_count, 0) as value_count, - COALESCE(rp.source_rule, 10) as source_rule, + COALESCE(rp.source_rule, 11) as source_rule, COALESCE(rp.rule_description, 'unspecified') as source_rule_description, ':PROJECT_ID' as project_id, ':ORG_ABBREV' as org_abbrev, diff --git a/Model/lib/psql/webready/orgSpecific/TranscriptProduct_p.psql b/Model/lib/psql/webready/orgSpecific/TranscriptProduct_p.psql index 1100910fc..63ccffe72 100644 --- a/Model/lib/psql/webready/orgSpecific/TranscriptProduct_p.psql +++ b/Model/lib/psql/webready/orgSpecific/TranscriptProduct_p.psql @@ -92,12 +92,42 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp as GROUP BY t.source_id ), - -- Priority 5: 1:1 + All gene products (concatenated) - gene_all_one_to_one AS ( + -- Priority 5: 1:1 + Preferred gene products (is_preferred=1, concatenated) + gene_preferred_one_to_one AS ( SELECT oto.transcript_source_id as source_id, SUBSTR(STRING_AGG(DISTINCT gfp.product, ', ' ORDER BY gfp.product), 1, 4000) as product, 5 as source_rule, COUNT(DISTINCT gfp.product) as value_count, + 'preferred_gene_1to1' as rule_description + FROM one_to_one_transcripts oto + INNER JOIN apidb.GeneFeatureProduct gfp ON gfp.na_feature_id = oto.gene_na_feature_id + WHERE gfp.is_preferred = 1 + AND gfp.product IS NOT NULL + AND gfp.product != 'hypothetical protein' + GROUP BY oto.transcript_source_id + ), + + -- Priority 6: Preferred transcript products (is_preferred=1, concatenated) + transcript_preferred_all AS ( + SELECT t.source_id, + SUBSTR(STRING_AGG(DISTINCT tp.product, ', ' ORDER BY tp.product), 1, 4000) as product, + 6 as source_rule, + COUNT(DISTINCT tp.product) as value_count, + 'preferred_transcript' as rule_description + FROM :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp t + INNER JOIN apidb.TranscriptProduct tp ON tp.na_feature_id = t.na_feature_id + WHERE tp.is_preferred = 1 + AND tp.product IS NOT NULL + AND tp.product != 'hypothetical protein' + GROUP BY t.source_id + ), + + -- Priority 7: 1:1 + All gene products (concatenated) + gene_all_one_to_one AS ( + SELECT oto.transcript_source_id as source_id, + SUBSTR(STRING_AGG(DISTINCT gfp.product, ', ' ORDER BY gfp.product), 1, 4000) as product, + 7 as source_rule, + COUNT(DISTINCT gfp.product) as value_count, 'all_gene_1to1' as rule_description FROM one_to_one_transcripts oto INNER JOIN apidb.GeneFeatureProduct gfp ON gfp.na_feature_id = oto.gene_na_feature_id @@ -106,11 +136,11 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp as GROUP BY oto.transcript_source_id ), - -- Priority 6: All transcript products (concatenated) + -- Priority 8: All transcript products (concatenated) transcript_all AS ( SELECT t.source_id, SUBSTR(STRING_AGG(DISTINCT tp.product, ', ' ORDER BY tp.product), 1, 4000) as product, - 6 as source_rule, + 8 as source_rule, COUNT(DISTINCT tp.product) as value_count, 'all_transcript' as rule_description FROM :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp t @@ -120,11 +150,11 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp as GROUP BY t.source_id ), - -- Priority 7: 1:1 + Base gene product field + -- Priority 9: 1:1 + Base gene product field gene_base_one_to_one AS ( SELECT oto.transcript_source_id as source_id, gf.product, - 7 as source_rule, + 9 as source_rule, 1 as value_count, 'base_gene_1to1' as rule_description FROM one_to_one_transcripts oto @@ -132,11 +162,11 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp as WHERE gf.product IS NOT NULL ), - -- Priority 8: Base transcript product field + -- Priority 10: Base transcript product field transcript_base AS ( SELECT t.source_id, t.product, - 8 as source_rule, + 10 as source_rule, 1 as value_count, 'base_transcript' as rule_description FROM :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp t @@ -149,6 +179,8 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp as UNION ALL SELECT * FROM gene_curated_any_one_to_one UNION ALL SELECT * FROM transcript_curated_preferred UNION ALL SELECT * FROM transcript_curated_any + UNION ALL SELECT * FROM gene_preferred_one_to_one + UNION ALL SELECT * FROM transcript_preferred_all UNION ALL SELECT * FROM gene_all_one_to_one UNION ALL SELECT * FROM transcript_all UNION ALL SELECT * FROM gene_base_one_to_one @@ -164,7 +196,7 @@ create unlogged table :SCHEMA.:CLEAN_ORG_ABBREVTranscriptProductTmp as SELECT t.source_id, COALESCE(rp.product, 'unspecified product') as product, COALESCE(rp.value_count, 0) as value_count, - COALESCE(rp.source_rule, 9) as source_rule, + COALESCE(rp.source_rule, 11) as source_rule, COALESCE(rp.rule_description, 'unspecified') as source_rule_description, ':PROJECT_ID' as project_id, ':ORG_ABBREV' as org_abbrev, From a2ad2d237ec5d63a6fc0ad212fce4749ab8cee79 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Wed, 22 Apr 2026 13:08:08 -0400 Subject: [PATCH 43/64] fix bigwig file locations --- Model/lib/jbrowse/tcruBrazilA4/tracks.conf | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/Model/lib/jbrowse/tcruBrazilA4/tracks.conf b/Model/lib/jbrowse/tcruBrazilA4/tracks.conf index 41523b050..0cc4ab1b2 100644 --- a/Model/lib/jbrowse/tcruBrazilA4/tracks.conf +++ b/Model/lib/jbrowse/tcruBrazilA4/tracks.conf @@ -1,6 +1,7 @@ [tracks.tcruBrazilA4_Robello_genomeCompartment_RSRC_core] +#BROKEN storeClass=JBrowse/Store/SeqFeature/BigWig -urlTemplate=/a/service/jbrowse/store?data=TcruziBrazilA4/bigwig/tcruBrazilA4_Robello_genomeCompartment_RSRC/BrazilA4_core_compartment_positions.bw +urlTemplate=/a/service/jbrowse/store?data=TcruziBrazilA4/prealigned/bigwig/tcruBrazilA4_Robello_genomeCompartment_WebService_RSRC/BrazilA4_core_compartment_positions.bw key=Core genome compartments in T cruzi Brazil A4 label=Core genome compartments in T cruzi Brazil A4 category=Gene Models @@ -17,8 +18,9 @@ yScalePosition=left [tracks.tcruBrazilA4_Robello_genomeCompartment_RSRC_disruptive] +#BROKEN storeClass=JBrowse/Store/SeqFeature/BigWig -urlTemplate=/a/service/jbrowse/store?data=TcruziBrazilA4/bigwig/tcruBrazilA4_Robello_genomeCompartment_RSRC/BrazilA4_disruptive_compartment_positions.bw +urlTemplate=/a/service/jbrowse/store?data=TcruziBrazilA4/prealigned/bigwig/tcruBrazilA4_Robello_genomeCompartment_WebService_RSRC/BrazilA4_disruptive_compartment_positions.bw key=Disruptive) genome compartments in T cruzi Brazil A4 label=Disruptive) genome compartments in T cruzi Brazil A4 category=Gene Models From 18767b1f64e1ce01496b765b55c5cea67965a1ce Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Wed, 22 Apr 2026 13:14:22 -0400 Subject: [PATCH 44/64] remove comment --- Model/lib/jbrowse/tcruBrazilA4/tracks.conf | 2 -- 1 file changed, 2 deletions(-) diff --git a/Model/lib/jbrowse/tcruBrazilA4/tracks.conf b/Model/lib/jbrowse/tcruBrazilA4/tracks.conf index 0cc4ab1b2..f98cfd7a9 100644 --- a/Model/lib/jbrowse/tcruBrazilA4/tracks.conf +++ b/Model/lib/jbrowse/tcruBrazilA4/tracks.conf @@ -1,5 +1,4 @@ [tracks.tcruBrazilA4_Robello_genomeCompartment_RSRC_core] -#BROKEN storeClass=JBrowse/Store/SeqFeature/BigWig urlTemplate=/a/service/jbrowse/store?data=TcruziBrazilA4/prealigned/bigwig/tcruBrazilA4_Robello_genomeCompartment_WebService_RSRC/BrazilA4_core_compartment_positions.bw key=Core genome compartments in T cruzi Brazil A4 @@ -18,7 +17,6 @@ yScalePosition=left [tracks.tcruBrazilA4_Robello_genomeCompartment_RSRC_disruptive] -#BROKEN storeClass=JBrowse/Store/SeqFeature/BigWig urlTemplate=/a/service/jbrowse/store?data=TcruziBrazilA4/prealigned/bigwig/tcruBrazilA4_Robello_genomeCompartment_WebService_RSRC/BrazilA4_disruptive_compartment_positions.bw key=Disruptive) genome compartments in T cruzi Brazil A4 From 8fe382463b7585ee0a101266b0b0b5c0557f9642 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Wed, 22 Apr 2026 15:51:02 -0400 Subject: [PATCH 45/64] fixes for the "ToxoDB7.3 Transcripts" and "Epitranscriptome of m6A" Toxo ME49 tracks --- Model/lib/jbrowse/tgonME49/tracks.conf | 27 ++++++++++++-------------- 1 file changed, 12 insertions(+), 15 deletions(-) diff --git a/Model/lib/jbrowse/tgonME49/tracks.conf b/Model/lib/jbrowse/tgonME49/tracks.conf index 376b5c4c0..00eb9787d 100644 --- a/Model/lib/jbrowse/tgonME49/tracks.conf +++ b/Model/lib/jbrowse/tgonME49/tracks.conf @@ -608,13 +608,11 @@ region_feature_densities=true [tracks.tgonME49_bld73Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='tgonME49_bld7.3Transcripts_transcript_sequences_RSRC' category=Gene Models key=ToxoDB7.3 Transcripts -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/alignedTranscripts/gff/tgonME49_bld7.3Transcripts_transcript_sequences_RSRC/tgonME49_bld7.3Transcripts_transcript_sequences_RSRC.gff.gz subParts=block -baseUrl=/a/service/jbrowse type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey @@ -623,8 +621,8 @@ metadata.subcategory=Transcripts metadata.trackType=Processed Transcript metadata.dataset=ToxoDB7.3 Transcripts fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("tgonME49_bld7.3Transcripts_transcript_sequences_RSRC", "ToxoDB7.3 Transcripts"); } +onClick.content=function(track, feature){ var c = track.browser.config; return c.sequenceTitleFxn(track, feature) } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} -onClick.content={sequenceTitleFxn} @@ -651,25 +649,24 @@ metadata.trackType=Processed Transcript [tracks.tgonME49_Sullivan_m6A_GFF_RSRC] -query.feature=gff:basic -query.edName='tgonME49_Sullivan_m6A_GFF_RSRC' category=Epigenomics metadata.subcategory=Sequence sites, features and motifs key=Epitranscriptome of m6A -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/prealigned/gff/tgonME49_Sullivan_m6A_WebService_RSRC/tgonME49_Sullivan_m6A.gff.gz type=EbrcTracks/View/Track/CanvasSubtracks glyph=JBrowse/View/FeatureGlyph/Box metadata.trackType=Segments -style.color={gffColorFxn} +style.color=function(feature){ var dbToColor = {'m6A_combined':'grey','m6A_after_24h_alkaline_stress':'purple','m6A_in_tachyzoites':'green'}; return dbToColor[feature.get("source")] || 'grey'; } style.strandArrow=false style.showLabels=false -onClick.content={gffTitleFxn} +unsafePopup="JSON::true" +onClick.content=function(track, feature){ var c = track.browser.config; return c.gffTitle(track, feature) } menuTemplate+=json:{"label": "View Details", "content": "{gffTitleFxn}"} metadata.description=m6A: m6A combined, m6A after 24h alkaline stress, m6A in tachyzoites -subtracks+=json:{"featureFilters":{"source":"m6A combined"},"visible":1,"label":"m6A combined","metadata":{}} -subtracks+=json:{"featureFilters":{"source":"m6A after 24h alkaline stress"},"visible":1,"label":"m6A after 24h alkaline stress","metadata":{}} -subtracks+=json:{"featureFilters":{"source":"m6A in tachyzoites"},"visible":1,"label":"m6A in tachyzoites","metadata":{}} +subtracks+=json:{"featureFilters":{"source":"m6A_combined"},"visible":1,"label":"m6A combined","metadata":{}} +subtracks+=json:{"featureFilters":{"source":"m6A_after_24h_alkaline_stress"},"visible":1,"label":"m6A after 24h alkaline stress","metadata":{}} +subtracks+=json:{"featureFilters":{"source":"m6A_in_tachyzoites"},"visible":1,"label":"m6A in tachyzoites","metadata":{}} metadata.dataset=Epitranscriptome of m6A -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("tgonME49_Sullivan_m6A_GFF_RSRC", "Epitranscriptome of m6A"); } +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("tgonME49_Sullivan_m6A_WebService_RSRC", "Epitranscriptome of m6A"); } From 26248ceca598af0e04860d97f2915a33d7b3e1ad Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Wed, 22 Apr 2026 15:53:47 -0400 Subject: [PATCH 46/64] fixes for the "CRISPR Screen gRNAs" Toxo GT1 track --- Model/lib/jbrowse/tgonGT1/tracks.conf | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/Model/lib/jbrowse/tgonGT1/tracks.conf b/Model/lib/jbrowse/tgonGT1/tracks.conf index a1b8a7774..c95dc8594 100644 --- a/Model/lib/jbrowse/tgonGT1/tracks.conf +++ b/Model/lib/jbrowse/tgonGT1/tracks.conf @@ -1,11 +1,9 @@ [tracks.CrisprPhenotypeGuideRNA] -query.feature=gff:basic -query.edName='tgonGT1_CrisprScreen_GFF_topLevel_RSRC' category=Sequence Analysis metadata.subcategory=Sequence sites, features and motifs key=CRISPR Screen gRNAs -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=TgondiiGT1/prealigned/gff/tgonGT1_CrisprScreen_WebService_RSRC/tgonGT1_CrisprScreen.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box metadata.dataset=Fitness during the T. gondii lytic cycle. (Genome-Wide CRISPR Screen) From eca6e95e5258e8117661576ff987d683d09ac4fc Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Wed, 22 Apr 2026 16:07:49 -0400 Subject: [PATCH 47/64] fix dataset name for link back --- Model/lib/jbrowse/tgonGT1/tracks.conf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Model/lib/jbrowse/tgonGT1/tracks.conf b/Model/lib/jbrowse/tgonGT1/tracks.conf index c95dc8594..03cf9026b 100644 --- a/Model/lib/jbrowse/tgonGT1/tracks.conf +++ b/Model/lib/jbrowse/tgonGT1/tracks.conf @@ -7,7 +7,7 @@ urlTemplate=/a/service/jbrowse/store?data=TgondiiGT1/prealigned/gff/tgonGT1_Cris type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box metadata.dataset=Fitness during the T. gondii lytic cycle. (Genome-Wide CRISPR Screen) -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("tgonGT1_CrisprScreen_GFF_topLevel_RSRC", "Fitness during the T. gondii lytic cycle. (Genome-Wide CRISPR Screen)"); } +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName(" tgonGT1_CrisprScreen_WebService_RSRC", "Fitness during the T. gondii lytic cycle. (Genome-Wide CRISPR Screen)"); } style.color=black style.strandArrow=false metadata.trackType=Segments From 478f035c49807e6a737037043746e7dcebd4919a Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Wed, 22 Apr 2026 16:30:07 -0400 Subject: [PATCH 48/64] fixes for some Fungi gff trakcs --- Model/lib/jbrowse/afumA1163/tracks.conf | 6 ++---- Model/lib/jbrowse/cimmRS/tracks.conf | 6 ++---- .../lib/jbrowse/cposC735deltSOWgp/tracks.conf | 6 ++---- Model/lib/jbrowse/ssch1099-18/tracks.conf | 18 ++++-------------- 4 files changed, 10 insertions(+), 26 deletions(-) diff --git a/Model/lib/jbrowse/afumA1163/tracks.conf b/Model/lib/jbrowse/afumA1163/tracks.conf index c723016bb..cb5f74935 100644 --- a/Model/lib/jbrowse/afumA1163/tracks.conf +++ b/Model/lib/jbrowse/afumA1163/tracks.conf @@ -1,12 +1,10 @@ # [tracks.afumA1163_Weaver_lncRNA_GFF_RSRC] -# query.feature=gff:basic -# query.edName='afumA1163_Weaver_lncRNA_GFF_RSRC' # category=Gene Models # metadata.subcategory=Transcripts # metadata.trackType=Segments -# storeClass=JBrowse/Store/SeqFeature/REST +# storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +# urlTemplate=/a/service/jbrowse/store?data=AfumigatusA1163/prealigned/gff/afumA1163_Weaver_lncRNA_WebService_RSRC/afumA1163_Weaver_lncRNA.gff.gz # style.color={processedTranscriptColor} -# baseUrl=/a/service/jbrowse # type=JBrowse/View/Track/CanvasFeatures # glyph=JBrowse/View/FeatureGlyph/Box # style.strandArrow=false diff --git a/Model/lib/jbrowse/cimmRS/tracks.conf b/Model/lib/jbrowse/cimmRS/tracks.conf index c1979c978..c1f3c0939 100644 --- a/Model/lib/jbrowse/cimmRS/tracks.conf +++ b/Model/lib/jbrowse/cimmRS/tracks.conf @@ -1,8 +1,6 @@ [tracks.cimmRSKirklandTE] -query.feature=gff:basic -query.edName='cimmRS_Kirkland_TE_GFF_RSRC' -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=CimmitisRS/prealigned/gff/cimmRS_Kirkland_TE_WebService_RSRC/cimmRS_Kirkland_TE.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box key=C. immitis RS TE (Kirkland et al) diff --git a/Model/lib/jbrowse/cposC735deltSOWgp/tracks.conf b/Model/lib/jbrowse/cposC735deltSOWgp/tracks.conf index e9a4fffc7..020015489 100644 --- a/Model/lib/jbrowse/cposC735deltSOWgp/tracks.conf +++ b/Model/lib/jbrowse/cposC735deltSOWgp/tracks.conf @@ -1,8 +1,6 @@ [tracks.CposC735KirklandTE] -query.feature=gff:basic -query.edName='cposC735deltSOWgp_Kirkland_TE_GFF_RSRC' -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=CposadasiiC735deltSOWgp/prealigned/gff/cposC735deltSOWgp_Kirkland_TE_WebService_RSRC/cposC735deltSOWgp_Kirkland_TE.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box key=C. posadasii C735 TE (Kirkland et al) diff --git a/Model/lib/jbrowse/ssch1099-18/tracks.conf b/Model/lib/jbrowse/ssch1099-18/tracks.conf index 6099a15a3..417d56bd5 100644 --- a/Model/lib/jbrowse/ssch1099-18/tracks.conf +++ b/Model/lib/jbrowse/ssch1099-18/tracks.conf @@ -1,17 +1,12 @@ [tracks.ssch1099-18_Romeo_MYA-4821_2020-manual] -query.feature=gff:basicAlt -query.edName='ssch1099-18_Romeo_MYA-4821_2020_annotation_GFF_RSRC' -query.source='manual' category=Gene Models -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=Sschenckii1099-18/prealigned/gff/ssch1099-18_Romeo_MYA-4821_2020_annotation_WebService_RSRC/ssch1099-18_Romeo_MYA-4821_2020_annotation.gff.gz style.color={processedGffColor} -baseUrl=/a/service/jbrowse type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box style.strandArrow=false key=Sporothrix schenckii 1099-18 (ATCC MYA-4821) re-annotation (manual) (Giosa et al. 2020) -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures displayMode=normal metadata.subcategory=Transcripts metadata.trackType=Segments @@ -22,19 +17,14 @@ fmtMetaValue_Description=function() { return datasetDescription("S. schenckii st [tracks.ssch1099-18_Romeo_MYA-4821_2020-maker] -query.feature=gff:basicAlt -query.edName='ssch1099-18_Romeo_MYA-4821_2020_annotation_GFF_RSRC' -query.source='maker' category=Gene Models -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=Sschenckii1099-18/prealigned/gff/ssch1099-18_Romeo_MYA-4821_2020_annotation_WebService_RSRC/ssch1099-18_Romeo_MYA-4821_2020_annotation.gff.gz style.color={processedGffColor} -baseUrl=/a/service/jbrowse type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box style.strandArrow=false key=Sporothrix schenckii 1099-18 (ATCC MYA-4821) re-annotation (Maker) (Giosa et al. 2020) -baseUrl=/a/service/jbrowse -type=JBrowse/View/Track/CanvasFeatures displayMode=normal metadata.subcategory=Transcripts metadata.trackType=Segments From 0b5dd7d90e29663ebc18a5a27b8857f89a1ee2bc Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Wed, 22 Apr 2026 17:03:11 -0400 Subject: [PATCH 49/64] fixes for 2 Amoebagff tracks --- Model/lib/jbrowse/ehisHM1IMSS/tracks.conf | 6 ++---- Model/lib/jbrowse/einvIP1/tracks.conf | 6 ++---- 2 files changed, 4 insertions(+), 8 deletions(-) diff --git a/Model/lib/jbrowse/ehisHM1IMSS/tracks.conf b/Model/lib/jbrowse/ehisHM1IMSS/tracks.conf index 5e47895df..af4e7f751 100644 --- a/Model/lib/jbrowse/ehisHM1IMSS/tracks.conf +++ b/Model/lib/jbrowse/ehisHM1IMSS/tracks.conf @@ -20,13 +20,11 @@ region_feature_densities=true [tracks.ehisHM1IMSS_TSS] -query.feature=gff:basic -query.edName='ehisHM1IMSS_TSS_Mornico_GFF_RSRC' category=Sequence Analysis metadata.subcategory=Sequence sites, features and motifs key=TSS Sites -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=EhistolyticaHM1IMSS/prealigned/gff/ehisHM1IMSS_TSS_Mornico_WebService_RSRC/ehisHM1IMSS_TSS_Mornico.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box metadata.dataset=Transcription start sites for E. histolytica diff --git a/Model/lib/jbrowse/einvIP1/tracks.conf b/Model/lib/jbrowse/einvIP1/tracks.conf index 0875f2d4f..d6da6d523 100644 --- a/Model/lib/jbrowse/einvIP1/tracks.conf +++ b/Model/lib/jbrowse/einvIP1/tracks.conf @@ -1,11 +1,9 @@ [tracks.einvIP1_TSS] -query.feature=gff:basic -query.edName='einvIP1_TSS_Mornico_GFF_RSRC' category=Sequence Analysis metadata.subcategory=Sequence sites, features and motifs key=TSS Sites -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=EinvadensIP1/prealigned/gff/einvIP1_TSS_Mornico_WebService_RSRC/einvIP1_TSS_Mornico.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box metadata.dataset=Transcription start sites for E. invadens From 660345f732a2bba3b4de96fcfbb17363728b6380 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Thu, 23 Apr 2026 08:47:01 -0400 Subject: [PATCH 50/64] fix for sub used in m6A Toxo ME49 track --- Model/lib/jbrowse/functions.conf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/Model/lib/jbrowse/functions.conf b/Model/lib/jbrowse/functions.conf index c39a2d3c8..06fe6588e 100644 --- a/Model/lib/jbrowse/functions.conf +++ b/Model/lib/jbrowse/functions.conf @@ -1136,19 +1136,19 @@ interproLink = function(track, feature, featDiv) { } gffTitle = function(track, feature, featDiv) { var c = track.browser.config; - var name = feature.get("name"); + var name = feature.get("name") || feature.get("id"); var seq_id = name.replace(/_m6A/g, ''); - var start = feature.get("startm"); + var start = feature.get("start") + 1; var end = feature.get("end"); var strand = strand = feature.get("strand") == 1 ? "+" : "-"; var length = Math.abs(end - start) + 1; var rows = new Array(); rows.push(c.twoColRow('Name:', name)); rows.push(c.twoColRow('Type:', 'gff')); - rows.push(c.twoColRow('Source:', feature.get("source"))); + rows.push(c.twoColRow('Source:', feature.get("source").replace(/_/g, ' '))); rows.push(c.twoColRow('Position:', seq_id + ":" + start + ".." + end + " (" + strand + " strand)" )); rows.push(c.twoColRow('Length:', length + ' bp')); - rows.push(c.twoColRow('SO Term:', feature.get("soTerm"))); + rows.push(c.twoColRow('SO Term:', feature.get("type"))); return c.table(rows); } microsatelliteTitle = function(track, feature, featDiv) { From df115fbde64d05e9d310cb306cdb77a10dc1a46d Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Thu, 23 Apr 2026 09:04:28 -0400 Subject: [PATCH 51/64] fixed these Fungi tracks, but there is no anotation in gff, so may need some correction --- Model/lib/jbrowse/anidFGSCA4/tracks.conf | 6 ++---- Model/lib/jbrowse/mcirCBS277-49/tracks.conf | 6 ++---- 2 files changed, 4 insertions(+), 8 deletions(-) diff --git a/Model/lib/jbrowse/anidFGSCA4/tracks.conf b/Model/lib/jbrowse/anidFGSCA4/tracks.conf index 787e0c471..dda67a100 100644 --- a/Model/lib/jbrowse/anidFGSCA4/tracks.conf +++ b/Model/lib/jbrowse/anidFGSCA4/tracks.conf @@ -37,13 +37,11 @@ metadata.subcategory=Transcriptional regulatory sites metadata.trackType=XYPlot [tracks.anidFGSCA4_TurnerAnnotation_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='anidFGSCA4_TurnerAnnotation_transcript_sequences_RSRC' category=Gene Models key=A. nidulans FGSC A4 (2009) Genome Sequence and Annotation -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=AnidulansFGSCA4/alignedTranscripts/gff/anidFGSCA4_TurnerAnnotation_transcript_sequences_RSRC/anidFGSCA4_TurnerAnnotation_transcript_sequences_RSRC.gff.gz subParts=block -baseUrl=/a/service/jbrowse type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey diff --git a/Model/lib/jbrowse/mcirCBS277-49/tracks.conf b/Model/lib/jbrowse/mcirCBS277-49/tracks.conf index 04c4e42e5..2601a597f 100644 --- a/Model/lib/jbrowse/mcirCBS277-49/tracks.conf +++ b/Model/lib/jbrowse/mcirCBS277-49/tracks.conf @@ -1,11 +1,9 @@ [tracks.mcirCBS277-49_bld60Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='mcirCBS277-49_bld60Transcripts_transcript_sequences_RSRC' category=Gene Models key=Mucor lusitanicus CBS 277.49 previous annotation track -storeClass=JBrowse/Store/SeqFeature/REST +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=MlusitanicusCBS277-49/alignedTranscripts/gff/mcirCBS277-49_bld60Transcripts_transcript_sequences_RSRC/mcirCBS277-49_bld60Transcripts_transcript_sequences_RSRC.gff.gz subParts=block -baseUrl=/a/service/jbrowse type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript style.utrColor=grey From 46122a8e4f7a6a8f3c78e7f8b3f74e3b34fb997a Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Thu, 23 Apr 2026 09:22:41 -0400 Subject: [PATCH 52/64] fix 2 TSS sites track in Amoeba --- Model/lib/jbrowse/edisSAW760/tracks.conf | 8 +++----- Model/lib/jbrowse/emosLaredo/tracks.conf | 8 +++----- 2 files changed, 6 insertions(+), 10 deletions(-) diff --git a/Model/lib/jbrowse/edisSAW760/tracks.conf b/Model/lib/jbrowse/edisSAW760/tracks.conf index 3a5d730cd..e75be8565 100644 --- a/Model/lib/jbrowse/edisSAW760/tracks.conf +++ b/Model/lib/jbrowse/edisSAW760/tracks.conf @@ -1,15 +1,13 @@ [tracks.edisSAW760_TSS] -query.feature=gff:basic -query.edName='edisSAW760_TSS_Mornico_GFF_RSRC' category=Sequence Analysis metadata.subcategory=Sequence sites, features and motifs key=TSS Sites -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=EdisparSAW760/prealigned/gff/edisSAW760_TSS_Mornico_WebService_RSRC/edisSAW760_TSS_Mornico.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box metadata.dataset=Transcription start sites for E. dispar -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("edisSAW760_TSS_Mornico_GFF_RSRC", "Transcription start sites for E. dispar"); } +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("edisSAW760_TSS_Mornico_WebService_RSRC", "Transcription start sites for E. dispar"); } style.color=black style.strandArrow=false metadata.trackType=Segments diff --git a/Model/lib/jbrowse/emosLaredo/tracks.conf b/Model/lib/jbrowse/emosLaredo/tracks.conf index 97adecb38..1bb224751 100644 --- a/Model/lib/jbrowse/emosLaredo/tracks.conf +++ b/Model/lib/jbrowse/emosLaredo/tracks.conf @@ -1,15 +1,13 @@ [tracks.emosLaredo_TSS] -query.feature=gff:basic -query.edName='emosLaredo_TSS_Mornico_GFF_RSRC' category=Sequence Analysis metadata.subcategory=Sequence sites, features and motifs key=TSS Sites -storeClass=JBrowse/Store/SeqFeature/REST -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=EmoshkovskiiLaredo/prealigned/gff/emosLaredo_TSS_Mornico_WebService_RSRC/emosLaredo_TSS_Mornico.gff.gz type=JBrowse/View/Track/CanvasFeatures glyph=JBrowse/View/FeatureGlyph/Box metadata.dataset=Transcription start sites for E. moshkovskii -fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("emosLaredo_TSS_Mornico_GFF_RSRC", "Transcription start sites for E. moshkovskii"); } +fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("emosLaredo_TSS_Mornico_WebService_RSRC", "Transcription start sites for E. moshkovskii"); } style.color=black style.strandArrow=false metadata.trackType=Segments From 19752c0b5137ca8201930a1aa6267687240d1842 Mon Sep 17 00:00:00 2001 From: Bindu Gajria Date: Fri, 24 Apr 2026 16:37:34 -0400 Subject: [PATCH 53/64] get the transcript gff tracks working correctly --- Model/lib/jbrowse/anidFGSCA4/tracks.conf | 8 ++++---- Model/lib/jbrowse/mcirCBS277-49/tracks.conf | 8 ++++---- Model/lib/jbrowse/pcapLT15342021/tracks.conf | 14 ++++++-------- Model/lib/jbrowse/tgonME49/tracks.conf | 6 +++--- 4 files changed, 17 insertions(+), 19 deletions(-) diff --git a/Model/lib/jbrowse/anidFGSCA4/tracks.conf b/Model/lib/jbrowse/anidFGSCA4/tracks.conf index dda67a100..ec23b6e28 100644 --- a/Model/lib/jbrowse/anidFGSCA4/tracks.conf +++ b/Model/lib/jbrowse/anidFGSCA4/tracks.conf @@ -41,14 +41,14 @@ category=Gene Models key=A. nidulans FGSC A4 (2009) Genome Sequence and Annotation storeClass=JBrowse/Store/SeqFeature/GFF3Tabix urlTemplate=/a/service/jbrowse/store?data=AnidulansFGSCA4/alignedTranscripts/gff/anidFGSCA4_TurnerAnnotation_transcript_sequences_RSRC/anidFGSCA4_TurnerAnnotation_transcript_sequences_RSRC.gff.gz -subParts=block +subParts=veupathdb type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +glyph=JBrowse/View/FeatureGlyph/Segments style.color={alternateTranscriptColor} +style.label=function(feature){ return feature.get("transcriptid"); } metadata.subcategory=Transcripts metadata.trackType=Processed Transcript metadata.dataset=A. nidulans FGSC A4 (2009) Genome Sequence and Annotation fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("anidFGSCA4_TurnerAnnotation_transcript_sequences_RSRC", "A. nidulans FGSC A4 (2009) Genome Sequence and Annotation"); } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} -onClick.content={sequenceTitleFxn} +onClick.content=function(track, feature){ var c = track.browser.config; return c.sequenceTitleFxn(track, feature) } diff --git a/Model/lib/jbrowse/mcirCBS277-49/tracks.conf b/Model/lib/jbrowse/mcirCBS277-49/tracks.conf index 2601a597f..f7eff0034 100644 --- a/Model/lib/jbrowse/mcirCBS277-49/tracks.conf +++ b/Model/lib/jbrowse/mcirCBS277-49/tracks.conf @@ -3,14 +3,14 @@ category=Gene Models key=Mucor lusitanicus CBS 277.49 previous annotation track storeClass=JBrowse/Store/SeqFeature/GFF3Tabix urlTemplate=/a/service/jbrowse/store?data=MlusitanicusCBS277-49/alignedTranscripts/gff/mcirCBS277-49_bld60Transcripts_transcript_sequences_RSRC/mcirCBS277-49_bld60Transcripts_transcript_sequences_RSRC.gff.gz -subParts=block +subParts=veupathdb type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +glyph=JBrowse/View/FeatureGlyph/Segments style.color={alternateTranscriptColor} +style.label=function(feature){ return feature.get("transcriptid"); } metadata.subcategory=Transcripts metadata.trackType=Processed Transcript metadata.dataset=Mucor lusitanicus CBS 277.49 previous annotation track fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("mcirCBS277-49_bld60Transcripts_transcript_sequences_RSRC", "Mucor lusitanicus CBS 277.49 previous annotation track"); } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} -onClick.content={sequenceTitleFxn} +onClick.content=function(track, feature){ var c = track.browser.config; return c.sequenceTitleFxn(track, feature) } diff --git a/Model/lib/jbrowse/pcapLT15342021/tracks.conf b/Model/lib/jbrowse/pcapLT15342021/tracks.conf index 900524165..cf8b0f173 100644 --- a/Model/lib/jbrowse/pcapLT15342021/tracks.conf +++ b/Model/lib/jbrowse/pcapLT15342021/tracks.conf @@ -1,19 +1,17 @@ [tracks.pcapLT15342021_GCA_000325885.1Transcripts_transcript_sequences_RSRC] -query.feature=alignment:sequence -query.edName='pcapLT15342021_GCA_000325885.1Transcripts_transcript_sequences_RSRC' category=Gene Models key=Transcript alignment from JCVI annotation -storeClass=JBrowse/Store/SeqFeature/REST -subParts=block -baseUrl=/a/service/jbrowse +storeClass=JBrowse/Store/SeqFeature/GFF3Tabix +urlTemplate=/a/service/jbrowse/store?data=PcapsiciLT1534/alignedTranscripts/gff/pcapLT1534_GCA_000325885.1Transcripts_transcript_sequences_RSRC/pcapLT1534_GCA_000325885.1Transcripts_transcript_sequences_RSRC.gff.gz +subParts=veupathdb type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +glyph=JBrowse/View/FeatureGlyph/Segments style.color={alternateTranscriptColor} +style.label=function(feature){ return feature.get("transcriptid"); } metadata.subcategory=Transcripts metadata.trackType=Processed Transcript metadata.dataset=Transcript alignment from JCVI annotation fmtMetaValue_Dataset=function() { return datasetLinkByDatasetName("pcapLT15342021_GCA_000325885.1Transcripts_transcript_sequences_RSRC", "Transcript alignment from JCVI annotation"); } menuTemplate+=json:{"label": "View Details", "content": "{sequenceTitleFxn}"} -onClick.content={sequenceTitleFxn} +onClick.content=function(track, feature){ var c = track.browser.config; return c.sequenceTitleFxn(track, feature) } diff --git a/Model/lib/jbrowse/tgonME49/tracks.conf b/Model/lib/jbrowse/tgonME49/tracks.conf index 00eb9787d..5f7a67e21 100644 --- a/Model/lib/jbrowse/tgonME49/tracks.conf +++ b/Model/lib/jbrowse/tgonME49/tracks.conf @@ -612,11 +612,11 @@ category=Gene Models key=ToxoDB7.3 Transcripts storeClass=JBrowse/Store/SeqFeature/GFF3Tabix urlTemplate=/a/service/jbrowse/store?data=TgondiiME49/alignedTranscripts/gff/tgonME49_bld7.3Transcripts_transcript_sequences_RSRC/tgonME49_bld7.3Transcripts_transcript_sequences_RSRC.gff.gz -subParts=block +subParts=veupathdb type=JBrowse/View/Track/CanvasFeatures -glyph=JBrowse/View/FeatureGlyph/ProcessedTranscript -style.utrColor=grey +glyph=JBrowse/View/FeatureGlyph/Segments style.color={alternateTranscriptColor} +style.label=function(feature){ return feature.get("transcriptid"); } metadata.subcategory=Transcripts metadata.trackType=Processed Transcript metadata.dataset=ToxoDB7.3 Transcripts From 8d8d72a31fffed97d9058c83168c406c633f43fd Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Mon, 27 Apr 2026 13:16:49 -0400 Subject: [PATCH 54/64] Add help text --- .../lib/wdk/model/questions/geneQuestions.xml | 44 ++++++++++++++++--- .../wdk/model/questions/params/geneParams.xml | 4 +- 2 files changed, 39 insertions(+), 9 deletions(-) diff --git a/Model/lib/wdk/model/questions/geneQuestions.xml b/Model/lib/wdk/model/questions/geneQuestions.xml index d9b5e1ac1..e291644f0 100644 --- a/Model/lib/wdk/model/questions/geneQuestions.xml +++ b/Model/lib/wdk/model/questions/geneQuestions.xml @@ -952,15 +952,14 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " sorting="gene_source_id asc"/> - - - + + - + - +
+ + In addition to primary metabolites essential for growth and survival, fungi, and some other microorganisms produce secondary metabolites. These often provide competitive advantages for the microorganism in its environment. Importantly, they are also an important source of natural products. These compounds are typically encoded by co-located and co-expressed groups of genes that function together to build, modify, and export the final molecule. This co-localised group is called a biosynthetic gene cluster (BGC). Well-known examples of secondary metabolites include antibiotics like penicillin and erythromycin, antifungals, and immunosuppressants like rapamycin.

+ + antiSMASH is a bioinformatics tool to identify and annotate biosynthetic gene clusters. It works by searching for signature biosynthetic genes whose sequences are well conserved across known clusters. When it detects one of these signature genes, it defines a genomic region around it, predicts the cluster boundaries, and annotates every gene within that region with a predicted function. It then compares the identified cluster against a database of known BGCs to predict what compound the cluster might produce.

+ + Cluster Category
+ The cluster category groups biosynthetic gene clusters (BGCs) into broad classes based on the type of natural product they produce. This is predicted based on the biochemical machinery represented in the cluster.

+ + Common categories you are likely to see include:
+
    +
  • PKS (Polyketide synthases): Clusters that synthesize secondary metabolites comprising complex chains of alternating ketone and methylene groups. These molecules often function as antibiotics, antifungals, or anticancer compounds. Examples include erythromycin and rapamycin.
    • +
  • NRPS (Nonribosomal peptide synthases): Clusters that synthesise secondary metabolites comprising amino acids, including non-proteinogenic amino acids, polymerized without using ribosomes. These molecules often functions as antibiotics or siderophores. Examples include penicillin and vancomycin.
    • +
  • Terpenes: Clusters that make terpenoids, a huge and diverse class of unsaturated hydrocarbons including sterols, pigments, and volatile compounds.
    • +
  • RiPP (Ribosomally synthesised and post-translationally modified peptides): These clusters create compounds from small peptides that are initially made by the ribosome and then heavily modified. Examples include lanthipeptides and bacteriocins.
    • +
  • Other: Clusters whose products cannot be categorized or that use a combination of structures from multiple categories.
    • +


+ + Annotation
+ The annotation describes what a specific gene or protein within the cluster is predicted to do based on sequence similarity to known proteins.

+ + Common annotations you are likely to see include:
+
    +
  • Biosynthetic: These are the signature biosynthetic genes that define a cluster and predict its function. These may be referred to as core or backbone genes.
    • +
  • Biosynthetic additional: These are additional biosynthetic genes that further modify the primary product of a cluster, sometimes called tailoring enzymes, or aiding production of the product by supplying cofactors or substrates.
    • +
  • Regulatory: These are transcription factors or other regulatory elements that control expression of this cluster.
    • +
  • Resistance: The products of these genes protect the organism from its own toxic products. Examples include efflux pumps or enzymes that modify the product futher.
    • +
  • Transport: The products of these genes transport the product to its final location
    • +
  • Other: This label is applied by antiSMASH when a gene has similarity to genes that appear in other BCGs but where the function is not understood.
    • +
  • Unknown: This category is used for genes that have not been annotated by antiSMASH.
    • +


+ +Read more about antismash here

]]> diff --git a/Model/lib/wdk/model/questions/params/geneParams.xml b/Model/lib/wdk/model/questions/params/geneParams.xml index 88b18711f..3a8803c32 100644 --- a/Model/lib/wdk/model/questions/params/geneParams.xml +++ b/Model/lib/wdk/model/questions/params/geneParams.xml @@ -5112,7 +5112,7 @@ products of your selected type (or types).

quote="true" dependedParamRef="organismParams.antismash_organism" includeProjects="FungiDB,UniDB"> - Select one or more secondary metabolite cluster categories. + The cluster category describes what kind of molecule the cluster is likely to make based on the biochemical machinery represnted in the cluster. Select one or more secondary metabolite cluster categories to explore. @@ -5123,7 +5123,7 @@ products of your selected type (or types).

quote="true" dependedParamRef="geneParams.antismash_category, organismParams.antismash_organism" includeProjects="FungiDB,UniDB"> - Select an annotation. Options filter based on the selected category. + The annotation described the function of a specific gene within a biosynthetic cluster. Select one or more annotations to explore. From e656ba5586adb6a62066028f1a7b680ba9e372b3 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Mon, 27 Apr 2026 13:26:42 -0400 Subject: [PATCH 55/64] Fix typo --- Model/lib/wdk/model/questions/params/geneParams.xml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Model/lib/wdk/model/questions/params/geneParams.xml b/Model/lib/wdk/model/questions/params/geneParams.xml index 3a8803c32..c59f94e3e 100644 --- a/Model/lib/wdk/model/questions/params/geneParams.xml +++ b/Model/lib/wdk/model/questions/params/geneParams.xml @@ -5123,7 +5123,7 @@ products of your selected type (or types).

quote="true" dependedParamRef="geneParams.antismash_category, organismParams.antismash_organism" includeProjects="FungiDB,UniDB"> - The annotation described the function of a specific gene within a biosynthetic cluster. Select one or more annotations to explore. + The annotation describes the function of a specific gene within a biosynthetic cluster. Select one or more annotations to explore. From 50327133fdcbb1b9c80115b86aaf15fae8897ee7 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Tue, 28 Apr 2026 11:48:39 -0400 Subject: [PATCH 56/64] Fixes to typos and grammar for Learn More text --- .../lib/wdk/model/questions/geneQuestions.xml | 20 +++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/Model/lib/wdk/model/questions/geneQuestions.xml b/Model/lib/wdk/model/questions/geneQuestions.xml index e291644f0..45f3f73e2 100644 --- a/Model/lib/wdk/model/questions/geneQuestions.xml +++ b/Model/lib/wdk/model/questions/geneQuestions.xml @@ -937,7 +937,7 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as "
- In addition to primary metabolites essential for growth and survival, fungi, and some other microorganisms produce secondary metabolites. These often provide competitive advantages for the microorganism in its environment. Importantly, they are also an important source of natural products. These compounds are typically encoded by co-located and co-expressed groups of genes that function together to build, modify, and export the final molecule. This co-localised group is called a biosynthetic gene cluster (BGC). Well-known examples of secondary metabolites include antibiotics like penicillin and erythromycin, antifungals, and immunosuppressants like rapamycin.

+ In addition to primary metabolites essential for growth and survival, fungi and some other microorganisms produce secondary metabolites. These often provide competitive advantages for the microorganism in its environment. They are also of interest as an important source of natural products. These compounds are typically encoded by co-located and co-expressed groups of genes that function together to build, modify, and export the final molecule. This co-located group is called a biosynthetic gene cluster (BGC). Well-known examples of secondary metabolites include antibiotics like penicillin and erythromycin, antifungals, and immunosuppressants like rapamycin.

- antiSMASH is a bioinformatics tool to identify and annotate biosynthetic gene clusters. It works by searching for signature biosynthetic genes whose sequences are well conserved across known clusters. When it detects one of these signature genes, it defines a genomic region around it, predicts the cluster boundaries, and annotates every gene within that region with a predicted function. It then compares the identified cluster against a database of known BGCs to predict what compound the cluster might produce.

+ antiSMASH is a bioinformatics tool to identify and annotate biosynthetic gene clusters. It works by searching for signature biosynthetic genes whose sequences are well conserved across known clusters. When it detects one of these signature genes, it defines a genomic region around it, predicts the cluster boundaries, and annotates every gene within that region with a predicted function. It then compares the identified cluster against a database of known BGCs to predict what compound the cluster might produce.

Cluster Category
The cluster category groups biosynthetic gene clusters (BGCs) into broad classes based on the type of natural product they produce. This is predicted based on the biochemical machinery represented in the cluster.

@@ -984,8 +984,8 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " Common categories you are likely to see include:
  • PKS (Polyketide synthases): Clusters that synthesize secondary metabolites comprising complex chains of alternating ketone and methylene groups. These molecules often function as antibiotics, antifungals, or anticancer compounds. Examples include erythromycin and rapamycin.
    • -
  • NRPS (Nonribosomal peptide synthases): Clusters that synthesise secondary metabolites comprising amino acids, including non-proteinogenic amino acids, polymerized without using ribosomes. These molecules often functions as antibiotics or siderophores. Examples include penicillin and vancomycin.
    • -
  • Terpenes: Clusters that make terpenoids, a huge and diverse class of unsaturated hydrocarbons including sterols, pigments, and volatile compounds.
    • +
  • NRPS (Nonribosomal peptide synthases): Clusters that synthesize secondary metabolites comprising amino acids, including non-proteinogenic amino acids, polymerized without using ribosomes. These molecules often function as antibiotics or siderophores. Examples include penicillin and vancomycin.
    • +
  • Terpenes: Clusters that make terpenoids, a huge and diverse class of compounds derived from isoprene units, including sterols, pigments, and volatile compounds.
  • RiPP (Ribosomally synthesised and post-translationally modified peptides): These clusters create compounds from small peptides that are initially made by the ribosome and then heavily modified. Examples include lanthipeptides and bacteriocins.
  • Other: Clusters whose products cannot be categorized or that use a combination of structures from multiple categories.


@@ -996,12 +996,12 @@ In the analysis carried out by Alsford et al., pseudogenes, genes annotated as " Common annotations you are likely to see include:
  • Biosynthetic: These are the signature biosynthetic genes that define a cluster and predict its function. These may be referred to as core or backbone genes.
    • -
  • Biosynthetic additional: These are additional biosynthetic genes that further modify the primary product of a cluster, sometimes called tailoring enzymes, or aiding production of the product by supplying cofactors or substrates.
    • +
  • Biosynthetic additional: These are additional biosynthetic genes that further modify the primary product of a cluster (tailoring or decorating enzymes), or aid production of the product by supplying cofactors or substrates.
  • Regulatory: These are transcription factors or other regulatory elements that control expression of this cluster.
    • -
  • Resistance: The products of these genes protect the organism from its own toxic products. Examples include efflux pumps or enzymes that modify the product futher.
    • -
  • Transport: The products of these genes transport the product to its final location
    • -
  • Other: This label is applied by antiSMASH when a gene has similarity to genes that appear in other BCGs but where the function is not understood.
    • -
  • Unknown: This category is used for genes that have not been annotated by antiSMASH.
    • +
  • Resistance: These genes protect the organism from its own toxic products. Examples include efflux pumps or enzymes that modify the product futher to protect the host.
    • +
  • Transport: These genes transport the product to its final location.
    • +
  • Other: This label is applied by antiSMASH when a gene has similarity to genes that appear in other BCGs but where the role of the gene within the BCG is not understood.
    • +
  • Unknown: This category is used for genes with no detectable similarity to antiSMASH models, and which have therefore not been annotated by antiSMASH.


Read more about antismash here

From 0856533d1fe2abd9dfc0e53b6df0aa2b4c6ea1aa Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Tue, 28 Apr 2026 11:59:45 -0400 Subject: [PATCH 57/64] Add new search to ontology --- Model/lib/wdk/ontology/individuals.txt | 2192 ++++++++++++------------ 1 file changed, 1096 insertions(+), 1096 deletions(-) diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index 8d3a2aa60..be69e33df 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -1,1096 +1,1096 @@ - recordClassName targetType name displayName shortDisplayName description geneOrTranscript displayOrder scope scope scope - eupath/eupath.owl#recordClassName eupath/eupath.owl#targetType eupath/eupath.owl#name EUPATH_0000052 eupath/eupath.owl#shortDisplayName eupath/eupath.owl#description eupath/eupath.owl#geneOrTranscript EUPATH_0000274 eupath/eupath.owl#scope eupath/eupath.owl#scope eupath/eupath.owl#scope -GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory Genomic Sequence Properties 5 -GenomicSequenceLocationCategory GenomicSequenceLocationCategory Genomic Location 6 -TextCategory TextCategory Text 1 -AlignmentsCategory http://edamontology.org/topic_0080 Sequence Analysis AlignmentsCategory BLAT and Blast Alignments -CodingPotentialCategory http://edamontology.org/topic_0080 Sequence Analysis CodingPotentialCategory Coding Potential -InterProDomainsCategory http://edamontology.org/topic_0123 Protein properties InterProDomainsCategory InterPro Domains -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByCompoundID http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByCompoundID menu webservice - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByEcReaction http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByEcReaction menu webservice -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChange http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChange menu webservice -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByGeneID http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByGeneID -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularFormula http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByMolecularFormula menu webservice -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularWeight http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByMolecularWeight menu webservice -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathway http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPathway menu webservice -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathwayID http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPathwayID -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByText http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByText menu webservice -EstRecordClasses.EstRecordClass.EstQuestions.EstBySourceId http://edamontology.org/topic_0219 annot and curation EstRecordClasses.EstRecordClass search EstQuestions.EstBySourceId menu webservice -EstRecordClasses.EstRecordClass.EstQuestions.ESTsByGeneIDs http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.ESTsByGeneIDs menu webservice -EstRecordClasses.EstRecordClass.EstQuestions.EstsByLibrary http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsByLibrary menu webservice -EstRecordClasses.EstRecordClass.EstQuestions.EstsByLocation http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsByLocation menu webservice -EstRecordClasses.EstRecordClass.EstQuestions.EstsBySimilarity http://edamontology.org/topic_0080 Sequence Analysis EstRecordClasses.EstRecordClass search EstQuestions.EstsBySimilarity webservice -EstRecordClasses.EstRecordClass.EstQuestions.EstsByMultiBlast http://edamontology.org/topic_0080 Sequence Analysis EstRecordClasses.EstRecordClass search EstQuestions.EstsByMultiBlast menu webservice -EstRecordClasses.EstRecordClass.EstQuestions.EstsByWeightFilter http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsByWeightFilter -EstRecordClasses.EstRecordClass.EstQuestions.EstsWithGeneOverlap http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsWithGeneOverlap menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions. -GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC searchCategory-transcriptomics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC internal webservice - -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC searchCategory-transcriptomics-iterativeWGCNA TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC internal webservice - -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC internal webservice - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC internal webservice - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC internal webservice - - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC internal webservice - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC internal webservice - - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC internal webservice - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC internal webservice - - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC internal webservice - -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC internal webservice - -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCoexpression searchCategory-coexpression TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCoexpression internal webservice - -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCandidaCoexpression searchCategory-coexpression TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCandidaCoexpression internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNeurosporaCoexpression searchCategory-coexpression TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByNeurosporaCoexpression internal webservice - -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile searchCategory-transcriptomics-percentile TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByLocusTag http://edamontology.org/topic_0219 annot and curation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GeneByLocusTag menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneBySingleLocusTag http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GeneBySingleLocusTag webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByTranscriptID http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GeneByTranscriptID webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByBindingSiteFeature http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByBindingSiteFeature menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCentromereProximity GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCentromereProximity menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEcNumber http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEcNumber menu webservice -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByFunctionalGeneList http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByFunctionalGeneList menu -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesBySubcellularLocalization http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesBySubcellularLocalization menu -##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC menu webservice -##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC http://edamontology.org/topic_1775 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExonCount http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByExonCount webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByParalogCount http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByParalogCount menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExportPrediction http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByExportPrediction menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneType http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGeneType webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIntronJunctions http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByIntronJunctions menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneModelChars http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGeneModelChars menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGoTerm http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGoTerm menu webservice -## TEMPLATE_ANCHOR geneImageGoTermOntology -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByHighThroughputPhenotyping searchCategory-phenotype-quantitative Phenomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByHighThroughputPhenotyping webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByInterproDomain http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByInterproDomain menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIsoelectricPoint http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByIsoelectricPoint menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByLocation menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMassSpec http://edamontology.org/topic_0121 Proteomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMassSpec menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPTM http://edamontology.org/topic_0121 Proteomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPTM menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathwayHagai http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMetabolicPathwayHagai menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathway http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMetabolicPathway menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByReactionCompounds http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByReactionCompounds menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMolecularWeight http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMolecularWeight menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMotifSearch http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMotifSearch menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNgsSnps http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByNgsSnps menu webservice -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumber http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCopyNumber menu webservice -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumberComparison http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCopyNumberComparison menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNonnuclearLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByNonnuclearLocation menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOldAnnotation http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByOldAnnotation -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOrthologPattern http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByOrthologPattern menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhyleticProfile http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhyleticProfile menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPdbSimilarity http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPdbSimilarity menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithAlphafold http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithAlphafold menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySingleCell http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySingleCell menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFungiProteinProteinInteraction searchCategory-interactions TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByFungiProteinProteinInteraction internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPlasmoProteinProteinInteraction searchCategory-interactions TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPlasmoProteinProteinInteraction internal webservice -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC menu webservice -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRodentMalariaPhenotype http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRodentMalariaPhenotype -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySecondaryStructure http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySecondaryStructure menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySimilarity http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySimilarity webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMultiBlast http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMultiBlast menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySnps http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySnps menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularLocalization http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySubcellularLocalization menu webservice -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalInteraction TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByFunctionalInteraction menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTaxon http://edamontology.org/topic_0637 Taxonomy TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByTaxon menu webservice -GeneRecordClasses.GeneRecordClass.GeneQuestions.GenesByTaxonGene http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass search GeneQuestions.GenesByTaxonGene webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTelomereProximity GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByTelomereProximity menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByText TextCategory TextCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByText menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTransmembraneDomains http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByTransmembraneDomains menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesOrthologousToAGivenGene http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesOrthologousToAGivenGene webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithEpitopes http://edamontology.org/topic_0804 immunoproteins,genes,antigens TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithEpitopes menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithSignalPeptide http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithSignalPeptide menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithStructurePrediction http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithStructurePrediction menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUpdatedAnnotation http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithUpdatedAnnotation menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUserComments http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithUserComments menu webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithApolloAnnotation http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithApolloAnnotation internal webservice -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.InternalGenesByEcNumber TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.InternalGenesByEcNumber -TranscriptAttributes.MetaRandomIntAttr RandomIntAttr TranscriptRecordClasses.TranscriptRecordClass attributeMetaQuery MetaRandomIntAttr Random Integer gene results download -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceBySourceId http://edamontology.org/topic_0219 annot and curation SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequenceBySourceId menu webservice -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceByWeightFilter SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequenceByWeightFilter -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesBySimilarity http://edamontology.org/topic_0080 Sequence Analysis SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesBySimilarity webservice -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByMultiBlast http://edamontology.org/topic_0080 Sequence Analysis SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesByMultiBlast menu webservice -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByTaxon http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesByTaxon menu webservice -##SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByPloidy http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesByPloidy menu webservice -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByProteinArray http://edamontology.org/topic_0804 Immunology TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByProteinArray menu -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByMicroarrayEvidence http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByMicroarrayEvidence menu -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByQuantitativeProteomics http://edamontology.org/topic_0121 Proteomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByQuantitativeProteomics menu -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByPhenotypeEvidence http://edamontology.org/topic_3298 Phenotype TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByPhenotypeEvidence menu -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRNASeqEvidence http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByRNASeqEvidence menu - -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByY2hInteractions http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByY2hInteractions menu - - - -CompoundRecordClasses.CompoundRecordClass.InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence menu - - -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRTPCREvidence http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByRTPCREvidence menu -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByChIPchip http://edamontology.org/topic_3173 Epigenomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByChIPchip menu -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByCompoundsTransform Metabolomics TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByCompoundsTransform -##TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMassSpecEvidence Proteomics TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByMassSpecEvidence -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMissingTranscriptsTransform TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByMissingTranscriptsTransform -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByOrthologs Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByOrthologs -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByPathwaysTransform TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByPathwaysTransform -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByProteinStructure Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByProteinStructure -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByCountry http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByCountry menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByHost http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByHost menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByPopsetId http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByPopsetId menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByIsolationSource http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByIsolationSource menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByProduct http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByProduct menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByStudy http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByStudy -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByTaxon http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByTaxon menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsBySimilarity http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetsBySimilarity webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByMultiBlast http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetsByMultiBlast menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetIsolatesByText http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetIsolatesByText menu webservice -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByWeightFilter http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetsByWeightFilter -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfByOrfId http://edamontology.org/topic_0219 annot and curation OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfByOrfId menu webservice -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsByLocation menu webservice -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByMotifSearch http://edamontology.org/topic_0080 Sequence Analysis OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsByMotifSearch menu webservice -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsBySimilarity http://edamontology.org/topic_0080 Sequence Analysis OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsBySimilarity menu webservice -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByWeightFilter http://edamontology.org/topic_0219 annot and curation OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsByWeightFilter -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompoundIds http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByCompoundIds -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompounds http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByCompounds menu webservice -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneIds http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByGeneIds -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneList http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByGeneList menu webservice -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByIdentifierList http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByIdentifierList menu webservice -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByPathwayID http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByPathwayID menu webservice -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByWeightFilter PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByWeightFilter -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpBySourceId http://edamontology.org/topic_0219 annot and curation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpBySourceId 1 menu webservice -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByGeneId http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByGeneId 5 menu webservice -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByIsolatePattern http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByIsolatePattern 4 menu webservice -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByLocation 2 menu webservice -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByStrain http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByStrain 3 menu webservice -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByWeightFilter http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByWeightFilter -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpBySourceId http://edamontology.org/topic_0219 annot and curation SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpBySourceId 1 menu webservice -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByGeneIds http://edamontology.org/topic_0199 SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByGeneIds 5 menu webservice -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByIsolateGroup http://edamontology.org/topic_0199 SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByIsolateGroup 3 menu webservice -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByLocation 2 menu webservice -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByTwoIsolateGroups http://edamontology.org/topic_0199 Genetic variation SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByTwoIsolateGroups 4 menu webservice -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByEQTLtoGenes DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansByEQTLtoGenes menu webservice -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByMotifSearch DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansByMotifSearch menu webservice -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySourceId DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansBySourceId menu webservice -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansBySpanLogic -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByWeightFilter DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansByWeightFilter -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenesBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.GenesBySpanLogic -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.OrfsBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.OrfsBySpanLogic -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.SnpsBySpanLogic -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsChipsBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.SnpsChipsBySpanLogic -SampleRecordClasses.SampleRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SampleRecordClasses.SampleRecordClass attribute record_overview record-internal -SampleRecordClasses.SampleRecordClass.Characteristics http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table Characteristics 3 record download -SampleRecordClasses.SampleRecordClass.Protocols http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table Protocols 2 record download -SampleRecordClasses.SampleRecordClass.ProcessedSample http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table ProcessedSample 4 record download -SampleRecordClasses.SampleRecordClass.Datasets http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table Datasets 1 record download -RflpIsolateRecordClasses.RflpIsolateRecordClass.Datasets http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table Datasets 1 record download -RflpIsolateRecordClasses.RflpIsolateRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation RflpIsolateRecordClasses.RflpIsolateRecordClass attribute record_overview record-internal -RflpIsolateRecordClasses.RflpIsolateRecordClass.Characteristics http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table Characteristics 2 record download -RflpIsolateRecordClasses.RflpIsolateRecordClass.Protocols http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table Protocols 2 record download -RflpIsolateRecordClasses.RflpIsolateRecordClass.ProcessedSample http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table ProcessedSample 3 record download -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpGenotype http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table RflpGenotype 3 record download -GeneRecordClasses.GeneRecordClass.Sequences http://edamontology.org/data_2044 sequences GeneRecordClasses.GeneRecordClass table Sequences gene record -GeneRecordClasses.GeneRecordClass.GeneTranscripts http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass table GeneTranscripts gene record download -GeneRecordClasses.GeneRecordClass.CellularLocalization http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table CellularLocalization gene record download -GeneRecordClasses.GeneRecordClass.ECNumbers http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table ECNumbers transcript record download -GeneRecordClasses.GeneRecordClass.SubcellularLocationGeneLists http://edamontology.org/topic_0140 Subcellular Localization GeneRecordClasses.GeneRecordClass table SubcellularLocationGeneLists transcript record -GeneRecordClasses.GeneRecordClass.FunctionPredictionGeneLists http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table FunctionPredictionGeneLists transcript record -GeneRecordClasses.GeneRecordClass.ECNumbersInferred http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table ECNumbersInferred transcript record download -GeneRecordClasses.GeneRecordClass.ProteinSequence http://edamontology.org/data_2976 Protin Sequence GeneRecordClasses.GeneRecordClass table ProteinSequence transcript download record - -GeneRecordClasses.GeneRecordClass.Seqedits http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass table Seqedits gene record -GeneRecordClasses.GeneRecordClass.Antibody http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table Antibody gene record download -GeneRecordClasses.GeneRecordClass.CommunityExpComments http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table CommunityExpComments gene record download -GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationDatasets http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table EdaCellularLocalizationDatasets gene record -GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationGraphsDataTable http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table EdaCellularLocalizationGraphsDataTable gene record-internal download -GeneRecordClasses.GeneRecordClass.Products http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Products transcript record download -GeneRecordClasses.GeneRecordClass.SNPsAlignment http://edamontology.org/topic_0199 Genetic Variation GeneRecordClasses.GeneRecordClass table SNPsAlignment gene record -GeneRecordClasses.GeneRecordClass.MercatorTable http://edamontology.org/topic_3299 EvoBiol Comparison GeneRecordClasses.GeneRecordClass table MercatorTable gene record - -GeneRecordClasses.GeneRecordClass.Apollo_link http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass table Apollo_link gene record -GeneRecordClasses.GeneRecordClass.Apollo_link http://edamontology.org/topic_0080 Gene Models GeneRecordClasses.GeneRecordClass table Apollo_link gene record - -GeneRecordClasses.GeneRecordClass.PhenotypeScore http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeScore gene record -GeneRecordClasses.GeneRecordClass.PhenotypeGraphsDataTable http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeGraphsDataTable gene record-internal download -GeneRecordClasses.GeneRecordClass.specialJbrowseUrl http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass attribute specialJbrowseUrl 1 gene record-internal -GeneRecordClasses.GeneRecordClass.ExpressionGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ExpressionGraphsDataTable gene record-internal -GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table UserDatasetsTranscriptomicsGraphsDataTable gene record-internal -GeneRecordClasses.GeneRecordClass.FacetMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FacetMetadata gene record-internal -GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FungiVBOrgLinkoutsTable gene record-internal - -GeneRecordClasses.GeneRecordClass.ContXAxisMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ContXAxisMetadata gene record-internal -GeneRecordClasses.GeneRecordClass.ai_expression http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute ai_expression gene 2 record -GeneRecordClasses.GeneRecordClass.TranscriptionSummary http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table TranscriptionSummary gene 2 record -GeneRecordClasses.GeneRecordClass.ExpressionGraphs http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ExpressionGraphs gene 3 record -GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphs http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table UserDatasetsTranscriptomicsGraphs gene 4 record -GeneRecordClasses.GeneRecordClass.SpliceSites http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table SpliceSites gene 2 record download -GeneRecordClasses.GeneRecordClass.PolyASites http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table PolyASites gene 3 record download -GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages gene 3 record download -GeneRecordClasses.GeneRecordClass.afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages gene 3 record download -GeneRecordClasses.GeneRecordClass.afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages gene 3 record download -GeneRecordClasses.GeneRecordClass.pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC gene 3 download -GeneRecordClasses.GeneRecordClass.pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype gene 3 record download -GeneRecordClasses.GeneRecordClass.pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC gene 3 download -GeneRecordClasses.GeneRecordClass.pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC gene 3 download -GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype gene 3 record download -GeneRecordClasses.GeneRecordClass.PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype gene 3 record download -GeneRecordClasses.GeneRecordClass.CGD_CuratedPhenotypes http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table CGD_CuratedPhenotypes gene 3 record download -GeneRecordClasses.GeneRecordClass.ProteinExpressionGraphs http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table ProteinExpressionGraphs gene record -GeneRecordClasses.GeneRecordClass.HostResponseGraphs http://edamontology.org/topic_0804 Immunology GeneRecordClasses.GeneRecordClass table HostResponseGraphs gene record -GeneRecordClasses.GeneRecordClass.EdaPhenotypeDatasets http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table EdaPhenotypeDatasets gene record -GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphs http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeScoreGraphs gene record -GeneRecordClasses.GeneRecordClass.eQTLPhenotypeGraphs http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table eQTLPhenotypeGraphs gene record -GeneRecordClasses.GeneRecordClass.PhenotypeGraphs http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeGraphs gene record -GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphsDataTable http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeScoreGraphsDataTable gene record-internal -GeneRecordClasses.GeneRecordClass.EdaPhenotypeGraphsDataTable http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table EdaPhenotypeGraphsDataTable gene record-internal download -GeneRecordClasses.GeneRecordClass.HostResponseGraphsDataTable http://edamontology.org/topic_0804 Immunology GeneRecordClasses.GeneRecordClass table HostResponseGraphsDataTable gene record-internal download -GeneRecordClasses.GeneRecordClass.RodMalPhenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table RodMalPhenotype transcript record download -GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table Plasmo_eQTL_Table transcript record download -GeneRecordClasses.GeneRecordClass.Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table Phenotype transcript record download -GeneRecordClasses.GeneRecordClass.PhenotypeMagnaporthe http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeMagnaporthe transcript record download -GeneRecordClasses.GeneRecordClass.InterPro http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table InterPro transcript record download -GeneRecordClasses.GeneRecordClass.WolfPsortForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table WolfPsortForm transcript record -GeneRecordClasses.GeneRecordClass.BlastpForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table BlastpForm transcript record -GeneRecordClasses.GeneRecordClass.InterProForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table InterProForm transcript record -GeneRecordClasses.GeneRecordClass.MendelGPIForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table MendelGPIForm transcript record -GeneRecordClasses.GeneRecordClass.FungalGPIForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table FungalGPIForm transcript record -GeneRecordClasses.GeneRecordClass.StringDBForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table StringDBForm transcript record -GeneRecordClasses.GeneRecordClass.hasAlphaFold http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass attribute hasAlphaFold gene record-internal -GeneRecordClasses.GeneRecordClass.alphafold_url http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass attribute alphafold_url gene record -GeneRecordClasses.GeneRecordClass.AlphaFoldLinkouts http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table AlphaFoldLinkouts gene record download -GeneRecordClasses.GeneRecordClass.TMHMM http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table TMHMM transcript download -GeneRecordClasses.GeneRecordClass.LowComplexity http://edamontology.org/topic_0160 Sequence sites, features and motifs GeneRecordClasses.GeneRecordClass table LowComplexity transcript download -GeneRecordClasses.GeneRecordClass.GeneModelDump http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass table GeneModelDump transcript download -GeneRecordClasses.GeneRecordClass.SignalP http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table SignalP transcript download -GeneRecordClasses.GeneRecordClass.GeneLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass table GeneLocation transcript record download -GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table http://edamontology.org/topic_3298 Phenomics GeneRecordClasses.GeneRecordClass table Plasmo_eQTL_Table gene record download -GeneRecordClasses.GeneRecordClass.UserComments http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table UserComments gene record download -GeneRecordClasses.GeneRecordClass.Notes http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Notes gene record download -GeneRecordClasses.GeneRecordClass.external_db_name http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute external_db_name gene record-internal -GeneRecordClasses.GeneRecordClass.external_db_version http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute external_db_version gene record-internal -GeneRecordClasses.GeneRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute record_overview gene -GeneRecordClasses.GeneRecordClass.EcNumber http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table EcNumber transcript record -GeneRecordClasses.GeneRecordClass.MassSpec http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table MassSpec transcript record -GeneRecordClasses.GeneRecordClass.MassSpecDownload http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table MassSpecDownload transcript download -GeneRecordClasses.GeneRecordClass.MassSpecMod http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table MassSpecMod transcript record download -GeneRecordClasses.GeneRecordClass.GOSlim http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table GOSlim transcript record download -GeneRecordClasses.GeneRecordClass.GOTerms http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table GOTerms transcript record download -GeneRecordClasses.GeneRecordClass.Y2hInteractions http://edamontology.org/topic_0128 Protein Interactions GeneRecordClasses.GeneRecordClass table Y2hInteractions gene record download -GeneRecordClasses.GeneRecordClass.Orthologs http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass table Orthologs gene record -GeneRecordClasses.GeneRecordClass.OrthologsLite http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass table OrthologsLite gene -GeneRecordClasses.GeneRecordClass.MetabolicPathwaysMPMP http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MetabolicPathwaysMPMP transcript 1 record download -GeneRecordClasses.GeneRecordClass.MetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MetabolicPathways transcript 2 record download -GeneRecordClasses.GeneRecordClass.Alias http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Alias transcript record download -GeneRecordClasses.GeneRecordClass.strain http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute strain gene record-internal download -GeneRecordClasses.GeneRecordClass.PubMed http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass table PubMed transcript record download -GeneRecordClasses.GeneRecordClass.Cellxgene http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table Cellxgene transcript record -GeneRecordClasses.GeneRecordClass.GeneLinkouts http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneLinkouts transcript record download -GeneRecordClasses.GeneRecordClass.3dPreds http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table 3dPreds transcript 2 record download -GeneRecordClasses.GeneRecordClass.PdbSimilarities http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table PdbSimilarities transcript 1 record download -GeneRecordClasses.GeneRecordClass.Ssgcid http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table Ssgcid transcript 3 record -GeneRecordClasses.GeneRecordClass.Epitopes http://edamontology.org/topic_0804 immunoproteins,genes,antigens GeneRecordClasses.GeneRecordClass table Epitopes transcript record download -GeneRecordClasses.GeneRecordClass.Product http://edamontology.org/topic_0123 Protein properties GeneRecordClasses.GeneRecordClass table Product transcript -GeneRecordClasses.GeneRecordClass.GeneName http://edamontology.org/data_2299 Gene name GeneRecordClasses.GeneRecordClass table GeneName transcript -GeneRecordClasses.GeneRecordClass.ProteinExpressionPBrowse http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table ProteinExpressionPBrowse transcript record -GeneRecordClasses.GeneRecordClass.ProteinProperties http://edamontology.org/topic_0123 Protein properties GeneRecordClasses.GeneRecordClass table ProteinProperties transcript download record download -GeneRecordClasses.GeneRecordClass.AllProducts http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table AllProducts transcript 2 results record download -GeneRecordClasses.GeneRecordClass.ApolloProducts http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table ApolloProducts transcript 3 results record -GeneRecordClasses.GeneRecordClass.GeneId http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneId gene Record-internal -GeneRecordClasses.GeneRecordClass.GeneGffAliases http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneGffAliases gene -GeneRecordClasses.GeneRecordClass.GeneGffGoTerms http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table GeneGffGoTerms gene -GeneRecordClasses.GeneRecordClass.GeneGffDbxrefs http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneGffDbxrefs gene record -GeneRecordClasses.GeneRecordClass.GenBankLocations GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass table GenBankLocations transcript download record -GeneRecordClasses.GeneRecordClass.CompoundsMetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table CompoundsMetabolicPathways transcript 3 record download -GeneRecordClasses.GeneRecordClass.MobileElements http://edamontology.org/topic_0798 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MobileElements transcript 3 record download -GeneRecordClasses.GeneRecordClass.MetaTable http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass table MetaTable gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMis http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pfal3D7PiggyBacMutMis gene results download -TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMfs http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pfal3D7PiggyBacMutMfs gene results download - -TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutHMS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoHPiggyBacMutHMS gene results download -TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutOIS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoHPiggyBacMutOIS gene results download -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMIS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMIS gene results download -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMISplus http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMISplus gene results download -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMFS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMFS gene results download -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMutability http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMutability gene results download -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncPE http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncPE gene results download -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLiver http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncLiver gene results download -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLung http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncLung gene results download -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncSpleen http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncSpleen gene results download -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprMeanPhenotype http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprMeanPhenotype gene results download -TranscriptRecordClasses.TranscriptRecordClass.Publications http://edamontology.org/topic_3068 Literature and Reference TranscriptRecordClasses.TranscriptRecordClass attribute Publications transcript -TranscriptRecordClasses.TranscriptRecordClass.dic_img_uri http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute dic_img_uri gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.gfp_img_uri http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute gfp_img_uri gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.is_visible http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute is_visible gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.has_image http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute has_image gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.dbp_image_note http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute dbp_image_note gene results download -TranscriptRecordClasses.TranscriptRecordClass.dbp_image http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute dbp_image gene results -TranscriptRecordClasses.TranscriptRecordClass.overview http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute overview gene -TranscriptRecordClasses.TranscriptRecordClass.snpoverview http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute snpoverview gene -TranscriptRecordClasses.TranscriptRecordClass.gbrowseLink http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gbrowseLink gene -GeneRecordClasses.GeneRecordClass.jbrowseLink http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute jbrowseLink gene record-internal -GeneRecordClasses.GeneRecordClass.pbrowseLink http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute pbrowseLink gene record-internal -GeneRecordClasses.GeneRecordClass.geneJbrowseUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute geneJbrowseUrl gene record-internal -GeneRecordClasses.GeneRecordClass.geneJbrowseFullUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute geneJbrowseFullUrl gene record-internal -GeneRecordClasses.GeneRecordClass.geneApolloFullUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute geneApolloFullUrl gene record-internal -GeneRecordClasses.GeneRecordClass.apolloIdCheck http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute apolloIdCheck gene record-internal -GeneRecordClasses.GeneRecordClass.snpsJbrowseUrl http://edamontology.org/topic_2885 DNAPolymorhph GeneRecordClasses.GeneRecordClass attribute snpsJbrowseUrl gene record-internal -GeneRecordClasses.GeneRecordClass.snpsJbrowseFullUrl http://edamontology.org/topic_2885 DNAPolymorhph GeneRecordClasses.GeneRecordClass attribute snpsJbrowseFullUrl gene record-internal -GeneRecordClasses.GeneRecordClass.blatJbrowseUrl http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass attribute blatJbrowseUrl gene record-internal -GeneRecordClasses.GeneRecordClass.blatJbrowseFullUrl http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass attribute blatJbrowseFullUrl gene record-internal -GeneRecordClasses.GeneRecordClass.syntenyJbrowseUrl http://edamontology.org/topic_3299 orthologs and synteny GeneRecordClasses.GeneRecordClass attribute syntenyJbrowseUrl gene record-internal -GeneRecordClasses.GeneRecordClass.syntenyJbrowseFullUrl http://edamontology.org/topic_3299 orthologs and synteny GeneRecordClasses.GeneRecordClass attribute syntenyJbrowseFullUrl gene record-internal -GeneRecordClasses.GeneRecordClass.microarray_dataset_count http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute microarray_dataset_count gene 1 record -GeneRecordClasses.GeneRecordClass.rnaseq_dataset_count http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute rnaseq_dataset_count gene 1 record -GeneRecordClasses.GeneRecordClass.CoverageJbrowseUrl http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute CoverageJbrowseUrl gene record-internal -GeneRecordClasses.GeneRecordClass.CoverageJbrowseIntUrl http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute CoverageJbrowseIntUrl gene record-internal -GeneRecordClasses.GeneRecordClass.GeneModelGbrowseUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute GeneModelGbrowseUrl gene record -GeneRecordClasses.GeneRecordClass.GeneApolloGbrowseUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute GeneModelApolloUrl gene record -GeneRecordClasses.GeneRecordClass.BlatAlignmentsGbrowseUrl http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass attribute BlatAlignmentsGbrowseUrl gene record -GeneRecordClasses.GeneRecordClass.SyntenyGbrowseUrl http://edamontology.org/topic_3299 orthologs and synteny GeneRecordClasses.GeneRecordClass attribute SyntenyGbrowseUrl gene record -GeneRecordClasses.GeneRecordClass.SnpsGbrowseUrl http://edamontology.org/topic_2885 DNAPolymorhph GeneRecordClasses.GeneRecordClass attribute SnpsGbrowseUrl gene record -GeneRecordClasses.GeneRecordClass.protein_expression_gtracks http://www.w3.org/2002/07/owl#Thing thing GeneRecordClasses.GeneRecordClass attribute protein_expression_gtracks gene record-internal -GeneRecordClasses.GeneRecordClass.ProteomicsPbrowseUrl http://www.w3.org/2002/07/owl#Thing thing GeneRecordClasses.GeneRecordClass attribute ProteomicsPbrowseUrl gene record-internal -GeneRecordClasses.GeneRecordClass.FeaturesPbrowseUrl http://www.w3.org/2002/07/owl#Thing thing GeneRecordClasses.GeneRecordClass attribute FeaturesPbrowseUrl gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.genus_species http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute genus_species gene record-internal -GeneRecordClasses.GeneRecordClass.genus_species http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute genus_species gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.gene_context_start http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_context_start gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.gene_context_end http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_context_end gene record-internal -GeneRecordClasses.GeneRecordClass.context_start http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute context_start gene record-internal -GeneRecordClasses.GeneRecordClass.context_end http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute context_end gene record-internal -GeneRecordClasses.GeneRecordClass.start_min http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute start_min gene record-internal -GeneRecordClasses.GeneRecordClass.end_max http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute end_max gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.gene_start_min http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_start_min gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.gene_end_max http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_end_max gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.protein_gtracks http://edamontology.org/topic_0160 Sequence sites, features and motifs TranscriptRecordClasses.TranscriptRecordClass attribute protein_gtracks transcript record -TranscriptRecordClasses.TranscriptRecordClass.JBrowse http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute JBrowse gene results record -TranscriptRecordClasses.TranscriptRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute source_id gene record -GeneRecordClasses.GeneRecordClass.source_id http://edamontology.org/topic_0219 annot and cur GeneRecordClasses.GeneRecordClass attribute source_id gene record-internal download -GeneRecordClasses.GeneRecordClass.sequence_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute sequence_id gene results record-internal download -TranscriptRecordClasses.TranscriptRecordClass.sequence_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute sequence_id gene results download -GeneRecordClasses.GeneRecordClass.chromosome GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute chromosome gene results record-internal download -TranscriptRecordClasses.TranscriptRecordClass.chromosome GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute chromosome gene results download -TranscriptRecordClasses.TranscriptRecordClass.organism http://edamontology.org/topic_0637 Taxonomy TranscriptRecordClasses.TranscriptRecordClass attribute organism gene results download -GeneRecordClasses.GeneRecordClass.organism http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass attribute organism gene results -GeneRecordClasses.GeneRecordClass.Taxonomy http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass table Taxonomy gene record -GeneRecordClasses.GeneRecordClass.ds_annotation_version http://edamontology.org/topic_0219 annotation GeneRecordClasses.GeneRecordClass attribute ds_annotation_version 1 record -GeneRecordClasses.GeneRecordClass.attribution_partial http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass attribute attribution_partial record-internal -GeneRecordClasses.GeneRecordClass.dataset_id http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass attribute dataset_id record-internal -GeneRecordClasses.GeneRecordClass.attribution http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass attribute attribution record-internal - -TranscriptRecordClasses.TranscriptRecordClass.gene_source_id http://edamontology.org/topic_0219 annot and cur TranscriptRecordClasses.TranscriptRecordClass attribute gene_source_id gene record download -TranscriptRecordClasses.TranscriptRecordClass.gene_product http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute gene_product gene results record download -GeneRecordClasses.GeneRecordClass.product http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute product gene results record-internal download -TranscriptRecordClasses.TranscriptRecordClass.gene_type http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_type gene results record download -GeneRecordClasses.GeneRecordClass.gene_type http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute gene_type gene record-internal download -GeneRecordClasses.GeneRecordClass.type_with_pseudo http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute type_with_pseudo gene results record-internal download -GeneRecordClasses.GeneRecordClass.gene_ebi_biotype http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute gene_ebi_biotype gene record-internal -GeneRecordClasses.GeneRecordClass.location_text http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute location_text gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute location_text transcript results download -TranscriptRecordClasses.TranscriptRecordClass.gene_location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute gene_location_text gene results download -GeneRecordClasses.GeneRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute location_text gene record-internal -GeneRecordClasses.GeneRecordClass.strand_plus_minus GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute strand_plus_minus gene record-internal -GeneRecordClasses.GeneRecordClass.genome_status http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute genome_status gene record-internal -GeneRecordClasses.GeneRecordClass.data_release_policy http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute data_release_policy gene record-internal -GeneRecordClasses.GeneRecordClass.num_user_comments http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute num_user_comments gene record-internal -GeneRecordClasses.GeneRecordClass.show_apollo http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute show_apollo gene record-internal -GeneRecordClasses.GeneRecordClass.special_link http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute special_link gene record-internal -GeneRecordClasses.GeneRecordClass.user_comment_link_url http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute user_comment_link_url gene record-internal -GeneRecordClasses.GeneRecordClass.apollo_ident http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute apollo_ident gene record-internal -GeneRecordClasses.GeneRecordClass.organism_full http://www.w3.org/2002/07/owl#Thing MetaTableKey GeneRecordClasses.GeneRecordClass attribute organism_full gene record-internal download -GeneRecordClasses.GeneRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass attribute organism_text gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.gene_name http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute gene_name gene results record download -TranscriptRecordClasses.TranscriptRecordClass.gene_exon_count http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_exon_count gene results record download -GeneRecordClasses.GeneRecordClass.name http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute name gene 1 results record download -GeneRecordClasses.GeneRecordClass.exon_count http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute exon_count gene 1 results record download -GeneRecordClasses.GeneRecordClass.apolloHelp http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute apolloHelp gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.is_pseudo http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute is_pseudo transcript results record download -GeneRecordClasses.GeneRecordClass.is_pseudo http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute is_pseudo gene results record-internal download -TranscriptRecordClasses.TranscriptRecordClass.gene_transcript_count http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_transcript_count gene results record download -GeneRecordClasses.GeneRecordClass.transcript_count http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute transcript_count gene 1 results record -GeneRecordClasses.GeneRecordClass.gene_gff_link http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute gene_gff_link gene 1 record -GeneRecordClasses.GeneRecordClass.representative_transcript http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute representative_transcript gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.representative_transcript http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute representative_transcript gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.is_deprecated http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute is_deprecated gene results download -GeneRecordClasses.GeneRecordClass.is_deprecated http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute is_deprecated gene download -TranscriptRecordClasses.TranscriptRecordClass.gene_ortholog_number http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute gene_ortholog_number gene results download -TranscriptRecordClasses.TranscriptRecordClass.gene_paralog_number http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute gene_paralog_number gene results download -TranscriptRecordClasses.TranscriptRecordClass.gene_orthomcl_name http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute gene_orthomcl_name gene download -TranscriptRecordClasses.TranscriptRecordClass.orthomcl_link http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute orthomcl_link gene results -GeneRecordClasses.GeneRecordClass.ec_number_warning http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ec_number_warning gene record-internal -GeneRecordClasses.GeneRecordClass.ec_num_warn http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ec_num_warn gene record-internal -GeneRecordClasses.GeneRecordClass.ec_inferred_description http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ec_inferred_description gene record-internal -GeneRecordClasses.GeneRecordClass.alphafold_table_help http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass attribute alphafold_table_help gene record-internal -TranscriptRecordClasses.TranscriptRecordClass.gene_total_hts_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_total_hts_snps gene 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsynonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_nonsynonymous_snps gene 4 results record download -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_synonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_synonymous_snps gene 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_noncoding_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_noncoding_snps gene 2 results record download -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_stop_codon_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_stop_codon_snps gene 5 results record download -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsyn_syn_ratio http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_nonsyn_syn_ratio gene 3 results record download -TranscriptRecordClasses.TranscriptRecordClass.uniprot_ids http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute uniprot_ids transcript download - -GeneRecordClasses.GeneRecordClass.ortholog_overview http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ortholog_overview gene record download -GeneRecordClasses.GeneRecordClass.ortholog_number http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ortholog_number gene results download -GeneRecordClasses.GeneRecordClass.paralog_number http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute paralog_number gene results download -GeneRecordClasses.GeneRecordClass.orthomcl_link http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute orthomcl_link gene results record download -GeneRecordClasses.GeneRecordClass.show_strains http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute show_strains gene record-internal -GeneRecordClasses.GeneRecordClass.total_hts_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute total_hts_snps gene 1 results record download -GeneRecordClasses.GeneRecordClass.hts_nonsynonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_nonsynonymous_snps gene 1 results record download -GeneRecordClasses.GeneRecordClass.hts_synonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_synonymous_snps gene 1 results record download -GeneRecordClasses.GeneRecordClass.hts_noncoding_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_noncoding_snps gene 1 results record download -GeneRecordClasses.GeneRecordClass.hts_stop_codon_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_stop_codon_snps gene 1 results record download -GeneRecordClasses.GeneRecordClass.hts_nonsyn_syn_ratio http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_nonsyn_syn_ratio gene 1 results record download -GeneRecordClasses.GeneRecordClass.uniprot_id http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute uniprot_id gene -GeneRecordClasses.GeneRecordClass.uniprot_id_internal http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute uniprot_id_internal gene -TranscriptRecordClasses.TranscriptRecordClass.uniprot_links http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute uniprot_links transcript results -GeneRecordClasses.GeneRecordClass.uniprot_link http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute uniprot_link transcript results download -TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_id http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute gene_entrez_id transcript download -TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_link http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute gene_entrez_link transcript results -GeneRecordClasses.GeneRecordClass.entrez_id http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute entrez_id gene -GeneRecordClasses.GeneRecordClass.entrez_link http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute entrez_link gene results download -TranscriptRecordClasses.TranscriptRecordClass.transcript_product http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute transcript_product transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.ApolloTranscriptProduct http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute apollo_transcript_description transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.apollo_link_out http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute apollo_link_out transcript results -TranscriptRecordClasses.TranscriptRecordClass.transcript_length http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute transcript_length transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.exon_count http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute exon_count transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.five_prime_utr_length http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute five_prime_utr_length transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.three_prime_utr_length http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute three_prime_utr_length transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.strand http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute strand transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.protein_length http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute protein_length transcript 1 results record download -TranscriptRecordClasses.TranscriptRecordClass.cds_length http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute cds_length transcript 2 results record download -TranscriptRecordClasses.TranscriptRecordClass.genomic_sequence_length GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute genomic_sequence_length transcript 2 results record download -TranscriptRecordClasses.TranscriptRecordClass.tm_count http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute tm_count transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.molecular_weight http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute molecular_weight transcript 4 results record download -TranscriptRecordClasses.TranscriptRecordClass.isoelectric_point http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute isoelectric_point transcript 5 results record download - - -TranscriptRecordClasses.TranscriptRecordClass.cdd_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute cdd_id transcript 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.cdd_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute cdd_description transcript 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.gene3d_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute gene3d_id transcript 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.gene3d_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute gene3d_description transcript 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.hamap_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute hamap_id transcript 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.hamap_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute hamap_description transcript 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.ncbifam_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute ncbifam_id transcript 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.ncbifam_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute ncbifam_description transcript 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.panther_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute panther_id transcript 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.panther_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute panther_description transcript 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.pfam_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pfam_id transcript 8 results record download -TranscriptRecordClasses.TranscriptRecordClass.pfam_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pfam_description transcript 9 results record download -TranscriptRecordClasses.TranscriptRecordClass.pirsf_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pirsf_id transcript 10 results record download -TranscriptRecordClasses.TranscriptRecordClass.pirsf_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pirsf_description transcript 11 results record download -TranscriptRecordClasses.TranscriptRecordClass.prints_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prints_id transcript 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.prints_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prints_description transcript 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prositeprofiles_id transcript 12 results record download -TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prositeprofiles_description transcript 13 results record download -TranscriptRecordClasses.TranscriptRecordClass.sfld_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute sfld_id transcript 6 results record download -TranscriptRecordClasses.TranscriptRecordClass.sfld_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute sfld_description transcript 7 results record download -TranscriptRecordClasses.TranscriptRecordClass.smart_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute smart_id transcript 14 results record download -TranscriptRecordClasses.TranscriptRecordClass.smart_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute smart_description transcript 15 results record download -TranscriptRecordClasses.TranscriptRecordClass.superfamily_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute superfamily_id transcript 16 results record download -TranscriptRecordClasses.TranscriptRecordClass.superfamily_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute superfamily_description transcript 17 results record download -TranscriptRecordClasses.TranscriptRecordClass.interprofamily_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute interprofamily_id transcript 18 results record download -TranscriptRecordClasses.TranscriptRecordClass.interprofamily_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute interprofamily_description transcript 19 results record download -TranscriptRecordClasses.TranscriptRecordClass.signalp_41_probability http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute signalp_41_probability transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.signalp_50_probability http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute signalp_50_probability transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.signalp_60_probability http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute signalp_60_probability transcript results record download -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_function transcript results download -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_process transcript results download -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_component transcript results download -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_function transcript results download -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_process transcript results download -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_component transcript results download -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_id_function transcript results download -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_id_process transcript results download -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_id_component transcript results download -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_id_function transcript results download -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_id_process transcript results download -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_id_component transcript results download -TranscriptRecordClasses.TranscriptRecordClass.ec_numbers http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute ec_numbers transcript results download -TranscriptRecordClasses.TranscriptRecordClass.ec_numbers_derived http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute ec_numbers_derived transcript results download download -TranscriptRecordClasses.TranscriptRecordClass.gene_previous_ids http://edamontology.org/topic_0219 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute gene_previous_ids transcript results record download -GeneRecordClasses.GeneRecordClass.previous_ids http://edamontology.org/topic_0219 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute previous_ids transcript results download -TranscriptRecordClasses.TranscriptRecordClass.transcripts_found_per_gene http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute transcripts_found_per_gene transcript -TranscriptRecordClasses.TranscriptRecordClass.transcript_index_per_gene http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute transcript_index_per_gene transcript -TranscriptRecordClasses.TranscriptRecordClass.has_missing_transcripts http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute has_missing_transcripts transcript -TranscriptRecordClasses.TranscriptRecordClass.transcript_sequence http://edamontology.org/data_2977 Nucleic Acid Sequence TranscriptRecordClasses.TranscriptRecordClass attribute transcript_sequence transcript download -TranscriptRecordClasses.TranscriptRecordClass.protein_sequence http://edamontology.org/data_2976 Protein Sequence TranscriptRecordClasses.TranscriptRecordClass attribute protein_sequence transcript download -TranscriptRecordClasses.TranscriptRecordClass.prot_seq_warn http://edamontology.org/data_2976 Protein Sequence TranscriptRecordClasses.TranscriptRecordClass attribute prot_seq_warn transcript -TranscriptRecordClasses.TranscriptRecordClass.cds http://edamontology.org/data_2977 Nucleic Acid Sequence TranscriptRecordClasses.TranscriptRecordClass attribute cds transcript download -DynSpanRecordClasses.DynSpanRecordClass.Genes http://edamontology.org/topic_0114 Gene Structure DynSpanRecordClasses.DynSpanRecordClass table Genes results record download -DynSpanRecordClasses.DynSpanRecordClass.ORFs CodingPotentialCategory CodingPotentialCategory DynSpanRecordClasses.DynSpanRecordClass table ORFs download -DynSpanRecordClasses.DynSpanRecordClass.SNPs http://edamontology.org/topic_2885 DNA Polymorphism DynSpanRecordClasses.DynSpanRecordClass table SNPs download -DynSpanRecordClasses.DynSpanRecordClass.ESTs http://edamontology.org/topic_3308 Transcriptomics DynSpanRecordClasses.DynSpanRecordClass table ESTs download -DynSpanRecordClasses.DynSpanRecordClass.primary_key GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute primary_key results record-internal -DynSpanRecordClasses.DynSpanRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation DynSpanRecordClasses.DynSpanRecordClass attribute record_overview record-internal -DynSpanRecordClasses.DynSpanRecordClass.overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute overview -DynSpanRecordClasses.DynSpanRecordClass.otherInfo GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute otherInfo results record download -DynSpanRecordClasses.DynSpanRecordClass.seq_source_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute seq_source_id results record-internal download -DynSpanRecordClasses.DynSpanRecordClass.start_min GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute start_min results record-internal download -DynSpanRecordClasses.DynSpanRecordClass.end_max GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute end_max results record-internal download -DynSpanRecordClasses.DynSpanRecordClass.strand GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute strand results record-internal download -DynSpanRecordClasses.DynSpanRecordClass.length GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute length results record-internal -DynSpanRecordClasses.DynSpanRecordClass.spanGbrowseImageUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs DynSpanRecordClasses.DynSpanRecordClass attribute spanGbrowseImageUrl record -DynSpanRecordClasses.DynSpanRecordClass.jbrowseUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs DynSpanRecordClasses.DynSpanRecordClass attribute jbrowseUrl record-internal -DynSpanRecordClasses.DynSpanRecordClass.organism http://edamontology.org/topic_0637 Taxonomy DynSpanRecordClasses.DynSpanRecordClass attribute organism results record-internal download -DynSpanRecordClasses.DynSpanRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute location_text results record-internal download -SequenceRecordClasses.SequenceRecordClass.SequencePieces http://edamontology.org/topic_0196 Sequence Assembly SequenceRecordClasses.SequenceRecordClass table SequencePieces results record download -SequenceRecordClasses.SequenceRecordClass.Aliases http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass table Aliases results record download -SequenceRecordClasses.SequenceRecordClass.Centromere http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass table Centromere 3 results record download -SequenceRecordClasses.SequenceRecordClass.SequenceComments http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass table SequenceComments results record download -SequenceRecordClasses.SequenceRecordClass.Repeats http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass table Repeats results download -SequenceRecordClasses.SequenceRecordClass.TandemRepeats http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass table TandemRepeats results download -SequenceRecordClasses.SequenceRecordClass.LowComplexity http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass table LowComplexity results download -SequenceRecordClasses.SequenceRecordClass.MercatorTable http://edamontology.org/topic_0159 Sequence Comparison SequenceRecordClasses.SequenceRecordClass table MercatorTable results record-internal -SequenceRecordClasses.SequenceRecordClass.SequenceGffDbxrefs http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass table SequenceGffDbxrefs -SequenceRecordClasses.SequenceRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass attribute source_id record-internal download -SequenceRecordClasses.SequenceRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass attribute primary_key results record-internal -SequenceRecordClasses.SequenceRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute record_overview record-internal -SequenceRecordClasses.SequenceRecordClass.overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute overview -SequenceRecordClasses.SequenceRecordClass.project_id GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute project_id record-internal -SequenceRecordClasses.SequenceRecordClass.lc_project_id GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute lc_project_id record-internal -SequenceRecordClasses.SequenceRecordClass.organism http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass attribute organism results record-internal download -SequenceRecordClasses.SequenceRecordClass.Taxonomy http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass table Taxonomy record -SequenceRecordClasses.SequenceRecordClass.dnaContextUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute dnaContextUrl 1 record -SequenceRecordClasses.SequenceRecordClass.jbrowseUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute jbrowseUrl 1 record-internal -SequenceRecordClasses.SequenceRecordClass.JBrowse http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute JBrowse 3 results record-internal download -SequenceRecordClasses.SequenceRecordClass.sequence_retrieval http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute sequence_retrieval 3 results record download -SequenceRecordClasses.SequenceRecordClass.download_link http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute download_link results record download -SequenceRecordClasses.SequenceRecordClass.chromosome GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute chromosome results record-internal -SequenceRecordClasses.SequenceRecordClass.description GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute description record-internal download -SequenceRecordClasses.SequenceRecordClass.a_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute a_count results record-internal download -SequenceRecordClasses.SequenceRecordClass.c_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute c_count results record-internal download -SequenceRecordClasses.SequenceRecordClass.g_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute g_count results record-internal download -SequenceRecordClasses.SequenceRecordClass.t_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute t_count results record-internal download -SequenceRecordClasses.SequenceRecordClass.other_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute other_count results record-internal download -SequenceRecordClasses.SequenceRecordClass.formatted_length GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute formatted_length results record-internal download -SequenceRecordClasses.SequenceRecordClass.at_percent http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute at_percent results record-internal -SequenceRecordClasses.SequenceRecordClass.organism_full http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass attribute organism_full gene record-internal -SequenceRecordClasses.SequenceRecordClass.chromosome_order_num GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute chromosome_order_num results record-internal -SequenceRecordClasses.SequenceRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass attribute formatted_organism record-internal download -SequenceRecordClasses.SequenceRecordClass.sequence_description http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute sequence_description results record-internal download -SequenceRecordClasses.SequenceRecordClass.genbank_accession http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass attribute genbank_accession download -SequenceRecordClasses.SequenceRecordClass.sequence_type GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute sequence_type results record-internal download -SequenceRecordClasses.SequenceRecordClass.has_msa http://edamontology.org/topic_0159 Sequence Comparison SequenceRecordClasses.SequenceRecordClass attribute has_msa download -SequenceRecordClasses.SequenceRecordClass.gene_count http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute gene_count results record-internal download -SequenceRecordClasses.SequenceRecordClass.description http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute description results record-internal download -SequenceRecordClasses.SequenceRecordClass.is_annotated http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute is_annotated download -SequenceRecordClasses.SequenceRecordClass.release_policy http://edamontology.org/topic_3068 Literature and Reference SequenceRecordClasses.SequenceRecordClass attribute release_policy record-internal -SequenceRecordClasses.SequenceRecordClass.attribution http://edamontology.org/topic_3068 Literature and Reference SequenceRecordClasses.SequenceRecordClass attribute attribution record-internal download -SequenceRecordClasses.SequenceRecordClass.user_comment_link_url http://www.w3.org/2002/07/owl#Thing thing SequenceRecordClasses.SequenceRecordClass attribute user_comment_link_url record-internal -EstRecordClasses.EstRecordClass.ReferenceInfo http://edamontology.org/topic_3068 Literature and Reference EstRecordClasses.EstRecordClass table ReferenceInfo results record download -EstRecordClasses.EstRecordClass.AlignmentInfo http://edamontology.org/topic_0159 Sequence Comparison EstRecordClasses.EstRecordClass table AlignmentInfo results record download -EstRecordClasses.EstRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping EstRecordClasses.EstRecordClass attribute primary_key results record-internal -EstRecordClasses.EstRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute record_overview record-internal -EstRecordClasses.EstRecordClass.organism http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute organism results record-internal -EstRecordClasses.EstRecordClass.overview http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute overview record-internal -EstRecordClasses.EstRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping EstRecordClasses.EstRecordClass attribute source_id record-internal -EstRecordClasses.EstRecordClass.a_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute a_count results record download -EstRecordClasses.EstRecordClass.c_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute c_count results record download -EstRecordClasses.EstRecordClass.g_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute g_count results record download -EstRecordClasses.EstRecordClass.t_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute t_count results record download -EstRecordClasses.EstRecordClass.other_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute other_count results record download -EstRecordClasses.EstRecordClass.length GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory EstRecordClasses.EstRecordClass attribute length results record-internal download -EstRecordClasses.EstRecordClass.dbest_name http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute dbest_name results record-internal download -EstRecordClasses.EstRecordClass.vector http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute vector results record-internal download -EstRecordClasses.EstRecordClass.stage http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute stage results record-internal download -EstRecordClasses.EstRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute organism_text record-internal download -EstRecordClasses.EstRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute formatted_organism record-internal -EstRecordClasses.EstRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute ncbi_tax_id record-internal download -EstRecordClasses.EstRecordClass.sequence http://edamontology.org/data_2977 Nucleic Acid Sequence EstRecordClasses.EstRecordClass attribute sequence record download -EstRecordClasses.EstRecordClass.sequence_length http://edamontology.org/data_2977 Nucleic Acid Sequence EstRecordClasses.EstRecordClass attribute sequence_length 1 record download -JunctionRecordClasses.JunctionRecordClass.SampleInfo http://edamontology.org/topic_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass table SampleInfo results record download -##JunctionRecordClasses.JunctionRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping JunctionRecordClasses.JunctionRecordClass attribute primary_key results record-internal -##JunctionRecordClasses.JunctionRecordClass.intron_feature_id http://edamontology.org/data_3345 Data identity and mapping JunctionRecordClasses.JunctionRecordClass attribute intron_feature_id record-internal download -JunctionRecordClasses.JunctionRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation JunctionRecordClasses.JunctionRecordClass attribute record_overview record-internal -JunctionRecordClasses.JunctionRecordClass.location http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute location record download -JunctionRecordClasses.JunctionRecordClass.sequence_source_id http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute sequence_source_id record download -JunctionRecordClasses.JunctionRecordClass.segment_start http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute segment_start record download -JunctionRecordClasses.JunctionRecordClass.segment_end http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute segment_end record download -JunctionRecordClasses.JunctionRecordClass.is_reversed http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute is_reversed record download -JunctionRecordClasses.JunctionRecordClass.total_unique http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute total_unique record download -JunctionRecordClasses.JunctionRecordClass.total_isrpm http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute total_isrpm record download -JunctionRecordClasses.JunctionRecordClass.gene_source_id http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute gene_source_id record download -JunctionRecordClasses.JunctionRecordClass.annotated_intron http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute annotated_intron record download -JunctionRecordClasses.JunctionRecordClass.percent_max http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute record download -##JunctionRecordClasses.JunctionRecordClass.# http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute # record download -LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.SampleInfo http://edamontology.org/topic_0080 Gene Models LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass table SampleInfo results record download -LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.record_overview http://edamontology.org/topic_0080 Gene Models LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass attribute record_overview record-internal -PopsetRecordClasses.PopsetRecordClass.Reference http://edamontology.org/topic_3068 Literature and Reference PopsetRecordClasses.PopsetRecordClass table Reference results record download -PopsetRecordClasses.PopsetRecordClass.GeneOverlap http://edamontology.org/topic_0159 Sequence Comparison PopsetRecordClasses.PopsetRecordClass table GeneOverlap results record download -PopsetRecordClasses.PopsetRecordClass.PopsetComments http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table PopsetComments results record download -PopsetRecordClasses.PopsetRecordClass.organismTable http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass table organismTable results download -PopsetRecordClasses.PopsetRecordClass.descriptionTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table descriptionTable results download -PopsetRecordClasses.PopsetRecordClass.productTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table productTable results download -PopsetRecordClasses.PopsetRecordClass.strainTable http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass table strainTable results download -PopsetRecordClasses.PopsetRecordClass.hostTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table hostTable results download -PopsetRecordClasses.PopsetRecordClass.noteTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table noteTable results download -PopsetRecordClasses.PopsetRecordClass.isolation_sourceTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table isolation_sourceTable results download -PopsetRecordClasses.PopsetRecordClass.geographic_locationTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table geographic_locationTable results download -PopsetRecordClasses.PopsetRecordClass.primary_key http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute primary_key results record-internal -PopsetRecordClasses.PopsetRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute record_overview record-internal -PopsetRecordClasses.PopsetRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping PopsetRecordClasses.PopsetRecordClass attribute source_id download -PopsetRecordClasses.PopsetRecordClass.organism http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass attribute organism results record-internal download -PopsetRecordClasses.PopsetRecordClass.strain http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass attribute strain results record-internal download -PopsetRecordClasses.PopsetRecordClass.specific_host http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute specific_host 1 results record-internal download -PopsetRecordClasses.PopsetRecordClass.curated_isolation_source http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute curated_isolation_source 5 results record-internal download -PopsetRecordClasses.PopsetRecordClass.isolation_source http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute isolation_source 4 results record-internal download -PopsetRecordClasses.PopsetRecordClass.geographic_location http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute geographic_location 2 results record-internal download -PopsetRecordClasses.PopsetRecordClass.curated_geographic_location http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute curated_geographic_location 3 results record-internal download -PopsetRecordClasses.PopsetRecordClass.product http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute product 7 results record-internal download -PopsetRecordClasses.PopsetRecordClass.description http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute description 6 results record-internal download -PopsetRecordClasses.PopsetRecordClass.note http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute note download -PopsetRecordClasses.PopsetRecordClass.sequence http://edamontology.org/data_2977 Nucleic Acid Sequence PopsetRecordClasses.PopsetRecordClass attribute sequence record download -PopsetRecordClasses.PopsetRecordClass.sequence_length http://edamontology.org/data_2977 Nucleic Acid Sequence PopsetRecordClasses.PopsetRecordClass attribute sequence_length 1 record download -PopsetRecordClasses.PopsetRecordClass.user_comment_link_url http://www.w3.org/2002/07/owl#Thing thing PopsetRecordClasses.PopsetRecordClass attribute user_comment_link_url record-internal -OrfRecordClasses.OrfRecordClass.Locations GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass table Locations results record-internal download -OrfRecordClasses.OrfRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping OrfRecordClasses.OrfRecordClass attribute primary_key results -OrfRecordClasses.OrfRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation OrfRecordClasses.OrfRecordClass attribute record_overview record-internal -OrfRecordClasses.OrfRecordClass.organism http://edamontology.org/topic_0637 Taxonomy OrfRecordClasses.OrfRecordClass attribute organism results download -OrfRecordClasses.OrfRecordClass.orf_location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_location_text 2 results -OrfRecordClasses.OrfRecordClass.overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrfRecordClasses.OrfRecordClass attribute overview -OrfRecordClasses.OrfRecordClass.jbrowseTracks http://edamontology.org/topic_0160 Sequence sites, features and motifs OrfRecordClasses.OrfRecordClass attribute jbrowseTracks -OrfRecordClasses.OrfRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping OrfRecordClasses.OrfRecordClass attribute source_id download -OrfRecordClasses.OrfRecordClass.nas_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute nas_id 1 results download -OrfRecordClasses.OrfRecordClass.orf_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_start download -OrfRecordClasses.OrfRecordClass.orf_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_end download -OrfRecordClasses.OrfRecordClass.orf_start_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_start_text 3 results download -OrfRecordClasses.OrfRecordClass.orf_end_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_end_text 4 results download -OrfRecordClasses.OrfRecordClass.orf_strand GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_strand 5 results download -OrfRecordClasses.OrfRecordClass.orfGbrowseImageUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orfGbrowseImageUrl record -OrfRecordClasses.OrfRecordClass.jbrowseUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute jbrowseUrl record-internal -SnpRecordClasses.SnpRecordClass.context_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute context_start record-internal -SnpRecordClasses.SnpRecordClass.context_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute context_end record-internal -SnpRecordClasses.SnpRecordClass.align_context_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute align_context_start record-internal -SnpRecordClasses.SnpRecordClass.align_context_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute align_context_end record-internal -SnpRecordClasses.SnpRecordClass.snps_alignment_form GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute snps_alignment_form record -SnpRecordClasses.SnpRecordClass.lc_project_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute lc_project_id record-internal -SnpRecordClasses.SnpRecordClass.snpGbrowseImageUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute snpGbrowseImageUrl record -SnpRecordClasses.SnpRecordClass.jbrowseUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute jbrowseUrl record-internal -SnpChipRecordClasses.SnpChipRecordClass.snpChipGbrowseImageUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute snpChipGbrowseImageUrl record -SnpChipRecordClasses.SnpChipRecordClass.jbrowseUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute jbrowseUrl record-internal -SnpChipRecordClasses.SnpChipRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SnpChipRecordClasses.SnpChipRecordClass attribute record_overview record-internal -SnpChipRecordClasses.SnpChipRecordClass.context_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute context_start record-internal -SnpChipRecordClasses.SnpChipRecordClass.context_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute context_end record-internal -SnpChipRecordClasses.SnpChipRecordClass.lc_project_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute lc_project_id record-internal -SnpChipRecordClasses.SnpChipRecordClass.na_sequence_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute na_sequence_id record-internal download -OrfRecordClasses.OrfRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy OrfRecordClasses.OrfRecordClass attribute organism_text -OrfRecordClasses.OrfRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy OrfRecordClasses.OrfRecordClass attribute formatted_organism results download -OrfRecordClasses.OrfRecordClass.sequence http://edamontology.org/data_2976 Protein Sequence OrfRecordClasses.OrfRecordClass attribute sequence record download -OrfRecordClasses.OrfRecordClass.sequence_length http://edamontology.org/data_2976 Protein Sequence OrfRecordClasses.OrfRecordClass attribute sequence_length record -OrfRecordClasses.OrfRecordClass.attribution http://edamontology.org/topic_3068 Literature and Reference OrfRecordClasses.OrfRecordClass attribute attribution record-internal download -PathwayRecordClasses.PathwayRecordClass.CompoundsMetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table CompoundsMetabolicPathways record download -PathwayRecordClasses.PathwayRecordClass.PathwayReactionsXrefs http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayReactionsXrefs record -PathwayRecordClasses.PathwayRecordClass.PathwayGraphs http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayGraphs record-internal -PathwayRecordClasses.PathwayRecordClass.PathwayNodes http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayNodes record-internal -PathwayRecordClasses.PathwayRecordClass.PathwayEdges http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayEdges record-internal -PathwayRecordClasses.PathwayRecordClass.ECNumberOrganismMap http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table ECNumberOrganismMap -##PathwayRecordClasses.PathwayRecordClass.CompoundLabel http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table CompoundLabel results record download -PathwayRecordClasses.PathwayRecordClass.source_id http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute source_id record-internal -PathwayRecordClasses.PathwayRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation PathwayRecordClasses.PathwayRecordClass attribute record_overview record-internal -PathwayRecordClasses.PathwayRecordClass.project_id http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute project_id record-internal download -PathwayRecordClasses.PathwayRecordClass.source http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute source results record-internal download -PathwayRecordClasses.PathwayRecordClass.primary_key http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute primary_key record-internal download -PathwayRecordClasses.PathwayRecordClass.name http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute name results record-internal download -PathwayRecordClasses.PathwayRecordClass.total_enzyme_count http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute total_enzyme_count results record-internal download -PathwayRecordClasses.PathwayRecordClass.total_compound_count http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute total_compound_count results record-internal download -PathwayRecordClasses.PathwayRecordClass.url http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute url record-internal -##PathwayRecordClasses.PathwayRecordClass.external_url http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute external_url record -PathwayRecordClasses.PathwayRecordClass.drawing http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute drawing record -PathwayRecordClasses.PathwayRecordClass.external_db_name http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute external_db_name record-internal -PathwayRecordClasses.PathwayRecordClass.external_db_version http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute external_db_version record-internal download -SnpRecordClasses.SnpRecordClass.HTSStrains http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass table HTSStrains 3 record -SnpRecordClasses.SnpRecordClass.AlleleCount http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass table AlleleCount 1 record -SnpRecordClasses.SnpRecordClass.CountrySummary http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass table CountrySummary 2 record download -SnpRecordClasses.SnpRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping SnpRecordClasses.SnpRecordClass attribute primary_key results -SnpRecordClasses.SnpRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SnpRecordClasses.SnpRecordClass attribute record_overview record-internal -SnpRecordClasses.SnpRecordClass.organism http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute organism -SnpRecordClasses.SnpRecordClass.snp_overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SnpRecordClasses.SnpRecordClass attribute snp_overview -SnpRecordClasses.SnpRecordClass.gene_context http://edamontology.org/topic_0160 Sequence sites, features and motifs SnpRecordClasses.SnpRecordClass attribute gene_context -SnpRecordClasses.SnpRecordClass.seq_source_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute seq_source_id record-internal download -SnpRecordClasses.SnpRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute location_text download -SnpRecordClasses.SnpRecordClass.snp_location GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute snp_location results record-internal download -SnpRecordClasses.SnpRecordClass.chromosome_order_num GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute chromosome_order_num download -SnpRecordClasses.SnpRecordClass.location GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute location -SnpRecordClasses.SnpRecordClass.reference_strain http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute reference_strain -SnpRecordClasses.SnpRecordClass.reference_na http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute reference_na -SnpRecordClasses.SnpRecordClass.reference_aa http://edamontology.org/topic_2886 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute reference_aa -SnpRecordClasses.SnpRecordClass.ref_aa_with_position http://edamontology.org/topic_2887 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute ref_aa_with_position record-internal download -SnpRecordClasses.SnpRecordClass.lflank http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute lflank results record-internal download -SnpRecordClasses.SnpRecordClass.allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute allele results record-internal download -SnpRecordClasses.SnpRecordClass.rflank http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute rflank results record-internal download -SnpRecordClasses.SnpRecordClass.snp_context http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute snp_context results record-internal download -SnpRecordClasses.SnpRecordClass.sampleId http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute sampleId results record-internal download -SnpRecordClasses.SnpRecordClass.snp_context_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute snp_context_gene_strand results record-internal download -SnpRecordClasses.SnpRecordClass.gene_source_id http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute gene_source_id download record-internal -SnpRecordClasses.SnpRecordClass.linkedGeneId http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute linkedGeneId results record-internal -SnpRecordClasses.SnpRecordClass.gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute gene_strand results record-internal download -SnpRecordClasses.SnpRecordClass.is_coding http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute is_coding results record-internal download -SnpRecordClasses.SnpRecordClass.position_in_CDS http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute position_in_CDS results record-internal download -SnpRecordClasses.SnpRecordClass.position_in_protein http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute position_in_protein results record-internal download -SnpRecordClasses.SnpRecordClass.has_nonsynonymous_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute has_nonsynonymous_allele results record-internal download -SnpRecordClasses.SnpRecordClass.lflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute lflank_gene_strand results record-internal download -SnpRecordClasses.SnpRecordClass.allele_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute allele_gene_strand results record-internal download -SnpRecordClasses.SnpRecordClass.rflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute rflank_gene_strand results record-internal download -SnpRecordClasses.SnpRecordClass.major_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_allele_frequency results record-internal download -SnpRecordClasses.SnpRecordClass.minor_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_allele_frequency results record-internal download -SnpRecordClasses.SnpRecordClass.major_allele_and_freq http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_allele_and_freq record-internal download -SnpRecordClasses.SnpRecordClass.minor_allele_and_freq http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_allele_and_freq record-internal download -SnpRecordClasses.SnpRecordClass.distinct_strain_count http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute distinct_strain_count results record-internal download -SnpRecordClasses.SnpRecordClass.major_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_allele results record-internal download -SnpRecordClasses.SnpRecordClass.minor_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_allele results record-internal download -SnpRecordClasses.SnpRecordClass.major_product http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_product results record-internal download -SnpRecordClasses.SnpRecordClass.minor_product http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_product results record-internal download -SnpRecordClasses.SnpRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute organism_text record-internal -SnpRecordClasses.SnpRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute formatted_organism results record-internal -SnpRecordClasses.SnpRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute ncbi_tax_id record-internal -SnpChipRecordClasses.SnpChipRecordClass.StrainsWithMetaData http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass table StrainsWithMetaData 3 record download -SnpChipRecordClasses.SnpChipRecordClass.OtherSNPs http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass table OtherSNPs 2 record download -SnpChipRecordClasses.SnpChipRecordClass.CountrySummary http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass table CountrySummary 1 record download -SnpChipRecordClasses.SnpChipRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping SnpChipRecordClasses.SnpChipRecordClass attribute primary_key results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.organism http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute organism -SnpChipRecordClasses.SnpChipRecordClass.snp_overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SnpChipRecordClasses.SnpChipRecordClass attribute snp_overview -SnpChipRecordClasses.SnpChipRecordClass.gene_context http://edamontology.org/topic_0160 Sequence sites, features and motifs SnpChipRecordClasses.SnpChipRecordClass attribute gene_context -SnpChipRecordClasses.SnpChipRecordClass.type http://edamontology.org/topic_0219 Curation and Annotation SnpChipRecordClasses.SnpChipRecordClass attribute type -SnpChipRecordClasses.SnpChipRecordClass.seq_source_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute seq_source_id download -SnpChipRecordClasses.SnpChipRecordClass.start_min_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute start_min_text download -SnpChipRecordClasses.SnpChipRecordClass.snp_location GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute snp_location results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.chromosome_order_num GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute chromosome_order_num record-internal download -SnpChipRecordClasses.SnpChipRecordClass.start_min GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute start_min -SnpChipRecordClasses.SnpChipRecordClass.reference_strain http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute reference_strain -SnpChipRecordClasses.SnpChipRecordClass.reference_na http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute reference_na -SnpChipRecordClasses.SnpChipRecordClass.reference_aa http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute reference_aa download -SnpChipRecordClasses.SnpChipRecordClass.lflank http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute lflank results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute allele results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.rflank http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute rflank results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.gene_source_id http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute gene_source_id -SnpChipRecordClasses.SnpChipRecordClass.linkedGeneId http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute linkedGeneId results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.gene_strand http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute gene_strand results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.is_coding http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute is_coding results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.position_in_CDS http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute position_in_CDS results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.position_in_protein http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute position_in_protein results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.has_nonsynonymous_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute has_nonsynonymous_allele results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.lflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute lflank_gene_strand results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.allele_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute allele_gene_strand results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.rflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute rflank_gene_strand results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.major_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_allele_frequency results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.minor_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_allele_frequency results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.major_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_allele results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.major_product http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_product results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.minor_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_allele results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.minor_product http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_product results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.distinct_strain_count http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute distinct_strain_count results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.snp_context http://edamontology.org/topic_2886 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute snp_context results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.snp_context_gene_strand http://edamontology.org/topic_2887 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute snp_context_gene_strand results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.major_allele_and_freq http://edamontology.org/topic_2888 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_allele_and_freq record-internal download -SnpChipRecordClasses.SnpChipRecordClass.minor_allele_and_freq http://edamontology.org/topic_2889 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_allele_and_freq record-internal download -SnpChipRecordClasses.SnpChipRecordClass.ref_aa_with_position http://edamontology.org/topic_2890 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute ref_aa_with_position results record-internal download -SnpChipRecordClasses.SnpChipRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute organism_text record-internal -SnpChipRecordClasses.SnpChipRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute formatted_organism results record-internal -SnpChipRecordClasses.SnpChipRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute ncbi_tax_id download -CompoundRecordClasses.CompoundRecordClass.Properties http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Properties results record download -CompoundRecordClasses.CompoundRecordClass.IupacNames http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table IupacNames results record download -CompoundRecordClasses.CompoundRecordClass.Definition http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Definition results record download -CompoundRecordClasses.CompoundRecordClass.SecondaryIds http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table SecondaryIds results record download -CompoundRecordClasses.CompoundRecordClass.Synonyms http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Synonyms results record download -CompoundRecordClasses.CompoundRecordClass.CompoundName http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table CompoundName Record-internal -CompoundRecordClasses.CompoundRecordClass.CompoundsMetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways CompoundRecordClasses.CompoundRecordClass table CompoundsMetabolicPathways 2 results record download -CompoundRecordClasses.CompoundRecordClass.MetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways CompoundRecordClasses.CompoundRecordClass table MetabolicPathways 1 results record download -CompoundRecordClasses.CompoundRecordClass.Structures http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Structures record -CompoundRecordClasses.CompoundRecordClass.MassSpecGraphs http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table MassSpecGraphs results record download -CompoundRecordClasses.CompoundRecordClass.MassSpecGraphsDataTable http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table MassSpecGraphsDataTable record-internal download - - - -CompoundRecordClasses.CompoundRecordClass.primary_key http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute primary_key results -CompoundRecordClasses.CompoundRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation CompoundRecordClasses.CompoundRecordClass attribute record_overview record-internal -CompoundRecordClasses.CompoundRecordClass.overview http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute overview -CompoundRecordClasses.CompoundRecordClass.definition http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute definition results download -CompoundRecordClasses.CompoundRecordClass.formula http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute formula results download -CompoundRecordClasses.CompoundRecordClass.secondary_ids http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute secondary_ids results download -CompoundRecordClasses.CompoundRecordClass.name http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute name results download -CompoundRecordClasses.CompoundRecordClass.synonyms http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute synonyms -CompoundRecordClasses.CompoundRecordClass.default_structure http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute default_structure record-internal - download -DatasourceRecordClasses.DatasourceRecordClass.Publications http://edamontology.org/topic_3068 Literature and Reference DatasourceRecordClasses.DatasourceRecordClass table Publications datasource record download -DatasourceRecordClasses.DatasourceRecordClass.References http://edamontology.org/topic_3068 Literature and Reference DatasourceRecordClasses.DatasourceRecordClass table References datasource record download -DatasourceRecordClasses.DatasourceRecordClass.Version http://edamontology.org/topic_0219 Curation and Annotation DatasourceRecordClasses.DatasourceRecordClass table Version datasource record download -OrganismRecordClasses.OrganismRecordClass.SequenceCounts http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass table SequenceCounts results record download -OrganismRecordClasses.OrganismRecordClass.GeneCounts http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass table GeneCounts results record -OrganismRecordClasses.OrganismRecordClass.GenomeSequencingAndAnnotationAttribution GenomicSequencePropertiesCategory Genomic Sequence Properties Category OrganismRecordClasses.OrganismRecordClass table GenomeSequencingAndAnnotationAttribution 4 results record -OrganismRecordClasses.OrganismRecordClass.primary_key http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute primary_key results download -OrganismRecordClasses.OrganismRecordClass.overview http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute overview -OrganismRecordClasses.OrganismRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute record_overview record-internal -OrganismRecordClasses.OrganismRecordClass.URLGenomeFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLGenomeFasta download -OrganismRecordClasses.OrganismRecordClass.URLtranscriptFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLtranscriptFasta download -OrganismRecordClasses.OrganismRecordClass.URLcdsFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLcdsFasta download -OrganismRecordClasses.OrganismRecordClass.URLproteinFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLproteinFasta download - -OrganismRecordClasses.OrganismRecordClass.URLgff http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute URLgff download - -OrganismRecordClasses.OrganismRecordClass.strain http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute strain results record download -OrganismRecordClasses.OrganismRecordClass.contigCount GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute contigCount 3 results record download -OrganismRecordClasses.OrganismRecordClass.supercontigCount GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute supercontigCount 2 results record download -OrganismRecordClasses.OrganismRecordClass.chromosomeCount GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute chromosomeCount 1 results record download -OrganismRecordClasses.OrganismRecordClass.genecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute genecount record download -OrganismRecordClasses.OrganismRecordClass.genecount_number http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute genecount_number -OrganismRecordClasses.OrganismRecordClass.codinggenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute codinggenecount results record download -OrganismRecordClasses.OrganismRecordClass.pseudogenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute pseudogenecount results record download -OrganismRecordClasses.OrganismRecordClass.othergenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute othergenecount results record download -OrganismRecordClasses.OrganismRecordClass.ecnumbercount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute ecnumbercount results record download -OrganismRecordClasses.OrganismRecordClass.gocount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute gocount results record download -OrganismRecordClasses.OrganismRecordClass.popsetcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute popsetcount results record download -OrganismRecordClasses.OrganismRecordClass.rnaseqcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute rnaseqcount results record download -OrganismRecordClasses.OrganismRecordClass.chipchipgenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute chipchipgenecount results record download -OrganismRecordClasses.OrganismRecordClass.rtpcrcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute rtpcrcount results record download -OrganismRecordClasses.OrganismRecordClass.estcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute estcount results record download -OrganismRecordClasses.OrganismRecordClass.snpcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute snpcount results record download -OrganismRecordClasses.OrganismRecordClass.orthologcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute orthologcount results record download -OrganismRecordClasses.OrganismRecordClass.arraygenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute arraygenecount results record download -OrganismRecordClasses.OrganismRecordClass.proteomicscount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute proteomicscount results record download -OrganismRecordClasses.OrganismRecordClass.tfbscount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute tfbscount results record download -OrganismRecordClasses.OrganismRecordClass.communitycount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute communitycount results record download -OrganismRecordClasses.OrganismRecordClass.download_link http://edamontology.org/topic_0160 http://edamontology.org/data_0916 Gene report attribute download_link results record download -OrganismRecordClasses.OrganismRecordClass.organism_name http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute organism_name results -OrganismRecordClasses.OrganismRecordClass.species http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute species results record download -OrganismRecordClasses.OrganismRecordClass.is_annotated_genome http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute is_annotated_genome -OrganismRecordClasses.OrganismRecordClass.is_reference_strain http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute is_reference_strain results download -OrganismRecordClasses.OrganismRecordClass.organism http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute organism -OrganismRecordClasses.OrganismRecordClass.organism_full http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute organism_full gene record-internal -OrganismRecordClasses.OrganismRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute ncbi_tax_id download -OrganismRecordClasses.OrganismRecordClass.species_ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute species_ncbi_tax_id download -OrganismRecordClasses.OrganismRecordClass.ncbi_taxon_url http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute ncbi_taxon_url results record -OrganismRecordClasses.OrganismRecordClass.species_ncbi_taxon_url http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute species_ncbi_taxon_url results record -OrganismRecordClasses.OrganismRecordClass.genome_source GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute genome_source results download -OrganismRecordClasses.OrganismRecordClass.annotation_source GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute annotation_source results download -OrganismRecordClasses.OrganismRecordClass.project_id http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute project_id results download -OrganismRecordClasses.OrganismRecordClass.database_version http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute database_version -OrganismRecordClasses.OrganismRecordClass.busco_genome GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute busco_genome results download -OrganismRecordClasses.OrganismRecordClass.busco_protein GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute busco_protein results download -OrganismRecordClasses.OrganismRecordClass.busco_lineage_dataset GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute busco_lineage_dataset results download - -OrganismRecordClasses.OrganismRecordClass.megabps GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute megabps download -OrganismRecordClasses.OrganismRecordClass.megabpsurl GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute megabpsurl results -OrganismRecordClasses.OrganismRecordClass.genecounturl http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute genecounturl results record -OrganismRecordClasses.OrganismRecordClass.isOrganellar_flag http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute isOrganellar_flag results download -OrganismRecordClasses.OrganismRecordClass.is_published http://edamontology.org/topic_3068 Literature and Reference OrganismRecordClasses.OrganismRecordClass attribute is_published -OrganismRecordClasses.OrganismRecordClass.genome_version GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute genome_version record-internal results download -OrganismRecordClasses.OrganismRecordClass.annotation_version GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute annotation_version record-internal results download -OrganismRecordClasses.OrganismRecordClass.release_policy http://edamontology.org/topic_3068 Literature and Reference OrganismRecordClasses.OrganismRecordClass attribute release_policy -OrganismRecordClasses.OrganismRecordClass.is_in_apollo GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute is_in_apollo download -OrganismRecordClasses.OrganismRecordClass.apollolink GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute apollolink results -RflpIsolateRecordClasses.RflpIsolateRecordClass.host http://edamontology.org/topic_0637 Taxonomy RflpIsolateRecordClasses.RflpIsolateRecordClass attribute host results record download -RflpIsolateRecordClasses.RflpIsolateRecordClass.geographic_location http://edamontology.org/topic_0219 Curation and Annotation RflpIsolateRecordClasses.RflpIsolateRecordClass attribute geographic_location 2 results record download -RflpIsolateRecordClasses.RflpIsolateRecordClass.organ http://edamontology.org/topic_3067 Curation and Annotation RflpIsolateRecordClasses.RflpIsolateRecordClass attribute organ 2 results record -UserFileRecords.UserFile.filename_link http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute filename_link results -UserFileRecords.UserFile.title http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute title results -UserFileRecords.UserFile.notes http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute notes results -UserFileRecords.UserFile.filesize http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute filesize results -UserFileRecords.UserFile.format http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute format results -UserFileRecords.UserFile.uploadtime http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute uploadtime results -derisi_timeseries_pie http://purl.obolibrary.org/obo/OBI_0001985 PathwayRecordClasses.PathwayRecordClass attribute derisi_timeseries_pie record-internal graph-internal -## TEMPLATE_ANCHOR datasetCategory -## TEMPLATE_ANCHOR chipchipCategories - -## TEMPLATE_ANCHOR graphTextAttributeCategory -## TEMPLATE_ANCHOR profileSampleAttributesCategory -## TEMPLATE_ANCHOR profileMinMaxAttributesCategory -## TEMPLATE_ANCHOR profileMinMaxAttributesRnaSenseCategory -## TEMPLATE_ANCHOR profileMinMaxAttributesRnaAntisenseCategory -## TEMPLATE_ANCHOR phenotypeEdaAttributeCategory -## TEMPLATE_ANCHOR cellularLocalizationEdaAttributeCategory - -## TEMPLATE_ANCHOR metaboliteGraphTextAttributeCategory -## TEMPLATE_ANCHOR graphTextAttributeCategoryPathwayRecord -searchCategory-phenotype-text http://edamontology.org/topic_3298 Phenomics text-phenotype Phenotype Text PT Search for genes based on text searching phenotype data. internal -searchCategory-phenotype-molecular http://edamontology.org/topic_3298 Phenomics molecular-phenotype-data Molecular Phenotype MP Search for genes based on phenotype data internal -searchCategory-cellular-localization-quantitative http://edamontology.org/topic_0140 Protein targeting and localisation quantitative-cellular-localization Quantitative Cellular Localization QCL Search for genes based on quantitative cellular localization data internal -searchCategory-cellular-localization-goassoc http://edamontology.org/topic_0140 Protein targeting and localisation goassoc-cellular-localization GO Terms from Cellular Localization GOCL Search for genes based on GO Terms from cellular localization data internal -searchCategory-longread http://edamontology.org/topic_0114 Gene Structure longread Long Read Evidence LR Search for genes based on long-read RNASeq evidence internal -searchCategory-longreadspan longreadspan Long Read Span Evidence LR Search for genomic segments based on long-read RNASeq evidence internal -searchCategory-phenotype-curated http://edamontology.org/topic_3298 Phenomics curated-phenotype Curated Phenotype CP Search for genes based on curated phenotype data sets internal -searchCategory-association-to-genomic-segments http://edamontology.org/topic_3298 Phenomics association-to-genomic-segments Association to Genomic Segments AGS Search for genes which are associated to genomic segments by eQTL internal -searchCategory-similarity-of-association http://edamontology.org/topic_3298 Phenomics similarity-of-association Similarity of Association SA Search for genes by similarity of association. internal -searchCategory-T-test-2-sample-unequal-variance http://edamontology.org/topic_0804 immunoproteins,genes,antigens Limma Volcano Limma Volcano LIMV Search for genes based on differential protein abundance calculated by Limma, visualised with a volcano plot internal -searchCategory-putative-function http://edamontology.org/topic_3298 Phenomics putative-function Putative Function PF Search for genes based on comparisons of RNAi target sequencing coverage. internal -searchCategory-eqtl-similarity http://edamontology.org/topic_3298 Phenomics eqtl-similarity Similarity S Search for genes which have a similar profile for an experiment. internal -searchCategory-similarity http://edamontology.org/topic_3308 Transcriptomics similarity Similarity S Search for genes which have a similar profile for an experiment. internal -searchCategory-proteomics-quantitative-ratio http://edamontology.org/topic_0121 Proteomics proteomics-quantitative-ratio Quantitative Ratio QR Search for genes which are differentiated by log2 ratio of heavy to light to determine confidence Log2(H/L). internal -searchCategory-proteomics-direct-comparison http://edamontology.org/topic_0121 Proteomics proteomics-direct-comparison Direct Comparison DC Search for genes which are differentially expressed in a 2 state direct comparison. internal -searchCategory-functional-gene-list http://edamontology.org/topic_1775 Function prediction functional-gene-list Gene List GL Search for genes which were included in a gene list. internal -searchCategory-subcellular-gene-list http://edamontology.org/topic_0140 Protein targeting and localization subcellular-gene-list Gene List GL Search for genes which were included in a gene list. internal -searchCategory-proteomics-direct-conf-comparison http://edamontology.org/topic_0121 Proteomics proteomics-direct-conf-comparison Direct Confidence Comparison DCC Search for genes which are differentially expressed in a 2 state direct comparison with confidence. internal -searchCategory-transcriptomics-direct-comparison http://edamontology.org/topic_3308 Transcriptomics transcriptomics-direct-comparison Direct Comparison DC Search for genes which are differentially expressed in a 2 state direct comparison. internal -searchCategory-coexpression http://edamontology.org/topic_3308 Transcriptomics coexpression Coexpression C Search for genes which have positive or negative correlations with a set of genes. internal -searchCategory-splice-site-loc http://edamontology.org/topic_3308 Transcriptomics splice-site-loc Splice Site Loc SSL Search for genes near experimental splice site locations. internal -searchCategory-proteomics-percentile http://edamontology.org/topic_0121 Proteomics proteomics-percentile Percentile P Search for genes based on the rank of expression w/in an experiment. internal -searchCategory-transcriptomics-percentile http://edamontology.org/topic_3308 Transcriptomics transcriptomics-percentile Percentile P Search for genes based on the rank of expression w/in an experiment. internal -searchCategory-transcriptomics-metacycle http://edamontology.org/topic_3308 Transcriptomics transcriptomics-metacycle MetaCycle MC Search for genes based on MetaCycle methods internal -searchCategory-transcriptomics-iterativeWGCNA http://edamontology.org/topic_3308 Transcriptomics transcriptomics-iterativeWGCNA WGCNA W Search for genes based on iterativeWGCNA methods internal -searchCategory-metabolomics-fold-change http://edamontology.org/topic_3172 Metabolomics metabolomics-fold-change Fold Change FC Search for compounds which are differentially expressed between two sets of samples internal - -searchCategory-interactions http://edamontology.org/topic_0602 interactions and pathways GenesByY2hInteractions Interactions I Search for genes for interactions. internal - -searchCategory-chipchip http://edamontology.org/topic_3173 Epigenomics GenesByChIPchip chip-chip CC Search for genes with evidence for expression based on ChIP-chip peaks. internal - -searchCategory-metabolomics-percentile http://edamontology.org/topic_3172 Metabolomics metabolomics-percentile Percentile P Search for compounds which are differentially expressed between two sets of samples internal - - - -searchCategory-proteomics-fold-change http://edamontology.org/topic_0121 Proteomics proteomics-fold-change Fold Change FC Search for genes which are differentially expressed between two sets of samples. internal -searchCategory-transcriptomics-fold-change http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-change Fold Change FC Search for genes which are differentially expressed between two sets of samples. A set can have only one sample. This is an arithmetic calculation and no statistical significance is provided. internal - -searchCategory-transcriptomics-sense-antisense http://edamontology.org/topic_3308 Transcriptomics transcriptomics-sense-antisense SenseAntisense SA Search for genes that exhibit patterns of sense and antisense transcript expression between two sets of samples. This search is available for RNA seq datasets where read directionality (strandedness) was determined. internal -searchCategory-proteomics-fold-difference http://edamontology.org/topic_0121 Proteomics proteomics-fold-difference Fold Difference FD Search for genes which are different between two sets of samples. internal -searchCategory-transcriptomics-fold-difference http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-difference Fold Difference FD Search for genes which are different between two sets of samples. internal -searchCategory-fold-change-with-pvalue http://edamontology.org/topic_3308 Transcriptomics fold-change-with-pvalue Fold Change with pValue FCpV Search for genes which are differentially expressed between 2 samples. Fishers Exact Test p values for each gene/sample comparison were precomputed. internal -searchCategory-proteomics-fold-change-with-confidence http://edamontology.org/topic_0121 Proteomics proteomics-fold-change-with-confidence Fold Change with Confidence FCC Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates. internal -searchCategory-transcriptomics-fold-change-with-confidence http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-change-with-confidence Fold Change with Confidence FCC Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates. internal -searchCategory-proteomics-fold-change-with-fdr http://edamontology.org/topic_0121 Proteomics proteomics-fold-change-with-fdr Fold Change with FDR FCF Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates. internal -searchCategory-transcriptomics-differential-expression http://edamontology.org/topic_3308 Transcriptomics transcriptomics-differential_expression Differential Expression DE Search for genes that are differentially expressed between 2 samples with at least 2 biological replicates each. Adjusted p-values for each gene/sample were pre-computed using DESeq. internal -searchCategory-transcriptomics-fold-change-with-fdr http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-change-with-fdr Fold Change with FDR FCF Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates. internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesInGlycosomeProteome searchCategory-proteomics-quantitative-ratio TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesInGlycosomeProteome internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeText searchCategory-phenotype-text TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotypeText internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeTextTbrucei searchCategory-phenotype-text TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotypeTextTbrucei internal - webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_Segments searchCategory-association-to-genomic-segments TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEQTL_Segments internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity searchCategory-similarity Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByProfileSimilarity internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_HaploGrpSimilarity searchCategory-similarity-of-association TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEQTL_HaploGrpSimilarity internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByICEMRHostResponse searchCategory-T-test-2-sample-unequal-variance TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByICEMRHostResponse internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection searchCategory-T-test-2-sample-unequal-variance TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByToxoProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByToxoProfileSimilarity internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByProfileSimilarity internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEqtlProfileSimilarity searchCategory-eqtl-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEqtlProfileSimilarity internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGametocyteProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGametocyteProfileSimilarity internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCryptoRtpcrProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCryptoRtpcrProfileSimilarity internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRtPcrFoldChange searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRtPcrFoldChange internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGH searchCategory-fold-difference TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCortesCGH internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGHCrossStrain searchCategory-fold-difference TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCortesCGHCrossStrain internal webservice -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByName http://edamontology.org/topic_0199 Genetic Variation RflpIsolateRecordClasses.RflpIsolateRecordClass search RflpIsolateQuestions.ByName menu webservice -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.BySampleDetails http://edamontology.org/topic_0199 Genetic Variation RflpIsolateRecordClasses.RflpIsolateRecordClass search RflpIsolateQuestions.BySampleDetails menu webservice -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByGenotypeNumber http://edamontology.org/topic_0199 Genetic Variation RflpIsolateRecordClasses.RflpIsolateRecordClass search RflpIsolateQuestions.ByGenotypeNumber menu -## TEMPLATE_ANCHOR internalGeneSearchCategory -## TEMPLATE_ANCHOR internalSpanSearchCategory - - - - -## ToxoDB Chip - - - - -rtpcr_graph DatasetRecordClasses.DatasetRecordClass.DS_2bf995383e TranscriptRecordClasses.TranscriptRecordClass attribute rtpcr_graph gene results - - -tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 TranscriptRecordClasses.TranscriptRecordClass attribute tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph gene results - - download -prob_MAP DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute prob_MAP gene results - download -prob_MCMC DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute prob_MCMC gene results - download -MAP_location DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute MAP_location gene results - download -MCMC_location DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute MCMC_location gene results - - -quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from the CDS Sequence 1 internal download -TranscriptRecordClasses.TranscriptRecordClass.no_tet_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute no_tet_cds transcript 1 results download -TranscriptRecordClasses.TranscriptRecordClass.bfd3_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd3_cds transcript 2 results download -TranscriptRecordClasses.TranscriptRecordClass.bfd6_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd6_cds transcript 3 results download -TranscriptRecordClasses.TranscriptRecordClass.pf_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute pf_cds transcript 4 results download -TranscriptRecordClasses.TranscriptRecordClass.dif_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute dif_cds transcript 5 results - -foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from the CDS Sequence - Fold-Change 2 internal download -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd3_cds transcript 1 results download -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd6_cds transcript 2 results download -TranscriptRecordClasses.TranscriptRecordClass.fc_pf_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_pf_cds transcript 3 results download -TranscriptRecordClasses.TranscriptRecordClass.fc_dif_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_dif_cds transcript 4 results - -quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from gene model (5 prime UTR + CDS) 3 internal download -TranscriptRecordClasses.TranscriptRecordClass.no_tet_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute no_tet_model transcript 1 results download -TranscriptRecordClasses.TranscriptRecordClass.bfd3_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd3_model transcript 2 results download -TranscriptRecordClasses.TranscriptRecordClass.bfd6_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd6_model transcript 3 results download -TranscriptRecordClasses.TranscriptRecordClass.pf_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute pf_model transcript 4 results download -TranscriptRecordClasses.TranscriptRecordClass.dif_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute dif_model transcript 5 results - -foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from gene model (5 prime UTR + CDS) - Fold-Change 4 internal download -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd3_model transcript 1 results download -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd6_model transcript 2 results download -TranscriptRecordClasses.TranscriptRecordClass.fc_pf_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_pf_model transcript 3 results download -TranscriptRecordClasses.TranscriptRecordClass.fc_dif_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_dif_model transcript 4 results - -mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph DatasetRecordClasses.DatasetRecordClass.DS_4585d065bf TranscriptRecordClasses.TranscriptRecordClass attribute mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph gene results - -pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph DatasetRecordClasses.DatasetRecordClass.DS_c35d971a20 TranscriptRecordClasses.TranscriptRecordClass attribute pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph gene results - webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC internal - webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile searchCategory-transcriptomics-percentile TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile internal - webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense searchCategory-transcriptomics-sense-antisense TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense internal - webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile searchCategory-transcriptomics-percentile TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.genesByRNASeqUserDataset searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.genesByRNASeqUserDataset internal webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacyclmics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC internal - - webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacyclmics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC internal - - - - - webservice -OrganismRecordClasses.OrganismRecordClass.OrganismQuestions.GenomeDataTypes http://edamontology.org/topic_0637 organism OrganismRecordClasses.OrganismRecordClass search OrganismQuestions.GenomeDataTypes menu - -FileRecordClasses.FileRecordClass.data_type http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute data_type 1 results -FileRecordClasses.FileRecordClass.file_format http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute file_format 2 results -FileRecordClasses.FileRecordClass.filesize_text http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute filesize_text 3 results record-internal -FileRecordClasses.FileRecordClass.filesize http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute filesize 3 record-internal download -FileRecordClasses.FileRecordClass.organism http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute organism 4 results -FileRecordClasses.FileRecordClass.build_num http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute build_num 5 results -FileRecordClasses.FileRecordClass.filename http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute filename 6 results -FileRecordClasses.FileRecordClass.category http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute category 1 results -FileRecordClasses.FileRecordClass.file_type http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute file_type 1 results - -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenomicSpanByLongReadEvidence DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.GenomicSpanByLongReadEvidence menu webservice -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.IntronJunctionDynamicSearch DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.IntronJunctionDynamicSearch menu - -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByLongReadEvidence http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByLongReadEvidence menu - - -JbrowseRecordClasses.JbrowseGeneRecordClass.link http://edamontology.org/topic_3345 Data identity and mapping JbrowseRecordClasses.JbrowseGeneRecordClass attribute link gene record -JbrowseRecordClasses.JbrowseGeneRecordClass.product http://edamontology.org/topic_0219 Curation and Annotation JbrowseRecordClasses.JbrowseGeneRecordClass attribute product gene record -JbrowseRecordClasses.JbrowseGeneRecordClass.organism http://edamontology.org/topic_0637 Taxonomy JbrowseRecordClasses.JbrowseGeneRecordClass attribute organism gene record -JbrowseRecordClasses.JbrowseGeneRecordClass.name http://edamontology.org/topic_0219 Curation and Annotation JbrowseRecordClasses.JbrowseGeneRecordClass attribute name gene record -JbrowseRecordClasses.JbrowseGeneRecordClass.orthomcl_link http://edamontology.org/topic_3299 Evolutionary Biology JbrowseRecordClasses.JbrowseGeneRecordClass attribute orthomcl_link gene record -JbrowseRecordClasses.JbrowseGeneRecordClass.so_term_name http://edamontology.org/topic_1775 GenomicSequenceLocationCategory JbrowseRecordClasses.JbrowseGeneRecordClass attribute so_term_name gene record -JbrowseRecordClasses.JbrowseGeneRecordClass.location_text GenomicSequenceLocationCategory Function analysis JbrowseRecordClasses.JbrowseGeneRecordClass attribute location_text gene record - - -JbrowseRecordClasses.JbrowseGeneRecordClass.GOTerms http://edamontology.org/topic_1775 Function analysis JbrowseRecordClasses.JbrowseGeneRecordClass table GOTerms transcript record -JbrowseRecordClasses.Jbrowse.GeneRecordClass.GeneTranscripts http://edamontology.org/topic_0114 Gene Structure JbrowseRecordClasses.JbrowseGeneRecordClass table GeneTranscripts gene record - + ,,,recordClassName,targetType,name,displayName,shortDisplayName,description,geneOrTranscript,displayOrder,scope,scope,scope, +,,,eupath/eupath.owl#recordClassName,eupath/eupath.owl#targetType,eupath/eupath.owl#name,EUPATH_0000052,eupath/eupath.owl#shortDisplayName,eupath/eupath.owl#description,eupath/eupath.owl#geneOrTranscript,EUPATH_0000274,eupath/eupath.owl#scope,eupath/eupath.owl#scope,eupath/eupath.owl#scope, +GenomicSequencePropertiesCategory,,,,,GenomicSequencePropertiesCategory,Genomic Sequence Properties,,,,5,,,, +GenomicSequenceLocationCategory,,,,,GenomicSequenceLocationCategory,Genomic Location,,,,6,,,, +TextCategory,,,,,TextCategory,Text,,,,1,,,, +AlignmentsCategory,http://edamontology.org/topic_0080,Sequence Analysis,,,AlignmentsCategory,BLAT and Blast Alignments,,,,,,,, +CodingPotentialCategory,http://edamontology.org/topic_0080,Sequence Analysis,,,CodingPotentialCategory,Coding Potential,,,,,,,, +InterProDomainsCategory,http://edamontology.org/topic_0123,Protein properties,,,InterProDomainsCategory,InterPro Domains,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByCompoundID,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByCompoundID,,,,,,menu,webservice,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByEcReaction,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByEcReaction,,,,,,menu,webservice,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChange,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChange,,,,,,menu,webservice,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByGeneID,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByGeneID,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularFormula,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByMolecularFormula,,,,,,menu,webservice,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularWeight,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByMolecularWeight,,,,,,menu,webservice,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathway,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPathway,,,,,,menu,webservice,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathwayID,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPathwayID,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByText,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByText,,,,,,menu,webservice,, +EstRecordClasses.EstRecordClass.EstQuestions.EstBySourceId,http://edamontology.org/topic_0219,annot and curation,EstRecordClasses.EstRecordClass,search,EstQuestions.EstBySourceId,,,,,,menu,webservice,, +EstRecordClasses.EstRecordClass.EstQuestions.ESTsByGeneIDs,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.ESTsByGeneIDs,,,,,,menu,webservice,, +EstRecordClasses.EstRecordClass.EstQuestions.EstsByLibrary,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByLibrary,,,,,,menu,webservice,, +EstRecordClasses.EstRecordClass.EstQuestions.EstsByLocation,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByLocation,,,,,,menu,webservice,, +EstRecordClasses.EstRecordClass.EstQuestions.EstsBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsBySimilarity,,,,,,,webservice,, +EstRecordClasses.EstRecordClass.EstQuestions.EstsByMultiBlast,http://edamontology.org/topic_0080,Sequence Analysis,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByMultiBlast,,,,,,menu,webservice,, +EstRecordClasses.EstRecordClass.EstQuestions.EstsByWeightFilter,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByWeightFilter,,,,,,,,, +EstRecordClasses.EstRecordClass.EstQuestions.EstsWithGeneOverlap,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsWithGeneOverlap,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.,,,,,,,,, +GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,,,,,,internal,webservice,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC,searchCategory-transcriptomics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC,searchCategory-transcriptomics-iterativeWGCNA,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCoexpression,searchCategory-coexpression,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCoexpression,,,,,,internal,webservice,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCandidaCoexpression,searchCategory-coexpression,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCandidaCoexpression,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNeurosporaCoexpression,searchCategory-coexpression,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByNeurosporaCoexpression,,,,,,internal,webservice,, + ,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile,searchCategory-transcriptomics-percentile,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByLocusTag,http://edamontology.org/topic_0219,annot and curation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GeneByLocusTag,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneBySingleLocusTag,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GeneBySingleLocusTag,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByTranscriptID,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GeneByTranscriptID,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByBindingSiteFeature,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByBindingSiteFeature,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCentromereProximity,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCentromereProximity,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEcNumber,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEcNumber,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByFunctionalGeneList,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByFunctionalGeneList,,,,,,menu,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesBySubcellularLocalization,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesBySubcellularLocalization,,,,,,menu,,, +##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC,,,,,,menu,webservice,, +##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC,http://edamontology.org/topic_1775,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExonCount,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByExonCount,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByParalogCount,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByParalogCount,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExportPrediction,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByExportPrediction,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneType,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGeneType,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIntronJunctions,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByIntronJunctions,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneModelChars,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGeneModelChars,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGoTerm,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGoTerm,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySecondaryMetabolites,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySecondaryMetabolites,,,,,,menu,webservice,, +## TEMPLATE_ANCHOR geneImageGoTermOntology,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByHighThroughputPhenotyping,searchCategory-phenotype-quantitative,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByHighThroughputPhenotyping,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByInterproDomain,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByInterproDomain,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIsoelectricPoint,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByIsoelectricPoint,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByLocation,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMassSpec,http://edamontology.org/topic_0121,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMassSpec,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPTM,http://edamontology.org/topic_0121,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPTM,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathwayHagai,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMetabolicPathwayHagai,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathway,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMetabolicPathway,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByReactionCompounds,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByReactionCompounds,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMolecularWeight,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMolecularWeight,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMotifSearch,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMotifSearch,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNgsSnps,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByNgsSnps,,,,,,menu,webservice,, +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumber,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCopyNumber,,,,,,menu,webservice,, +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumberComparison,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCopyNumberComparison,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNonnuclearLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByNonnuclearLocation,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOldAnnotation,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByOldAnnotation,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOrthologPattern,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByOrthologPattern,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhyleticProfile,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhyleticProfile,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPdbSimilarity,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPdbSimilarity,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithAlphafold,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithAlphafold,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySingleCell,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySingleCell,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFungiProteinProteinInteraction,searchCategory-interactions,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByFungiProteinProteinInteraction,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPlasmoProteinProteinInteraction,searchCategory-interactions,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPlasmoProteinProteinInteraction,,,,,,internal,webservice,, +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC,,,,,,menu,webservice,, +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRodentMalariaPhenotype,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRodentMalariaPhenotype,,,,,,,,, +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySecondaryStructure,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySecondaryStructure,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySimilarity,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMultiBlast,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMultiBlast,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySnps,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySnps,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularLocalization,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySubcellularLocalization,,,,,,menu,webservice,, +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalInteraction,,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByFunctionalInteraction,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTaxon,http://edamontology.org/topic_0637,Taxonomy,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByTaxon,,,,,,menu,webservice,, +GeneRecordClasses.GeneRecordClass.GeneQuestions.GenesByTaxonGene,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,search,GeneQuestions.GenesByTaxonGene,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTelomereProximity,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByTelomereProximity,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByText,TextCategory,TextCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByText,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTransmembraneDomains,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByTransmembraneDomains,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesOrthologousToAGivenGene,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesOrthologousToAGivenGene,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithEpitopes,http://edamontology.org/topic_0804,immunoproteins,genes,antigens,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithEpitopes,,,,,,menu,webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithSignalPeptide,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithSignalPeptide,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithStructurePrediction,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithStructurePrediction,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUpdatedAnnotation,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithUpdatedAnnotation,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUserComments,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithUserComments,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithApolloAnnotation,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithApolloAnnotation,,,,,,internal,webservice,, +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.InternalGenesByEcNumber,,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.InternalGenesByEcNumber,,,,,,,,, +TranscriptAttributes.MetaRandomIntAttr,RandomIntAttr,,TranscriptRecordClasses.TranscriptRecordClass,attributeMetaQuery,MetaRandomIntAttr,,Random Integer,gene,,results,download,,, +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceBySourceId,http://edamontology.org/topic_0219,annot and curation,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequenceBySourceId,,,,,,menu,webservice,, +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceByWeightFilter,,,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequenceByWeightFilter,,,,,,,,, +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesBySimilarity,,,,,,,webservice,, +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByMultiBlast,http://edamontology.org/topic_0080,Sequence Analysis,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesByMultiBlast,,,,,,menu,webservice,, +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByTaxon,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesByTaxon,,,,,,menu,webservice,, +##SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByPloidy,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesByPloidy,,,,,,menu,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByProteinArray,http://edamontology.org/topic_0804,Immunology,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByProteinArray,,,,,,menu,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByMicroarrayEvidence,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByMicroarrayEvidence,,,,,,menu,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByQuantitativeProteomics,http://edamontology.org/topic_0121,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByQuantitativeProteomics,,,,,,menu,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByPhenotypeEvidence,http://edamontology.org/topic_3298,Phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByPhenotypeEvidence,,,,,,menu,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRNASeqEvidence,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByRNASeqEvidence,,,,,,menu,,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByY2hInteractions,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByY2hInteractions,,,,,,menu,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence,,,,,,menu,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRTPCREvidence,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByRTPCREvidence,,,,,,menu,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByChIPchip,http://edamontology.org/topic_3173,Epigenomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByChIPchip,,,,,,menu,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByCompoundsTransform,,Metabolomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByCompoundsTransform,,,,,,,,, +##TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMassSpecEvidence,,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByMassSpecEvidence,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMissingTranscriptsTransform,,,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByMissingTranscriptsTransform,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByOrthologs,,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByOrthologs,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByPathwaysTransform,,,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByPathwaysTransform,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByProteinStructure,,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByProteinStructure,,,,,,,,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByCountry,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByCountry,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByHost,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByHost,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByPopsetId,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByPopsetId,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByIsolationSource,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByIsolationSource,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByProduct,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByProduct,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByStudy,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByStudy,,,,,,,,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByTaxon,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByTaxon,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsBySimilarity,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetsBySimilarity,,,,,,,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByMultiBlast,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetsByMultiBlast,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetIsolatesByText,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetIsolatesByText,,,,,,menu,webservice,, +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByWeightFilter,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetsByWeightFilter,,,,,,,,, +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfByOrfId,http://edamontology.org/topic_0219,annot and curation,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfByOrfId,,,,,,menu,webservice,, +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsByLocation,,,,,,menu,webservice,, +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByMotifSearch,http://edamontology.org/topic_0080,Sequence Analysis,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsByMotifSearch,,,,,,menu,webservice,, +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsBySimilarity,,,,,,menu,webservice,, +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByWeightFilter,http://edamontology.org/topic_0219,annot and curation,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsByWeightFilter,,,,,,,,, +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompoundIds,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByCompoundIds,,,,,,,,, +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompounds,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByCompounds,,,,,,menu,webservice,, +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneIds,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByGeneIds,,,,,,,,, +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneList,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByGeneList,,,,,,menu,webservice,, +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByIdentifierList,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByIdentifierList,,,,,,menu,webservice,, +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByPathwayID,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByPathwayID,,,,,,menu,webservice,, +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByWeightFilter,,,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByWeightFilter,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpBySourceId,http://edamontology.org/topic_0219,annot and curation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpBySourceId,,,,,1,menu,webservice,, +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByGeneId,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByGeneId,,,,,5,menu,webservice,, +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByIsolatePattern,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByIsolatePattern,,,,,4,menu,webservice,, +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByLocation,,,,,2,menu,webservice,, +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByStrain,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByStrain,,,,,3,menu,webservice,, +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByWeightFilter,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByWeightFilter,,,,,,,,, +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpBySourceId,http://edamontology.org/topic_0219,annot and curation,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpBySourceId,,,,,1,menu,webservice,, +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByGeneIds,http://edamontology.org/topic_0199,,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByGeneIds,,,,,5,menu,webservice,, +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByIsolateGroup,http://edamontology.org/topic_0199,,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByIsolateGroup,,,,,3,menu,webservice,, +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByLocation,,,,,2,menu,webservice,, +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByTwoIsolateGroups,http://edamontology.org/topic_0199,Genetic variation,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByTwoIsolateGroups,,,,,4,menu,webservice,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByEQTLtoGenes,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansByEQTLtoGenes,,,,,,menu,webservice,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByMotifSearch,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansByMotifSearch,,,,,,menu,webservice,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySourceId,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansBySourceId,,,,,,menu,webservice,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansBySpanLogic,,,,,,,,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByWeightFilter,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansByWeightFilter,,,,,,,,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenesBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.GenesBySpanLogic,,,,,,,,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.OrfsBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.OrfsBySpanLogic,,,,,,,,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.SnpsBySpanLogic,,,,,,,,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsChipsBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.SnpsChipsBySpanLogic,,,,,,,,, +SampleRecordClasses.SampleRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SampleRecordClasses.SampleRecordClass,attribute,record_overview,,,,,,record-internal,,, +SampleRecordClasses.SampleRecordClass.Characteristics,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,Characteristics,,,,,3,record,download,, +SampleRecordClasses.SampleRecordClass.Protocols,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,Protocols,,,,,2,record,download,, +SampleRecordClasses.SampleRecordClass.ProcessedSample,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,ProcessedSample,,,,,4,record,download,, +SampleRecordClasses.SampleRecordClass.Datasets,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,Datasets,,,,,1,record,download,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.Datasets,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,Datasets,,,,,1,record,download,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,record_overview,,,,,,record-internal,,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.Characteristics,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,Characteristics,,,,,2,record,download,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.Protocols,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,Protocols,,,,,2,record,download,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.ProcessedSample,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,ProcessedSample,,,,,3,record,download,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpGenotype,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,RflpGenotype,,,,,3,record,download,, +GeneRecordClasses.GeneRecordClass.Sequences,http://edamontology.org/data_2044,sequences,GeneRecordClasses.GeneRecordClass,table,Sequences,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.GeneTranscripts,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,table,GeneTranscripts,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.CellularLocalization,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,CellularLocalization,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.ECNumbers,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,ECNumbers,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.SubcellularLocationGeneLists,http://edamontology.org/topic_0140,Subcellular Localization,GeneRecordClasses.GeneRecordClass,table,SubcellularLocationGeneLists,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.FunctionPredictionGeneLists,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,FunctionPredictionGeneLists,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.ECNumbersInferred,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,ECNumbersInferred,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.ProteinSequence,http://edamontology.org/data_2976,Protin Sequence,GeneRecordClasses.GeneRecordClass,table,ProteinSequence,,,,transcript,,download,record,, +,,,,,,,,,,,,,, +GeneRecordClasses.GeneRecordClass.Seqedits,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,table,Seqedits,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.Antibody,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,Antibody,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.CommunityExpComments,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,CommunityExpComments,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationDatasets,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,EdaCellularLocalizationDatasets,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationGraphsDataTable,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,EdaCellularLocalizationGraphsDataTable,,,,gene,,record-internal,download,, +GeneRecordClasses.GeneRecordClass.Products,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,Products,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.SNPsAlignment,http://edamontology.org/topic_0199,Genetic Variation,GeneRecordClasses.GeneRecordClass,table,SNPsAlignment,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.MercatorTable,http://edamontology.org/topic_3299,EvoBiol Comparison,GeneRecordClasses.GeneRecordClass,table,MercatorTable,,,,gene,,record, ,, +,,,,,,,,,,,,,, +GeneRecordClasses.GeneRecordClass.Apollo_link,http://edamontology.org/topic_0080,Sequence Analysis ,GeneRecordClasses.GeneRecordClass,table,Apollo_link,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.Apollo_link,http://edamontology.org/topic_0080,Gene Models,GeneRecordClasses.GeneRecordClass,table,Apollo_link,,,,gene,,record,,, +,,,,,,,,,,,,,, +GeneRecordClasses.GeneRecordClass.PhenotypeScore,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeScore,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.PhenotypeGraphsDataTable,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeGraphsDataTable,,,,gene,,record-internal,download,, +GeneRecordClasses.GeneRecordClass.specialJbrowseUrl,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,attribute,specialJbrowseUrl,,,,,1,gene,record-internal,, +GeneRecordClasses.GeneRecordClass.ExpressionGraphsDataTable,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,ExpressionGraphsDataTable,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphsDataTable,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,UserDatasetsTranscriptomicsGraphsDataTable,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.FacetMetadata,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,FacetMetadata,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,FungiVBOrgLinkoutsTable,,,,gene,,record-internal,,, +,,,,,,,,,,,,,, +GeneRecordClasses.GeneRecordClass.ContXAxisMetadata,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,ContXAxisMetadata,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.ai_expression,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,ai_expression,,,,gene,2,record,,, +GeneRecordClasses.GeneRecordClass.TranscriptionSummary,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,TranscriptionSummary,,,,gene,2,record,,, +GeneRecordClasses.GeneRecordClass.ExpressionGraphs,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,ExpressionGraphs,,,,gene,3,record,,, +GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphs,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,UserDatasetsTranscriptomicsGraphs,,,,gene,4,record,,, +GeneRecordClasses.GeneRecordClass.SpliceSites,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,SpliceSites,,,,gene,2,record,download,, +GeneRecordClasses.GeneRecordClass.PolyASites,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,PolyASites,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC,,,,gene,3,,download,, +GeneRecordClasses.GeneRecordClass.pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC,,,,gene,3,,download,, +GeneRecordClasses.GeneRecordClass.pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC,,,,gene,3,,download,, +GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.CGD_CuratedPhenotypes,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,CGD_CuratedPhenotypes,,,,gene,3,record,download,, +GeneRecordClasses.GeneRecordClass.ProteinExpressionGraphs,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,ProteinExpressionGraphs,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.HostResponseGraphs,http://edamontology.org/topic_0804,Immunology,GeneRecordClasses.GeneRecordClass,table,HostResponseGraphs,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.EdaPhenotypeDatasets,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,EdaPhenotypeDatasets,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphs,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeScoreGraphs,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.eQTLPhenotypeGraphs,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,eQTLPhenotypeGraphs,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.PhenotypeGraphs,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeGraphs,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphsDataTable,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeScoreGraphsDataTable,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.EdaPhenotypeGraphsDataTable,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,EdaPhenotypeGraphsDataTable,,,,gene,,record-internal,download,, +GeneRecordClasses.GeneRecordClass.HostResponseGraphsDataTable,http://edamontology.org/topic_0804,Immunology,GeneRecordClasses.GeneRecordClass,table,HostResponseGraphsDataTable,,,,gene,,record-internal,download,, +GeneRecordClasses.GeneRecordClass.RodMalPhenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,RodMalPhenotype,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,Plasmo_eQTL_Table,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,Phenotype,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.PhenotypeMagnaporthe,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeMagnaporthe,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.InterPro,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,InterPro,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.WolfPsortForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,WolfPsortForm,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.BlastpForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,BlastpForm,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.InterProForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,InterProForm,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.MendelGPIForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,MendelGPIForm,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.FungalGPIForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,FungalGPIForm,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.StringDBForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,StringDBForm,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.hasAlphaFold,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,attribute,hasAlphaFold,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.alphafold_url,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,attribute,alphafold_url,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.AlphaFoldLinkouts,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,AlphaFoldLinkouts,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.TMHMM,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,TMHMM,,,,transcript,,,download,, +GeneRecordClasses.GeneRecordClass.LowComplexity,http://edamontology.org/topic_0160,Sequence sites, features and motifs,GeneRecordClasses.GeneRecordClass,table,LowComplexity,,,,transcript,,,download, +GeneRecordClasses.GeneRecordClass.GeneModelDump,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,table,GeneModelDump,,,,transcript,,,download,, +GeneRecordClasses.GeneRecordClass.SignalP,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,SignalP,,,,transcript,,,download,, +GeneRecordClasses.GeneRecordClass.GeneLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,table,GeneLocation,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table,http://edamontology.org/topic_3298,Phenomics,GeneRecordClasses.GeneRecordClass,table,Plasmo_eQTL_Table,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.UserComments,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,UserComments,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.Notes,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,Notes,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.external_db_name,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,external_db_name,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.external_db_version,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,external_db_version,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,record_overview,,,,gene,,,,, +GeneRecordClasses.GeneRecordClass.EcNumber,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,EcNumber,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.MassSpec,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,MassSpec,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.MassSpecDownload,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,MassSpecDownload,,,,transcript,,download,,, +GeneRecordClasses.GeneRecordClass.MassSpecMod,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,MassSpecMod,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.GOSlim,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,GOSlim,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.GOTerms,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,GOTerms,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.Y2hInteractions,http://edamontology.org/topic_0128,Protein Interactions,GeneRecordClasses.GeneRecordClass,table,Y2hInteractions,,,,gene,,record,download,, +GeneRecordClasses.GeneRecordClass.Orthologs,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,table,Orthologs,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.OrthologsLite,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,table,OrthologsLite,,,,gene,,,,, +GeneRecordClasses.GeneRecordClass.MetabolicPathwaysMPMP,http://edamontology.org/topic_0753,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,MetabolicPathwaysMPMP,,,,transcript,1,record,download,, +GeneRecordClasses.GeneRecordClass.MetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,MetabolicPathways,,,,transcript,2,record,download,, +GeneRecordClasses.GeneRecordClass.Alias,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,Alias,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.strain,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,strain,,,,gene,,record-internal,download,, +GeneRecordClasses.GeneRecordClass.PubMed,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,table,PubMed,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.Cellxgene,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,Cellxgene,,,,transcript,,record,,, +GeneRecordClasses.GeneRecordClass.GeneLinkouts,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneLinkouts,,,,transcript,,record,download,, +GeneRecordClasses.GeneRecordClass.3dPreds,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,3dPreds,,,,transcript,2,record,download,, +GeneRecordClasses.GeneRecordClass.PdbSimilarities,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,PdbSimilarities,,,,transcript,1,record,download,, +GeneRecordClasses.GeneRecordClass.Ssgcid,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,Ssgcid,,,,transcript,3,record,,, +GeneRecordClasses.GeneRecordClass.Epitopes,http://edamontology.org/topic_0804,immunoproteins,genes,antigens,GeneRecordClasses.GeneRecordClass,table,Epitopes,,,,transcript,,record,download +GeneRecordClasses.GeneRecordClass.Product,http://edamontology.org/topic_0123,Protein properties,GeneRecordClasses.GeneRecordClass,table,Product,,,,transcript,,,,, +GeneRecordClasses.GeneRecordClass.GeneName,http://edamontology.org/data_2299,Gene name,GeneRecordClasses.GeneRecordClass,table,GeneName,,,,transcript,,,,, +GeneRecordClasses.GeneRecordClass.ProteinExpressionPBrowse,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,ProteinExpressionPBrowse,,,,transcript,,,record,, +GeneRecordClasses.GeneRecordClass.ProteinProperties,http://edamontology.org/topic_0123,Protein properties,GeneRecordClasses.GeneRecordClass,table,ProteinProperties,,,,transcript,,download,record,download, +GeneRecordClasses.GeneRecordClass.AllProducts,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,AllProducts,,,,transcript,2,results,record,download, +GeneRecordClasses.GeneRecordClass.ApolloProducts,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,ApolloProducts,,,,transcript,3,results,record,, +GeneRecordClasses.GeneRecordClass.GeneId,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneId,,,,gene,,,Record-internal,, +GeneRecordClasses.GeneRecordClass.GeneGffAliases,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneGffAliases,,,,gene,,,,, +GeneRecordClasses.GeneRecordClass.GeneGffGoTerms,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,GeneGffGoTerms,,,,gene,,,,, +GeneRecordClasses.GeneRecordClass.GeneGffDbxrefs,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneGffDbxrefs,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.GenBankLocations,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,table,GenBankLocations,,,,transcript,,download,record,, +GeneRecordClasses.GeneRecordClass.CompoundsMetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,CompoundsMetabolicPathways,,,,transcript,3,record,download,, +GeneRecordClasses.GeneRecordClass.MobileElements,http://edamontology.org/topic_0798,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,MobileElements,,,,transcript,3,record,download,, +GeneRecordClasses.GeneRecordClass.MetaTable,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,table,MetaTable,,,,gene,,record-internal,,, +TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMis,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfal3D7PiggyBacMutMis,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMfs,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfal3D7PiggyBacMutMfs,,,,gene,,results,download,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutHMS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoHPiggyBacMutHMS,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutOIS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoHPiggyBacMutOIS,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMIS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMIS,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMISplus,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMISplus,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMFS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMFS,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMutability,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMutability,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncPE,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncPE,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLiver,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncLiver,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLung,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncLung,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncSpleen,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncSpleen,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprMeanPhenotype,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprMeanPhenotype,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.Publications,http://edamontology.org/topic_3068,Literature and Reference,TranscriptRecordClasses.TranscriptRecordClass,attribute,Publications,,,,transcript,,,,, +TranscriptRecordClasses.TranscriptRecordClass.dic_img_uri,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,dic_img_uri,,,,gene,,record-internal,,, +TranscriptRecordClasses.TranscriptRecordClass.gfp_img_uri,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,gfp_img_uri,,,,gene,,record-internal,,, +TranscriptRecordClasses.TranscriptRecordClass.is_visible,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,is_visible,,,,gene,,record-internal,,, +TranscriptRecordClasses.TranscriptRecordClass.has_image,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,has_image,,,,gene,,record-internal,,, +TranscriptRecordClasses.TranscriptRecordClass.dbp_image_note,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,dbp_image_note,,,,gene,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.dbp_image,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,dbp_image,,,,gene,,results,,, +TranscriptRecordClasses.TranscriptRecordClass.overview,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,overview,,,,gene,,,,, +TranscriptRecordClasses.TranscriptRecordClass.snpoverview,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,snpoverview,,,,gene,,,,, +TranscriptRecordClasses.TranscriptRecordClass.gbrowseLink,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gbrowseLink,,,,gene,,,,, +GeneRecordClasses.GeneRecordClass.jbrowseLink,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,jbrowseLink,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.pbrowseLink,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,pbrowseLink,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.geneJbrowseUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,geneJbrowseUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.geneJbrowseFullUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,geneJbrowseFullUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.geneApolloFullUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,geneApolloFullUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.apolloIdCheck,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,apolloIdCheck,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.snpsJbrowseUrl,http://edamontology.org/topic_2885,DNAPolymorhph,GeneRecordClasses.GeneRecordClass,attribute,snpsJbrowseUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.snpsJbrowseFullUrl,http://edamontology.org/topic_2885,DNAPolymorhph,GeneRecordClasses.GeneRecordClass,attribute,snpsJbrowseFullUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.blatJbrowseUrl,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,attribute,blatJbrowseUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.blatJbrowseFullUrl,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,attribute,blatJbrowseFullUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.syntenyJbrowseUrl,http://edamontology.org/topic_3299,orthologs and synteny,GeneRecordClasses.GeneRecordClass,attribute,syntenyJbrowseUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.syntenyJbrowseFullUrl,http://edamontology.org/topic_3299,orthologs and synteny,GeneRecordClasses.GeneRecordClass,attribute,syntenyJbrowseFullUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.microarray_dataset_count,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,microarray_dataset_count,,,,gene,1,,record,, +GeneRecordClasses.GeneRecordClass.rnaseq_dataset_count,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,rnaseq_dataset_count,,,,gene,1,,record,, +GeneRecordClasses.GeneRecordClass.CoverageJbrowseUrl,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,CoverageJbrowseUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.CoverageJbrowseIntUrl,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,CoverageJbrowseIntUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.GeneModelGbrowseUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,GeneModelGbrowseUrl,,,,gene,,,record,, +GeneRecordClasses.GeneRecordClass.GeneApolloGbrowseUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,GeneModelApolloUrl,,,,gene,,,record,, +GeneRecordClasses.GeneRecordClass.BlatAlignmentsGbrowseUrl,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,attribute,BlatAlignmentsGbrowseUrl,,,,gene,,,record,, +GeneRecordClasses.GeneRecordClass.SyntenyGbrowseUrl,http://edamontology.org/topic_3299,orthologs and synteny,GeneRecordClasses.GeneRecordClass,attribute,SyntenyGbrowseUrl,,,,gene,,,record,, +GeneRecordClasses.GeneRecordClass.SnpsGbrowseUrl,http://edamontology.org/topic_2885,DNAPolymorhph,GeneRecordClasses.GeneRecordClass,attribute,SnpsGbrowseUrl,,,,gene,,,record,, +GeneRecordClasses.GeneRecordClass.protein_expression_gtracks,http://www.w3.org/2002/07/owl#Thing,thing,GeneRecordClasses.GeneRecordClass,attribute,protein_expression_gtracks,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.ProteomicsPbrowseUrl,http://www.w3.org/2002/07/owl#Thing,thing,GeneRecordClasses.GeneRecordClass,attribute,ProteomicsPbrowseUrl,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.FeaturesPbrowseUrl,http://www.w3.org/2002/07/owl#Thing,thing,GeneRecordClasses.GeneRecordClass,attribute,FeaturesPbrowseUrl,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.genus_species,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,genus_species,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.genus_species,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,genus_species,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.gene_context_start,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_context_start,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.gene_context_end,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_context_end,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.context_start,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,context_start,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.context_end,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,context_end,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.start_min,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,start_min,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.end_max,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,end_max,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.gene_start_min,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_start_min,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.gene_end_max,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_end_max,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.protein_gtracks,http://edamontology.org/topic_0160,Sequence sites, features and motifs,TranscriptRecordClasses.TranscriptRecordClass,attribute,protein_gtracks,,,,transcript,,,record, +TranscriptRecordClasses.TranscriptRecordClass.JBrowse,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,JBrowse,,,,gene,,results,record,, +TranscriptRecordClasses.TranscriptRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,source_id,,,,gene,,record,,, +GeneRecordClasses.GeneRecordClass.source_id,http://edamontology.org/topic_0219,annot and cur,GeneRecordClasses.GeneRecordClass,attribute,source_id,,,,gene,,record-internal,,download, +GeneRecordClasses.GeneRecordClass.sequence_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,sequence_id,,,,gene,,results,record-internal,download, +TranscriptRecordClasses.TranscriptRecordClass.sequence_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,sequence_id,,,,gene,,results,,download, +GeneRecordClasses.GeneRecordClass.chromosome,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,chromosome,,,,gene,,results,record-internal,download, +TranscriptRecordClasses.TranscriptRecordClass.chromosome,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,chromosome,,,,gene,,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,TranscriptRecordClasses.TranscriptRecordClass,attribute,organism,,,,gene,,results,,download, +GeneRecordClasses.GeneRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,attribute,organism,,,,gene,,results,,, +GeneRecordClasses.GeneRecordClass.Taxonomy,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,table,Taxonomy,,,,gene,,,record,, +GeneRecordClasses.GeneRecordClass.ds_annotation_version,http://edamontology.org/topic_0219,annotation,GeneRecordClasses.GeneRecordClass,attribute,ds_annotation_version,,,,,1,,record,, +GeneRecordClasses.GeneRecordClass.attribution_partial,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,attribute,attribution_partial,,,,,,,record-internal,, +GeneRecordClasses.GeneRecordClass.dataset_id,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,attribute,dataset_id,,,,,,,record-internal,, +GeneRecordClasses.GeneRecordClass.attribution,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,attribute,attribution,,,,,,,record-internal,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.gene_source_id,http://edamontology.org/topic_0219,annot and cur,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_source_id,,,,gene,,record,,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_product,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_product,,,,gene,,results,record,download, +GeneRecordClasses.GeneRecordClass.product,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,product,,,,gene,,results,record-internal,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_type,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_type,,,,gene,,results,record,download, +GeneRecordClasses.GeneRecordClass.gene_type,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,gene_type,,,,gene,,,record-internal,download, +GeneRecordClasses.GeneRecordClass.type_with_pseudo,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,type_with_pseudo,,,,gene,,results,record-internal,download, +GeneRecordClasses.GeneRecordClass.gene_ebi_biotype,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,gene_ebi_biotype,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.location_text,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,location_text,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,location_text,,,,transcript,,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_location_text,,,,gene,,results,,download, +GeneRecordClasses.GeneRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,location_text,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.strand_plus_minus,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,strand_plus_minus,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.genome_status,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,genome_status,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.data_release_policy,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,data_release_policy,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.num_user_comments,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,num_user_comments,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.show_apollo,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,show_apollo,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.special_link,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,special_link,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.user_comment_link_url,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,user_comment_link_url,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.apollo_ident,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,apollo_ident,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.organism_full,http://www.w3.org/2002/07/owl#Thing,MetaTableKey,GeneRecordClasses.GeneRecordClass,attribute,organism_full,,,,gene,,,record-internal,download, +GeneRecordClasses.GeneRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,attribute,organism_text,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.gene_name,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_name,,,,gene,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_exon_count,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_exon_count,,,,gene,,results,record,download, +GeneRecordClasses.GeneRecordClass.name,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,name,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.exon_count,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,exon_count,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.apolloHelp,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,apolloHelp,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.is_pseudo,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,is_pseudo,,,,transcript,,results,record,download, +GeneRecordClasses.GeneRecordClass.is_pseudo,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,is_pseudo,,,,gene,,results,record-internal,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_transcript_count,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_transcript_count,,,,gene,,results,record,download, +GeneRecordClasses.GeneRecordClass.transcript_count,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,transcript_count,,,,gene,1,results,record,, +GeneRecordClasses.GeneRecordClass.gene_gff_link,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,gene_gff_link,,,,gene,1,record,,, +GeneRecordClasses.GeneRecordClass.representative_transcript,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,representative_transcript,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.representative_transcript,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,representative_transcript,,,,gene,,,record-internal,, +TranscriptRecordClasses.TranscriptRecordClass.is_deprecated,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,is_deprecated,,,,gene,,,results,download, +GeneRecordClasses.GeneRecordClass.is_deprecated,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,is_deprecated,,,,gene,,,,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_ortholog_number,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_ortholog_number,,,,gene,,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_paralog_number,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_paralog_number,,,,gene,,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_orthomcl_name,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_orthomcl_name,,,,gene,,,,download, +TranscriptRecordClasses.TranscriptRecordClass.orthomcl_link,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,orthomcl_link,,,,gene,,results,,, +GeneRecordClasses.GeneRecordClass.ec_number_warning,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ec_number_warning,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.ec_num_warn,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ec_num_warn,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.ec_inferred_description,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ec_inferred_description,,,,gene,,record-internal,,, +GeneRecordClasses.GeneRecordClass.alphafold_table_help,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,attribute,alphafold_table_help,,,,gene,,record-internal,,, +TranscriptRecordClasses.TranscriptRecordClass.gene_total_hts_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_total_hts_snps,,,,gene,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsynonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_nonsynonymous_snps,,,,gene,4,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_synonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_synonymous_snps,,,,gene,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_noncoding_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_noncoding_snps,,,,gene,2,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_stop_codon_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_stop_codon_snps,,,,gene,5,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsyn_syn_ratio,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_nonsyn_syn_ratio,,,,gene,3,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.uniprot_ids,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,uniprot_ids,,,,transcript,,,,download, +,,,,,,,,,,,,,, +GeneRecordClasses.GeneRecordClass.ortholog_overview,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ortholog_overview,,,,gene,,,record,download, +GeneRecordClasses.GeneRecordClass.ortholog_number,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ortholog_number,,,,gene,,results,,download, +GeneRecordClasses.GeneRecordClass.paralog_number,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,paralog_number,,,,gene,,results,,download, +GeneRecordClasses.GeneRecordClass.orthomcl_link,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,orthomcl_link,,,,gene,,results,record,download, +GeneRecordClasses.GeneRecordClass.show_strains,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,show_strains,,,,gene,,,record-internal,, +GeneRecordClasses.GeneRecordClass.total_hts_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,total_hts_snps,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.hts_nonsynonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_nonsynonymous_snps,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.hts_synonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_synonymous_snps,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.hts_noncoding_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_noncoding_snps,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.hts_stop_codon_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_stop_codon_snps,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.hts_nonsyn_syn_ratio,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_nonsyn_syn_ratio,,,,gene,1,results,record,download, +GeneRecordClasses.GeneRecordClass.uniprot_id,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,uniprot_id,,,,gene,,,,, +GeneRecordClasses.GeneRecordClass.uniprot_id_internal,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,uniprot_id_internal,,,,gene,,,,, +TranscriptRecordClasses.TranscriptRecordClass.uniprot_links,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,uniprot_links,,,,transcript,,results,,, +GeneRecordClasses.GeneRecordClass.uniprot_link,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,uniprot_link,,,,transcript,,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_id,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_entrez_id,,,,transcript,,,,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_link,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_entrez_link,,,,transcript,,results,,, +GeneRecordClasses.GeneRecordClass.entrez_id,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,entrez_id,,,,gene,,,,, +GeneRecordClasses.GeneRecordClass.entrez_link,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,entrez_link,,,,gene,,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.transcript_product,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_product,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.ApolloTranscriptProduct,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,apollo_transcript_description,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.apollo_link_out,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,apollo_link_out,,,,transcript,,results,,, +TranscriptRecordClasses.TranscriptRecordClass.transcript_length,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_length,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.exon_count,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,exon_count,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.five_prime_utr_length,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,five_prime_utr_length,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.three_prime_utr_length,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,three_prime_utr_length,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.strand,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,strand,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.protein_length,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,protein_length,,,,transcript,1,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.cds_length,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,cds_length,,,,transcript,2,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.genomic_sequence_length,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,genomic_sequence_length,,,,transcript,2,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.tm_count,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,tm_count,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.molecular_weight,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,molecular_weight,,,,transcript,4,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.isoelectric_point,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,isoelectric_point,,,,transcript,5,results,record,download, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.cdd_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,cdd_id,,,,transcript,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.cdd_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,cdd_description,,,,transcript,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene3d_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene3d_id,,,,transcript,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.gene3d_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene3d_description,,,,transcript,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.hamap_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,hamap_id,,,,transcript,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.hamap_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,hamap_description,,,,transcript,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.ncbifam_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,ncbifam_id,,,,transcript,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.ncbifam_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,ncbifam_description,,,,transcript,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.panther_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,panther_id,,,,transcript,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.panther_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,panther_description,,,,transcript,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.pfam_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfam_id,,,,transcript,8,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.pfam_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfam_description,,,,transcript,9,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.pirsf_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pirsf_id,,,,transcript,10,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.pirsf_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pirsf_description,,,,transcript,11,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.prints_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prints_id,,,,transcript,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.prints_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prints_description,,,,transcript,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prositeprofiles_id,,,,transcript,12,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prositeprofiles_description,,,,transcript,13,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.sfld_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,sfld_id,,,,transcript,6,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.sfld_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,sfld_description,,,,transcript,7,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.smart_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,smart_id,,,,transcript,14,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.smart_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,smart_description,,,,transcript,15,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.superfamily_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,superfamily_id,,,,transcript,16,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.superfamily_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,superfamily_description,,,,transcript,17,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.interprofamily_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,interprofamily_id,,,,transcript,18,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.interprofamily_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,interprofamily_description,,,,transcript,19,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.signalp_41_probability,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,signalp_41_probability,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.signalp_50_probability,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,signalp_50_probability,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.signalp_60_probability,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,signalp_60_probability,,,,transcript,,results,record,download, +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_function,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_process,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_component,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_function,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_process,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_component,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_id_function,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_id_process,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_id_component,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_id_function,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_id_process,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_id_component,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.ec_numbers,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,ec_numbers,,,,transcript,,results,download,, +TranscriptRecordClasses.TranscriptRecordClass.ec_numbers_derived,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,ec_numbers_derived,,,,transcript,,results,download,download, +TranscriptRecordClasses.TranscriptRecordClass.gene_previous_ids,http://edamontology.org/topic_0219,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_previous_ids,,,,transcript,,results,record,download, +GeneRecordClasses.GeneRecordClass.previous_ids,http://edamontology.org/topic_0219,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,previous_ids,,,,transcript,,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.transcripts_found_per_gene,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcripts_found_per_gene,,,,transcript,,,,, +TranscriptRecordClasses.TranscriptRecordClass.transcript_index_per_gene,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_index_per_gene,,,,transcript,,,,, +TranscriptRecordClasses.TranscriptRecordClass.has_missing_transcripts,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,has_missing_transcripts,,,,transcript,,,,, +TranscriptRecordClasses.TranscriptRecordClass.transcript_sequence,http://edamontology.org/data_2977,Nucleic Acid Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_sequence,,,,transcript,,,download,, +TranscriptRecordClasses.TranscriptRecordClass.protein_sequence,http://edamontology.org/data_2976,Protein Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,protein_sequence,,,,transcript,,,,download, +TranscriptRecordClasses.TranscriptRecordClass.prot_seq_warn,http://edamontology.org/data_2976,Protein Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,prot_seq_warn,,,,transcript,,,,, +TranscriptRecordClasses.TranscriptRecordClass.cds,http://edamontology.org/data_2977,Nucleic Acid Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,cds,,,,transcript,,,,download, +DynSpanRecordClasses.DynSpanRecordClass.Genes,http://edamontology.org/topic_0114,Gene Structure,DynSpanRecordClasses.DynSpanRecordClass,table,Genes,,,,,,results,record,download, +DynSpanRecordClasses.DynSpanRecordClass.ORFs,CodingPotentialCategory,CodingPotentialCategory,DynSpanRecordClasses.DynSpanRecordClass,table,ORFs,,,,,,,,download, +DynSpanRecordClasses.DynSpanRecordClass.SNPs,http://edamontology.org/topic_2885,DNA Polymorphism,DynSpanRecordClasses.DynSpanRecordClass,table,SNPs,,,,,,,,download, +DynSpanRecordClasses.DynSpanRecordClass.ESTs,http://edamontology.org/topic_3308,Transcriptomics,DynSpanRecordClasses.DynSpanRecordClass,table,ESTs,,,,,,,,download, +DynSpanRecordClasses.DynSpanRecordClass.primary_key,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,primary_key,,,,,,results,record-internal,, +DynSpanRecordClasses.DynSpanRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,DynSpanRecordClasses.DynSpanRecordClass,attribute,record_overview,,,,,,record-internal,,, +DynSpanRecordClasses.DynSpanRecordClass.overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,overview,,,,,,,,, +DynSpanRecordClasses.DynSpanRecordClass.otherInfo,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,otherInfo,,,,,,results,record,download, +DynSpanRecordClasses.DynSpanRecordClass.seq_source_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,seq_source_id,,,,,,results,record-internal,download, +DynSpanRecordClasses.DynSpanRecordClass.start_min,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,start_min,,,,,,results,record-internal,download, +DynSpanRecordClasses.DynSpanRecordClass.end_max,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,end_max,,,,,,results,record-internal,download, +DynSpanRecordClasses.DynSpanRecordClass.strand,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,strand,,,,,,results,record-internal,download, +DynSpanRecordClasses.DynSpanRecordClass.length,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,length,,,,,,results,record-internal,, +DynSpanRecordClasses.DynSpanRecordClass.spanGbrowseImageUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,DynSpanRecordClasses.DynSpanRecordClass,attribute,spanGbrowseImageUrl,,,,,,,record, +DynSpanRecordClasses.DynSpanRecordClass.jbrowseUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,DynSpanRecordClasses.DynSpanRecordClass,attribute,jbrowseUrl,,,,,,,record-internal, +DynSpanRecordClasses.DynSpanRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,DynSpanRecordClasses.DynSpanRecordClass,attribute,organism,,,,,,results,record-internal,download, +DynSpanRecordClasses.DynSpanRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,location_text,,,,,,results,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.SequencePieces,http://edamontology.org/topic_0196,Sequence Assembly,SequenceRecordClasses.SequenceRecordClass,table,SequencePieces,,,,,,results,record,download, +SequenceRecordClasses.SequenceRecordClass.Aliases,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,table,Aliases,,,,,,results,record,download, +SequenceRecordClasses.SequenceRecordClass.Centromere,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,table,Centromere,,,,,3,results,record,download +SequenceRecordClasses.SequenceRecordClass.SequenceComments,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,table,SequenceComments,,,,,,results,record,download, +SequenceRecordClasses.SequenceRecordClass.Repeats,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,table,Repeats,,,,,,results,,download +SequenceRecordClasses.SequenceRecordClass.TandemRepeats,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,table,TandemRepeats,,,,,,results,,download +SequenceRecordClasses.SequenceRecordClass.LowComplexity,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,table,LowComplexity,,,,,,results,,download +SequenceRecordClasses.SequenceRecordClass.MercatorTable,http://edamontology.org/topic_0159,Sequence Comparison,SequenceRecordClasses.SequenceRecordClass,table,MercatorTable,,,,,,results,record-internal,, +SequenceRecordClasses.SequenceRecordClass.SequenceGffDbxrefs,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,table,SequenceGffDbxrefs,,,,,,,,, +SequenceRecordClasses.SequenceRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,attribute,source_id,,,,,,,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,attribute,primary_key,,,,,,results,record-internal,, +SequenceRecordClasses.SequenceRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,record_overview,,,,,,record-internal,,, +SequenceRecordClasses.SequenceRecordClass.overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,overview,,,,,,,,, +SequenceRecordClasses.SequenceRecordClass.project_id,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,project_id,,,,,,,record-internal,, +SequenceRecordClasses.SequenceRecordClass.lc_project_id,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,lc_project_id,,,,,,,record-internal,, +SequenceRecordClasses.SequenceRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,attribute,organism,,,,,,results,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.Taxonomy,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,table,Taxonomy,,,,,,,record,, +SequenceRecordClasses.SequenceRecordClass.dnaContextUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,dnaContextUrl,,,,,1,,record, +SequenceRecordClasses.SequenceRecordClass.jbrowseUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,jbrowseUrl,,,,,1,,record-internal, +SequenceRecordClasses.SequenceRecordClass.JBrowse,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,JBrowse,,,,,3,results,record-internal,download +SequenceRecordClasses.SequenceRecordClass.sequence_retrieval,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,sequence_retrieval,,,,,3,results,record,download +SequenceRecordClasses.SequenceRecordClass.download_link,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,download_link ,,,,,,results,record,download +SequenceRecordClasses.SequenceRecordClass.chromosome,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,chromosome,,,,,,results,record-internal,, +SequenceRecordClasses.SequenceRecordClass.description,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,description,,,,,,,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.a_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,a_count,,,,,,results,record-internal,download +SequenceRecordClasses.SequenceRecordClass.c_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,c_count,,,,,,results,record-internal,download +SequenceRecordClasses.SequenceRecordClass.g_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,g_count,,,,,,results,record-internal,download +SequenceRecordClasses.SequenceRecordClass.t_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,t_count,,,,,,results,record-internal,download +SequenceRecordClasses.SequenceRecordClass.other_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,other_count,,,,,,results,record-internal,download +SequenceRecordClasses.SequenceRecordClass.formatted_length,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,formatted_length,,,,,,results,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.at_percent,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,at_percent,,,,,,results,record-internal, +SequenceRecordClasses.SequenceRecordClass.organism_full,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,attribute,organism_full,,,,gene,,,record-internal,, +SequenceRecordClasses.SequenceRecordClass.chromosome_order_num,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,chromosome_order_num,,,,,,results,record-internal,, +SequenceRecordClasses.SequenceRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,attribute,formatted_organism,,,,,,,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.sequence_description,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,sequence_description,,,,,,results,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.genbank_accession,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,attribute,genbank_accession,,,,,,,,download, +SequenceRecordClasses.SequenceRecordClass.sequence_type,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,sequence_type,,,,,,results,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.has_msa,http://edamontology.org/topic_0159,Sequence Comparison,SequenceRecordClasses.SequenceRecordClass,attribute,has_msa,,,,,,,,download, +SequenceRecordClasses.SequenceRecordClass.gene_count,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,gene_count,,,,,,results,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.description,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,description,,,,,,results,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.is_annotated,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,is_annotated,,,,,,,,download, +SequenceRecordClasses.SequenceRecordClass.release_policy,http://edamontology.org/topic_3068,Literature and Reference,SequenceRecordClasses.SequenceRecordClass,attribute,release_policy,,,,,,,record-internal,, +SequenceRecordClasses.SequenceRecordClass.attribution,http://edamontology.org/topic_3068,Literature and Reference,SequenceRecordClasses.SequenceRecordClass,attribute,attribution,,,,,,,record-internal,download, +SequenceRecordClasses.SequenceRecordClass.user_comment_link_url,http://www.w3.org/2002/07/owl#Thing,thing,SequenceRecordClasses.SequenceRecordClass,attribute,user_comment_link_url,,,,,,,record-internal,, +EstRecordClasses.EstRecordClass.ReferenceInfo,http://edamontology.org/topic_3068,Literature and Reference,EstRecordClasses.EstRecordClass,table,ReferenceInfo,,,,,,results,record,download, +EstRecordClasses.EstRecordClass.AlignmentInfo,http://edamontology.org/topic_0159,Sequence Comparison,EstRecordClasses.EstRecordClass,table,AlignmentInfo,,,,,,results,record,download, +EstRecordClasses.EstRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,EstRecordClasses.EstRecordClass,attribute,primary_key,,,,,,results,record-internal,, +EstRecordClasses.EstRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,record_overview,,,,,,record-internal,,, +EstRecordClasses.EstRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,organism,,,,,,results,record-internal,, +EstRecordClasses.EstRecordClass.overview,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,overview,,,,,,,record-internal,, +EstRecordClasses.EstRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,EstRecordClasses.EstRecordClass,attribute,source_id,,,,,,,record-internal,, +EstRecordClasses.EstRecordClass.a_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,a_count,,,,,,results,record,download +EstRecordClasses.EstRecordClass.c_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,c_count,,,,,,results,record,download +EstRecordClasses.EstRecordClass.g_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,g_count,,,,,,results,record,download +EstRecordClasses.EstRecordClass.t_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,t_count,,,,,,results,record,download +EstRecordClasses.EstRecordClass.other_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,other_count,,,,,,results,record,download +EstRecordClasses.EstRecordClass.length,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,EstRecordClasses.EstRecordClass,attribute,length,,,,,,results,record-internal,download, +EstRecordClasses.EstRecordClass.dbest_name,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,dbest_name,,,,,,results,record-internal,download, +EstRecordClasses.EstRecordClass.vector,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,vector,,,,,,results,record-internal,download, +EstRecordClasses.EstRecordClass.stage,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,stage,,,,,,results,record-internal,download, +EstRecordClasses.EstRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,organism_text,,,,,,,record-internal,download, +EstRecordClasses.EstRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,formatted_organism,,,,,,,record-internal,, +EstRecordClasses.EstRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,ncbi_tax_id,,,,,,,record-internal,download, +EstRecordClasses.EstRecordClass.sequence,http://edamontology.org/data_2977,Nucleic Acid Sequence,EstRecordClasses.EstRecordClass,attribute,sequence,,,,,,,record,download, +EstRecordClasses.EstRecordClass.sequence_length,http://edamontology.org/data_2977,Nucleic Acid Sequence,EstRecordClasses.EstRecordClass,attribute,sequence_length,,,,,1,,record,download, +JunctionRecordClasses.JunctionRecordClass.SampleInfo,http://edamontology.org/topic_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,table,SampleInfo,,,,,,results,record,download, +##JunctionRecordClasses.JunctionRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,JunctionRecordClasses.JunctionRecordClass,attribute,primary_key,,,,,,results,record-internal,, +##JunctionRecordClasses.JunctionRecordClass.intron_feature_id,http://edamontology.org/data_3345,Data identity and mapping,JunctionRecordClasses.JunctionRecordClass,attribute,intron_feature_id,,,,,,,record-internal,download, +JunctionRecordClasses.JunctionRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,JunctionRecordClasses.JunctionRecordClass,attribute,record_overview,,,,,,record-internal,,, +JunctionRecordClasses.JunctionRecordClass.location,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,location,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.sequence_source_id,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,sequence_source_id,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.segment_start,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,segment_start,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.segment_end,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,segment_end,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.is_reversed,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,is_reversed,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.total_unique,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,total_unique,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.total_isrpm,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,total_isrpm,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.gene_source_id,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,gene_source_id,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.annotated_intron,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,annotated_intron,,,,,,,record,download, +JunctionRecordClasses.JunctionRecordClass.percent_max,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,,,,,,,,record,download, +##JunctionRecordClasses.JunctionRecordClass.#,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,#,,,,,,,record,download, +LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.SampleInfo,http://edamontology.org/topic_0080,Gene Models,LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass,table,SampleInfo,,,,,,results,record,download, +LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.record_overview,http://edamontology.org/topic_0080,Gene Models,LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass,attribute,record_overview,,,,,,,record-internal,, +PopsetRecordClasses.PopsetRecordClass.Reference,http://edamontology.org/topic_3068,Literature and Reference,PopsetRecordClasses.PopsetRecordClass,table,Reference,,,,,,results,record,download, +PopsetRecordClasses.PopsetRecordClass.GeneOverlap,http://edamontology.org/topic_0159,Sequence Comparison,PopsetRecordClasses.PopsetRecordClass,table,GeneOverlap,,,,,,results,record,download, +PopsetRecordClasses.PopsetRecordClass.PopsetComments,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,PopsetComments,,,,,,results,record,download, +PopsetRecordClasses.PopsetRecordClass.organismTable,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,table,organismTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.descriptionTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,descriptionTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.productTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,productTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.strainTable,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,table,strainTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.hostTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,hostTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.noteTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,noteTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.isolation_sourceTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,isolation_sourceTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.geographic_locationTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,geographic_locationTable,,,,,,results,,download, +PopsetRecordClasses.PopsetRecordClass.primary_key,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,primary_key,,,,,,results,record-internal,, +PopsetRecordClasses.PopsetRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,record_overview,,,,,,record-internal,,, +PopsetRecordClasses.PopsetRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,PopsetRecordClasses.PopsetRecordClass,attribute,source_id,,,,,,,,download, +PopsetRecordClasses.PopsetRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,attribute,organism,,,,,,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.strain,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,attribute,strain,,,,,,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.specific_host,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,specific_host,,,,,1,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.curated_isolation_source,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,curated_isolation_source,,,,,5,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.isolation_source,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,isolation_source,,,,,4,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.geographic_location,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,geographic_location,,,,,2,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.curated_geographic_location,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,curated_geographic_location,,,,,3,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.product,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,product,,,,,7,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.description,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,description,,,,,6,results,record-internal,download, +PopsetRecordClasses.PopsetRecordClass.note,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,note,,,,,,,,download, +PopsetRecordClasses.PopsetRecordClass.sequence,http://edamontology.org/data_2977,Nucleic Acid Sequence,PopsetRecordClasses.PopsetRecordClass,attribute,sequence,,,,,,,record,download, +PopsetRecordClasses.PopsetRecordClass.sequence_length,http://edamontology.org/data_2977,Nucleic Acid Sequence,PopsetRecordClasses.PopsetRecordClass,attribute,sequence_length,,,,,1,,record,download, +PopsetRecordClasses.PopsetRecordClass.user_comment_link_url,http://www.w3.org/2002/07/owl#Thing,thing,PopsetRecordClasses.PopsetRecordClass,attribute,user_comment_link_url,,,,,,,record-internal,, +OrfRecordClasses.OrfRecordClass.Locations,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,table,Locations,,,,,,results,record-internal,download, +OrfRecordClasses.OrfRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,OrfRecordClasses.OrfRecordClass,attribute,primary_key,,,,,,results,,, +OrfRecordClasses.OrfRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,OrfRecordClasses.OrfRecordClass,attribute,record_overview,,,,,,record-internal,,, +OrfRecordClasses.OrfRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,OrfRecordClasses.OrfRecordClass,attribute,organism,,,,,,results,,download, +OrfRecordClasses.OrfRecordClass.orf_location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_location_text,,,,,2,results,,, +OrfRecordClasses.OrfRecordClass.overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrfRecordClasses.OrfRecordClass,attribute,overview,,,,,,,,, +OrfRecordClasses.OrfRecordClass.jbrowseTracks,http://edamontology.org/topic_0160,Sequence sites, features and motifs,OrfRecordClasses.OrfRecordClass,attribute,jbrowseTracks,,,,,,,, +OrfRecordClasses.OrfRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,OrfRecordClasses.OrfRecordClass,attribute,source_id,,,,,,,,download, +OrfRecordClasses.OrfRecordClass.nas_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,nas_id,,,,,1,results,,download, +OrfRecordClasses.OrfRecordClass.orf_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_start,,,,,,,,download, +OrfRecordClasses.OrfRecordClass.orf_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_end,,,,,,,,download, +OrfRecordClasses.OrfRecordClass.orf_start_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_start_text,,,,,3,results,,download, +OrfRecordClasses.OrfRecordClass.orf_end_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_end_text,,,,,4,results,,download, +OrfRecordClasses.OrfRecordClass.orf_strand,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_strand,,,,,5,results,,download, +OrfRecordClasses.OrfRecordClass.orfGbrowseImageUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orfGbrowseImageUrl,,,,,,,record,, +OrfRecordClasses.OrfRecordClass.jbrowseUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,jbrowseUrl,,,,,,,record-internal,, +SnpRecordClasses.SnpRecordClass.context_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,context_start,,,,,,,record-internal,, +SnpRecordClasses.SnpRecordClass.context_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,context_end,,,,,,,record-internal,, +SnpRecordClasses.SnpRecordClass.align_context_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,align_context_start,,,,,,,record-internal,, +SnpRecordClasses.SnpRecordClass.align_context_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,align_context_end,,,,,,,record-internal,, +SnpRecordClasses.SnpRecordClass.snps_alignment_form,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,snps_alignment_form,,,,,,,record,, +SnpRecordClasses.SnpRecordClass.lc_project_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,lc_project_id,,,,,,,record-internal,, +SnpRecordClasses.SnpRecordClass.snpGbrowseImageUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,snpGbrowseImageUrl,,,,,,,record,, +SnpRecordClasses.SnpRecordClass.jbrowseUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,jbrowseUrl,,,,,,,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.snpChipGbrowseImageUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,snpChipGbrowseImageUrl,,,,,,,record,, +SnpChipRecordClasses.SnpChipRecordClass.jbrowseUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,jbrowseUrl,,,,,,,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SnpChipRecordClasses.SnpChipRecordClass,attribute,record_overview,,,,,,record-internal,,, +SnpChipRecordClasses.SnpChipRecordClass.context_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,context_start,,,,,,,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.context_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,context_end,,,,,,,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.lc_project_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,lc_project_id,,,,,,,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.na_sequence_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,na_sequence_id,,,,,,,record-internal,download, +OrfRecordClasses.OrfRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,OrfRecordClasses.OrfRecordClass,attribute,organism_text,,,,,,,,, +OrfRecordClasses.OrfRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,OrfRecordClasses.OrfRecordClass,attribute,formatted_organism,,,,,,results,,download, +OrfRecordClasses.OrfRecordClass.sequence,http://edamontology.org/data_2976,Protein Sequence,OrfRecordClasses.OrfRecordClass,attribute,sequence,,,,,,,record,download, +OrfRecordClasses.OrfRecordClass.sequence_length,http://edamontology.org/data_2976,Protein Sequence,OrfRecordClasses.OrfRecordClass,attribute,sequence_length,,,,,,,record,, +OrfRecordClasses.OrfRecordClass.attribution,http://edamontology.org/topic_3068,Literature and Reference,OrfRecordClasses.OrfRecordClass,attribute,attribution,,,,,,,record-internal,download, +PathwayRecordClasses.PathwayRecordClass.CompoundsMetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,CompoundsMetabolicPathways,,,,,,,record,download, +PathwayRecordClasses.PathwayRecordClass.PathwayReactionsXrefs,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayReactionsXrefs,,,,,,,record,, +PathwayRecordClasses.PathwayRecordClass.PathwayGraphs,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayGraphs,,,,,,,record-internal,, +PathwayRecordClasses.PathwayRecordClass.PathwayNodes,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayNodes,,,,,,,record-internal,, +PathwayRecordClasses.PathwayRecordClass.PathwayEdges,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayEdges,,,,,,,record-internal,, +PathwayRecordClasses.PathwayRecordClass.ECNumberOrganismMap,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,ECNumberOrganismMap,,,,,,,,, +##PathwayRecordClasses.PathwayRecordClass.CompoundLabel,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,CompoundLabel,,,,,,results,record,download, +PathwayRecordClasses.PathwayRecordClass.source_id,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,source_id,,,,,,,record-internal,, +PathwayRecordClasses.PathwayRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,PathwayRecordClasses.PathwayRecordClass,attribute,record_overview,,,,,,record-internal,,, +PathwayRecordClasses.PathwayRecordClass.project_id,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,project_id,,,,,,,record-internal,download, +PathwayRecordClasses.PathwayRecordClass.source,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,source,,,,,,results,record-internal,download, +PathwayRecordClasses.PathwayRecordClass.primary_key,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,primary_key,,,,,,,record-internal,download, +PathwayRecordClasses.PathwayRecordClass.name,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,name,,,,,,results,record-internal,download, +PathwayRecordClasses.PathwayRecordClass.total_enzyme_count,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,total_enzyme_count,,,,,,results,record-internal,download, +PathwayRecordClasses.PathwayRecordClass.total_compound_count,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,total_compound_count,,,,,,results,record-internal,download, +PathwayRecordClasses.PathwayRecordClass.url,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,url,,,,,,,record-internal,, +##PathwayRecordClasses.PathwayRecordClass.external_url,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,external_url,,,,,,,record,, +PathwayRecordClasses.PathwayRecordClass.drawing,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,drawing,,,,,,,record,, +PathwayRecordClasses.PathwayRecordClass.external_db_name,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,external_db_name,,,,,,,record-internal,, +PathwayRecordClasses.PathwayRecordClass.external_db_version,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,external_db_version,,,,,,,record-internal,download, +SnpRecordClasses.SnpRecordClass.HTSStrains,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,table,HTSStrains,,,,,3,,record,, +SnpRecordClasses.SnpRecordClass.AlleleCount,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,table,AlleleCount,,,,,1,,record,, +SnpRecordClasses.SnpRecordClass.CountrySummary,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,table,CountrySummary,,,,,2,,record,download, +SnpRecordClasses.SnpRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,SnpRecordClasses.SnpRecordClass,attribute,primary_key,,,,,,results,,, +SnpRecordClasses.SnpRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SnpRecordClasses.SnpRecordClass,attribute,record_overview,,,,,,record-internal,,, +SnpRecordClasses.SnpRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,organism,,,,,,,,, +SnpRecordClasses.SnpRecordClass.snp_overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SnpRecordClasses.SnpRecordClass,attribute,snp_overview,,,,,,,,, +SnpRecordClasses.SnpRecordClass.gene_context,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SnpRecordClasses.SnpRecordClass,attribute,gene_context,,,,,,,, +SnpRecordClasses.SnpRecordClass.seq_source_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,seq_source_id,,,,,,record-internal,,download, +SnpRecordClasses.SnpRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,location_text,,,,,,,,download, +SnpRecordClasses.SnpRecordClass.snp_location,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,snp_location,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.chromosome_order_num,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,chromosome_order_num,,,,,,,,download, +SnpRecordClasses.SnpRecordClass.location,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,location,,,,,,,,, +SnpRecordClasses.SnpRecordClass.reference_strain,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,reference_strain,,,,,,,,, +SnpRecordClasses.SnpRecordClass.reference_na,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,reference_na,,,,,,,,, +SnpRecordClasses.SnpRecordClass.reference_aa,http://edamontology.org/topic_2886,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,reference_aa,,,,,,,,, +SnpRecordClasses.SnpRecordClass.ref_aa_with_position,http://edamontology.org/topic_2887,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,ref_aa_with_position,,,,,,,record-internal,download, +SnpRecordClasses.SnpRecordClass.lflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,lflank,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,allele,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.rflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,rflank,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.snp_context,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,snp_context,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.sampleId,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,sampleId,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.snp_context_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,snp_context_gene_strand,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.gene_source_id,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,gene_source_id,,,,,,download,record-internal,, +SnpRecordClasses.SnpRecordClass.linkedGeneId,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,linkedGeneId,,,,,,results,record-internal,, +SnpRecordClasses.SnpRecordClass.gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,gene_strand,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.is_coding,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,is_coding,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.position_in_CDS,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,position_in_CDS,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.position_in_protein,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,position_in_protein,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.has_nonsynonymous_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,has_nonsynonymous_allele,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.lflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,lflank_gene_strand,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.allele_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,allele_gene_strand,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.rflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,rflank_gene_strand,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.major_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_allele_frequency,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.minor_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_allele_frequency,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.major_allele_and_freq,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_allele_and_freq,,,,,,,record-internal,download, +SnpRecordClasses.SnpRecordClass.minor_allele_and_freq,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_allele_and_freq,,,,,,,record-internal,download, +SnpRecordClasses.SnpRecordClass.distinct_strain_count,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,distinct_strain_count,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.major_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_allele,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.minor_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_allele,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.major_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_product,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.minor_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_product,,,,,,results,record-internal,download, +SnpRecordClasses.SnpRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,organism_text,,,,,,,record-internal,, +SnpRecordClasses.SnpRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,formatted_organism,,,,,,results,record-internal,, +SnpRecordClasses.SnpRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,ncbi_tax_id,,,,,,,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.StrainsWithMetaData,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,table,StrainsWithMetaData,,,,,3,,record,download, +SnpChipRecordClasses.SnpChipRecordClass.OtherSNPs,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,table,OtherSNPs,,,,,2,,record,download, +SnpChipRecordClasses.SnpChipRecordClass.CountrySummary,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,table,CountrySummary,,,,,1,,record,download, +SnpChipRecordClasses.SnpChipRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,SnpChipRecordClasses.SnpChipRecordClass,attribute,primary_key,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,organism,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.snp_overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_overview,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.gene_context,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SnpChipRecordClasses.SnpChipRecordClass,attribute,gene_context,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.type,http://edamontology.org/topic_0219,Curation and Annotation,SnpChipRecordClasses.SnpChipRecordClass,attribute,type,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.seq_source_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,seq_source_id,,,,,,,,download, +SnpChipRecordClasses.SnpChipRecordClass.start_min_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,start_min_text,,,,,,,,download, +SnpChipRecordClasses.SnpChipRecordClass.snp_location,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_location,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.chromosome_order_num,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,chromosome_order_num,,,,,,,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.start_min,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,start_min,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.reference_strain,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,reference_strain,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.reference_na,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,reference_na,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.reference_aa,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,reference_aa,,,,,,,,download, +SnpChipRecordClasses.SnpChipRecordClass.lflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,lflank,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,allele,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.rflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,rflank,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.gene_source_id,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,gene_source_id,,,,,,,,, +SnpChipRecordClasses.SnpChipRecordClass.linkedGeneId,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,linkedGeneId,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.gene_strand,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,gene_strand,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.is_coding,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,is_coding,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.position_in_CDS,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,position_in_CDS,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.position_in_protein,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,position_in_protein,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.has_nonsynonymous_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,has_nonsynonymous_allele,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.lflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,lflank_gene_strand,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.allele_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,allele_gene_strand,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.rflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,rflank_gene_strand,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.major_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_allele_frequency,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.minor_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_allele_frequency,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.major_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_allele,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.major_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_product,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.minor_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_allele,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.minor_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_product,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.distinct_strain_count,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,distinct_strain_count,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.snp_context,http://edamontology.org/topic_2886,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_context,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.snp_context_gene_strand,http://edamontology.org/topic_2887,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_context_gene_strand,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.major_allele_and_freq,http://edamontology.org/topic_2888,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_allele_and_freq,,,,,,,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.minor_allele_and_freq,http://edamontology.org/topic_2889,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_allele_and_freq,,,,,,,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.ref_aa_with_position,http://edamontology.org/topic_2890,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,ref_aa_with_position,,,,,,results,record-internal,download, +SnpChipRecordClasses.SnpChipRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,organism_text,,,,,,,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,formatted_organism,,,,,,results,record-internal,, +SnpChipRecordClasses.SnpChipRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,ncbi_tax_id,,,,,,,,download, +CompoundRecordClasses.CompoundRecordClass.Properties,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Properties,,,,,,results,record,download, +CompoundRecordClasses.CompoundRecordClass.IupacNames,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,IupacNames,,,,,,results,record,download, +CompoundRecordClasses.CompoundRecordClass.Definition,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Definition,,,,,,results,record,download, +CompoundRecordClasses.CompoundRecordClass.SecondaryIds,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,SecondaryIds,,,,,,results,record,download, +CompoundRecordClasses.CompoundRecordClass.Synonyms,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Synonyms,,,,,,results,record,download, +CompoundRecordClasses.CompoundRecordClass.CompoundName,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,CompoundName,,,,,,,Record-internal,, +CompoundRecordClasses.CompoundRecordClass.CompoundsMetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,CompoundRecordClasses.CompoundRecordClass,table,CompoundsMetabolicPathways,,,,,2,results,record,download, +CompoundRecordClasses.CompoundRecordClass.MetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,CompoundRecordClasses.CompoundRecordClass,table,MetabolicPathways,,,,,1,results,record,download, +CompoundRecordClasses.CompoundRecordClass.Structures,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Structures,,,,,, ,record,, +CompoundRecordClasses.CompoundRecordClass.MassSpecGraphs,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,MassSpecGraphs,,,,,,results,record,download, +CompoundRecordClasses.CompoundRecordClass.MassSpecGraphsDataTable,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,MassSpecGraphsDataTable,,,,,,,record-internal,download, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.primary_key,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,primary_key,,,,,,results,,, +CompoundRecordClasses.CompoundRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,CompoundRecordClasses.CompoundRecordClass,attribute,record_overview,,,,,,record-internal,,, +CompoundRecordClasses.CompoundRecordClass.overview,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,overview,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.definition,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,definition,,,,,,results,,download, +CompoundRecordClasses.CompoundRecordClass.formula,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,formula,,,,,,results,,download, +CompoundRecordClasses.CompoundRecordClass.secondary_ids,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,secondary_ids,,,,,,results,,download, +CompoundRecordClasses.CompoundRecordClass.name,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,name,,,,,,results,,download, +CompoundRecordClasses.CompoundRecordClass.synonyms,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,synonyms,,,,,,,,, +CompoundRecordClasses.CompoundRecordClass.default_structure,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,default_structure,,,,,,,record-internal,, +,,,,,,,,,,,,,download, +DatasourceRecordClasses.DatasourceRecordClass.Publications,http://edamontology.org/topic_3068,Literature and Reference,DatasourceRecordClasses.DatasourceRecordClass,table,Publications,,,,datasource,,record,download,, +DatasourceRecordClasses.DatasourceRecordClass.References,http://edamontology.org/topic_3068,Literature and Reference,DatasourceRecordClasses.DatasourceRecordClass,table,References,,,,datasource,,record,download,, +DatasourceRecordClasses.DatasourceRecordClass.Version,http://edamontology.org/topic_0219,Curation and Annotation,DatasourceRecordClasses.DatasourceRecordClass,table,Version,,,,datasource,,record,download,, +OrganismRecordClasses.OrganismRecordClass.SequenceCounts,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,table,SequenceCounts,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.GeneCounts,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,table,GeneCounts,,,,,,results,record,, +OrganismRecordClasses.OrganismRecordClass.GenomeSequencingAndAnnotationAttribution,GenomicSequencePropertiesCategory,Genomic Sequence Properties Category,OrganismRecordClasses.OrganismRecordClass,table,GenomeSequencingAndAnnotationAttribution,,,,,4,results,record,, +OrganismRecordClasses.OrganismRecordClass.primary_key,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,primary_key,,,,,,results,,download, +OrganismRecordClasses.OrganismRecordClass.overview,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,overview,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,record_overview,,,,,,record-internal,,, +OrganismRecordClasses.OrganismRecordClass.URLGenomeFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLGenomeFasta,,,,,,,,download, +OrganismRecordClasses.OrganismRecordClass.URLtranscriptFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLtranscriptFasta,,,,,,,,download , +OrganismRecordClasses.OrganismRecordClass.URLcdsFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLcdsFasta,,,,,,,,download , +OrganismRecordClasses.OrganismRecordClass.URLproteinFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLproteinFasta,,,,,,,,download , +,,,,,,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.URLgff,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,URLgff,,,,,,,,download, +,,,,,,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.strain,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,strain,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.contigCount,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,contigCount,,,,,3,results,record,download, +OrganismRecordClasses.OrganismRecordClass.supercontigCount,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,supercontigCount,,,,,2,results,record,download, +OrganismRecordClasses.OrganismRecordClass.chromosomeCount,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,chromosomeCount,,,,,1,results,record,download, +OrganismRecordClasses.OrganismRecordClass.genecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,genecount,,,,,,,record,download, +OrganismRecordClasses.OrganismRecordClass.genecount_number,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,genecount_number,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.codinggenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,codinggenecount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.pseudogenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,pseudogenecount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.othergenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,othergenecount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.ecnumbercount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,ecnumbercount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.gocount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,gocount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.popsetcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,popsetcount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.rnaseqcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,rnaseqcount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.chipchipgenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,chipchipgenecount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.rtpcrcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,rtpcrcount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.estcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,estcount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.snpcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,snpcount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.orthologcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,orthologcount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.arraygenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,arraygenecount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.proteomicscount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,proteomicscount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.tfbscount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,tfbscount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.communitycount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,communitycount,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.download_link,http://edamontology.org/topic_0160,http://edamontology.org/data_0916,Gene report,attribute,download_link ,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.organism_name,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,organism_name,,,,,,,,results, +OrganismRecordClasses.OrganismRecordClass.species,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,species,,,,,,results,record,download, +OrganismRecordClasses.OrganismRecordClass.is_annotated_genome,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,is_annotated_genome,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.is_reference_strain,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,is_reference_strain,,,,,,results,,download, +OrganismRecordClasses.OrganismRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,organism,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.organism_full,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,organism_full,,,,gene,,,record-internal,, +OrganismRecordClasses.OrganismRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,ncbi_tax_id,,,,,,,,download, +OrganismRecordClasses.OrganismRecordClass.species_ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,species_ncbi_tax_id,,,,,,,,download, +OrganismRecordClasses.OrganismRecordClass.ncbi_taxon_url,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,ncbi_taxon_url,,,,,,results,record,, +OrganismRecordClasses.OrganismRecordClass.species_ncbi_taxon_url,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,species_ncbi_taxon_url,,,,,,results,record,, +OrganismRecordClasses.OrganismRecordClass.genome_source,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,genome_source,,,,,,results,,download, +OrganismRecordClasses.OrganismRecordClass.annotation_source,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,annotation_source,,,,,,results,,download, +OrganismRecordClasses.OrganismRecordClass.project_id,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,project_id,,,,,,results, ,download, +OrganismRecordClasses.OrganismRecordClass.database_version,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,database_version,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.busco_genome,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,busco_genome,,,,,,results,,download, +OrganismRecordClasses.OrganismRecordClass.busco_protein,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,busco_protein,,,,,,results,,download, +OrganismRecordClasses.OrganismRecordClass.busco_lineage_dataset,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,busco_lineage_dataset,,,,,,results,,download, +,,,,,,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.megabps,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,megabps,,,,,,,,download, +OrganismRecordClasses.OrganismRecordClass.megabpsurl,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,megabpsurl,,,,,,results,,, +OrganismRecordClasses.OrganismRecordClass.genecounturl,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,genecounturl,,,,,,results,record,, +OrganismRecordClasses.OrganismRecordClass.isOrganellar_flag,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,isOrganellar_flag,,,,,,results,,download, +OrganismRecordClasses.OrganismRecordClass.is_published,http://edamontology.org/topic_3068,Literature and Reference,OrganismRecordClasses.OrganismRecordClass,attribute,is_published,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.genome_version,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,genome_version,,,,,,record-internal,results,download, +OrganismRecordClasses.OrganismRecordClass.annotation_version,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,annotation_version,,,,,,record-internal,results,download, +OrganismRecordClasses.OrganismRecordClass.release_policy,http://edamontology.org/topic_3068,Literature and Reference,OrganismRecordClasses.OrganismRecordClass,attribute,release_policy,,,,,,,,, +OrganismRecordClasses.OrganismRecordClass.is_in_apollo,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,is_in_apollo,,,,,,,,download, +OrganismRecordClasses.OrganismRecordClass.apollolink,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,apollolink,,,,,,results,,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.host,http://edamontology.org/topic_0637,Taxonomy,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,host,,,,,,results,record,download, +RflpIsolateRecordClasses.RflpIsolateRecordClass.geographic_location,http://edamontology.org/topic_0219,Curation and Annotation,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,geographic_location,,,,,2,results,record,download, +RflpIsolateRecordClasses.RflpIsolateRecordClass.organ,http://edamontology.org/topic_3067,Curation and Annotation,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,organ,,,,,2,results,record,, +UserFileRecords.UserFile.filename_link,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,filename_link,,,,,,results,,, +UserFileRecords.UserFile.title,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,title,,,,,,results,,, +UserFileRecords.UserFile.notes,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,notes,,,,,,results,,, +UserFileRecords.UserFile.filesize,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,filesize,,,,,,results,,, +UserFileRecords.UserFile.format,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,format,,,,,,results,,, +UserFileRecords.UserFile.uploadtime,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,uploadtime,,,,,,results,,, +derisi_timeseries_pie,http://purl.obolibrary.org/obo/OBI_0001985,,PathwayRecordClasses.PathwayRecordClass,attribute,derisi_timeseries_pie,,,,,,record-internal,graph-internal,, +## TEMPLATE_ANCHOR datasetCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR chipchipCategories,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR graphTextAttributeCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR profileSampleAttributesCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR profileMinMaxAttributesCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR profileMinMaxAttributesRnaSenseCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR profileMinMaxAttributesRnaAntisenseCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR phenotypeEdaAttributeCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR cellularLocalizationEdaAttributeCategory,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR metaboliteGraphTextAttributeCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR graphTextAttributeCategoryPathwayRecord,,,,,,,,,,,,,, +searchCategory-phenotype-text,http://edamontology.org/topic_3298,Phenomics,,,text-phenotype,Phenotype Text,PT,Search for genes based on text searching phenotype data.,,,internal,,, +searchCategory-phenotype-molecular,http://edamontology.org/topic_3298,Phenomics,,,molecular-phenotype-data,Molecular Phenotype,MP,Search for genes based on phenotype data,,,internal,,, +searchCategory-cellular-localization-quantitative,http://edamontology.org/topic_0140,Protein targeting and localisation,,,quantitative-cellular-localization,Quantitative Cellular Localization,QCL,Search for genes based on quantitative cellular localization data,,,internal,,, +searchCategory-cellular-localization-goassoc,http://edamontology.org/topic_0140,Protein targeting and localisation,,,goassoc-cellular-localization,GO Terms from Cellular Localization,GOCL,Search for genes based on GO Terms from cellular localization data,,,internal,,, +searchCategory-longread,http://edamontology.org/topic_0114,Gene Structure,,,longread,Long Read Evidence,LR,Search for genes based on long-read RNASeq evidence,,,internal,,, +searchCategory-longreadspan,,,,,longreadspan,Long Read Span Evidence,LR,Search for genomic segments based on long-read RNASeq evidence,,,internal,,, +searchCategory-phenotype-curated,http://edamontology.org/topic_3298,Phenomics,,,curated-phenotype,Curated Phenotype,CP,Search for genes based on curated phenotype data sets,,,internal,,, +searchCategory-association-to-genomic-segments,http://edamontology.org/topic_3298,Phenomics,,,association-to-genomic-segments,Association to Genomic Segments,AGS,Search for genes which are associated to genomic segments by eQTL,,,internal,,, +searchCategory-similarity-of-association,http://edamontology.org/topic_3298,Phenomics,,,similarity-of-association,Similarity of Association,SA,Search for genes by similarity of association.,,,internal,,, +searchCategory-T-test-2-sample-unequal-variance,http://edamontology.org/topic_0804,immunoproteins,genes,antigens,,,Limma Volcano,Limma Volcano,LIMV,Search for genes based on differential protein abundance calculated by Limma, visualised with a volcano plot,,,internal +searchCategory-putative-function,http://edamontology.org/topic_3298,Phenomics,,,putative-function,Putative Function,PF,Search for genes based on comparisons of RNAi target sequencing coverage.,,,internal,,, +searchCategory-eqtl-similarity,http://edamontology.org/topic_3298,Phenomics,,,eqtl-similarity,Similarity,S,Search for genes which have a similar profile for an experiment.,,,internal,,, +searchCategory-similarity,http://edamontology.org/topic_3308,Transcriptomics,,,similarity,Similarity,S,Search for genes which have a similar profile for an experiment.,,,internal,,, +searchCategory-proteomics-quantitative-ratio,http://edamontology.org/topic_0121,Proteomics,,,proteomics-quantitative-ratio,Quantitative Ratio,QR,Search for genes which are differentiated by log2 ratio of heavy to light to determine confidence Log2(H/L).,,,internal,,, +searchCategory-proteomics-direct-comparison,http://edamontology.org/topic_0121,Proteomics,,,proteomics-direct-comparison,Direct Comparison,DC,Search for genes which are differentially expressed in a 2 state direct comparison.,,,internal,,, +searchCategory-functional-gene-list,http://edamontology.org/topic_1775,Function prediction,,,functional-gene-list,Gene List,GL,Search for genes which were included in a gene list.,,,internal,,, +searchCategory-subcellular-gene-list,http://edamontology.org/topic_0140,Protein targeting and localization,,,subcellular-gene-list,Gene List,GL,Search for genes which were included in a gene list.,,,internal,,, +searchCategory-proteomics-direct-conf-comparison,http://edamontology.org/topic_0121,Proteomics,,,proteomics-direct-conf-comparison,Direct Confidence Comparison,DCC,Search for genes which are differentially expressed in a 2 state direct comparison with confidence.,,,internal,,, +searchCategory-transcriptomics-direct-comparison,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-direct-comparison,Direct Comparison,DC,Search for genes which are differentially expressed in a 2 state direct comparison.,,,internal,,, +searchCategory-coexpression,http://edamontology.org/topic_3308,Transcriptomics,,,coexpression,Coexpression,C,Search for genes which have positive or negative correlations with a set of genes.,,,internal,,, +searchCategory-splice-site-loc,http://edamontology.org/topic_3308,Transcriptomics,,,splice-site-loc,Splice Site Loc,SSL,Search for genes near experimental splice site locations.,,,internal,,, +searchCategory-proteomics-percentile,http://edamontology.org/topic_0121,Proteomics,,,proteomics-percentile,Percentile,P,Search for genes based on the rank of expression w/in an experiment.,,,internal,,, +searchCategory-transcriptomics-percentile,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-percentile,Percentile,P,Search for genes based on the rank of expression w/in an experiment.,,,internal,,, +searchCategory-transcriptomics-metacycle,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-metacycle,MetaCycle,MC,Search for genes based on MetaCycle methods,,,internal,,, +searchCategory-transcriptomics-iterativeWGCNA,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-iterativeWGCNA,WGCNA,W,Search for genes based on iterativeWGCNA methods,,,internal,,, +searchCategory-metabolomics-fold-change,http://edamontology.org/topic_3172,Metabolomics,,,metabolomics-fold-change,Fold Change,FC,Search for compounds which are differentially expressed between two sets of samples,,,internal,,, +,,,,,,,,,,,,,, +searchCategory-interactions,http://edamontology.org/topic_0602,interactions and pathways,,,GenesByY2hInteractions,Interactions,I,Search for genes for interactions.,,,internal,,, +,,,,,,,,,,,,,, +searchCategory-chipchip,http://edamontology.org/topic_3173,Epigenomics,,,GenesByChIPchip,chip-chip,CC,Search for genes with evidence for expression based on ChIP-chip peaks.,,,internal,,, +,,,,,,,,,,,,,, +searchCategory-metabolomics-percentile,http://edamontology.org/topic_3172,Metabolomics,,,metabolomics-percentile,Percentile,P,Search for compounds which are differentially expressed between two sets of samples,,,internal,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +searchCategory-proteomics-fold-change,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-change,Fold Change,FC,Search for genes which are differentially expressed between two sets of samples.,,,internal,,, +searchCategory-transcriptomics-fold-change,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-change,Fold Change,FC,Search for genes which are differentially expressed between two sets of samples. A set can have only one sample. This is an arithmetic calculation and no statistical significance is provided.,,,internal,,, +,,,,,,,,,,,,,, +searchCategory-transcriptomics-sense-antisense,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-sense-antisense,SenseAntisense,SA,Search for genes that exhibit patterns of sense and antisense transcript expression between two sets of samples. This search is available for RNA seq datasets where read directionality (strandedness) was determined.,,,internal,,, +searchCategory-proteomics-fold-difference,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-difference,Fold Difference,FD,Search for genes which are different between two sets of samples.,,,internal,,, +searchCategory-transcriptomics-fold-difference,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-difference,Fold Difference,FD,Search for genes which are different between two sets of samples.,,,internal,,, +searchCategory-fold-change-with-pvalue,http://edamontology.org/topic_3308,Transcriptomics,,,fold-change-with-pvalue,Fold Change with pValue,FCpV,Search for genes which are differentially expressed between 2 samples. Fishers Exact Test p values for each gene/sample comparison were precomputed.,,,internal,,, +searchCategory-proteomics-fold-change-with-confidence,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-change-with-confidence,Fold Change with Confidence,FCC,Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates.,,,internal,,, +searchCategory-transcriptomics-fold-change-with-confidence,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-change-with-confidence,Fold Change with Confidence,FCC,Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates.,,,internal,,, +searchCategory-proteomics-fold-change-with-fdr,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-change-with-fdr,Fold Change with FDR,FCF,Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates.,,,internal,,, +searchCategory-transcriptomics-differential-expression,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-differential_expression,Differential Expression,DE,Search for genes that are differentially expressed between 2 samples with at least 2 biological replicates each. Adjusted p-values for each gene/sample were pre-computed using DESeq.,,,internal,,, +searchCategory-transcriptomics-fold-change-with-fdr,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-change-with-fdr,Fold Change with FDR,FCF,Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates.,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesInGlycosomeProteome,searchCategory-proteomics-quantitative-ratio,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesInGlycosomeProteome,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeText,searchCategory-phenotype-text,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotypeText,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeTextTbrucei,searchCategory-phenotype-text,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotypeTextTbrucei,,,,,,internal,,, +,,,,,,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_Segments,searchCategory-association-to-genomic-segments,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEQTL_Segments,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity,searchCategory-similarity,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByProfileSimilarity,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_HaploGrpSimilarity,searchCategory-similarity-of-association,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEQTL_HaploGrpSimilarity,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByICEMRHostResponse,searchCategory-T-test-2-sample-unequal-variance,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByICEMRHostResponse,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection,searchCategory-T-test-2-sample-unequal-variance,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByToxoProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByToxoProfileSimilarity,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByProfileSimilarity,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEqtlProfileSimilarity,searchCategory-eqtl-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEqtlProfileSimilarity,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGametocyteProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGametocyteProfileSimilarity,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCryptoRtpcrProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCryptoRtpcrProfileSimilarity,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRtPcrFoldChange,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRtPcrFoldChange,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGH,searchCategory-fold-difference,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCortesCGH,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGHCrossStrain,searchCategory-fold-difference,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCortesCGHCrossStrain,,,,,,internal,webservice,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByName,http://edamontology.org/topic_0199,Genetic Variation,RflpIsolateRecordClasses.RflpIsolateRecordClass,search,RflpIsolateQuestions.ByName,,,,,,menu,webservice,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.BySampleDetails,http://edamontology.org/topic_0199,Genetic Variation,RflpIsolateRecordClasses.RflpIsolateRecordClass,search,RflpIsolateQuestions.BySampleDetails,,,,,,menu,webservice,, +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByGenotypeNumber,http://edamontology.org/topic_0199,Genetic Variation,RflpIsolateRecordClasses.RflpIsolateRecordClass,search,RflpIsolateQuestions.ByGenotypeNumber,,,,,,menu,,, +## TEMPLATE_ANCHOR internalGeneSearchCategory,,,,,,,,,,,,,, +## TEMPLATE_ANCHOR internalSpanSearchCategory,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +## ToxoDB Chip,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +rtpcr_graph,DatasetRecordClasses.DatasetRecordClass.DS_2bf995383e,,TranscriptRecordClasses.TranscriptRecordClass,attribute,rtpcr_graph,,,,gene,,results,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,TranscriptRecordClasses.TranscriptRecordClass,attribute,tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph,,,,gene,,results,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,download, +prob_MAP,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,prob_MAP,,,,gene,,results,,, +,,,,,,,,,,,,download,, +prob_MCMC,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,prob_MCMC,,,,gene,,results ,,, +,,,,,,,,,,,,,download, +MAP_location,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,MAP_location,,,,gene,,results,,, +,,,,,,,,,,,,,download, +MCMC_location,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,MCMC_location,,,,gene,,results,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from the CDS Sequence,,,,1,internal,,download, +TranscriptRecordClasses.TranscriptRecordClass.no_tet_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,no_tet_cds,,,,transcript,1,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.bfd3_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd3_cds,,,,transcript,2,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.bfd6_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd6_cds,,,,transcript,3,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.pf_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,pf_cds,,,,transcript,4,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.dif_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,dif_cds,,,,transcript,5,results,,, +,,,,,,,,,,,,,, +foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from the CDS Sequence - Fold-Change,,,,2,internal,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd3_cds,,,,transcript,1,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd6_cds,,,,transcript,2,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_pf_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_pf_cds,,,,transcript,3,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_dif_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_dif_cds,,,,transcript,4,results,,, +,,,,,,,,,,,,,, +quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from gene model (5 prime UTR + CDS),,,,3,internal,,download, +TranscriptRecordClasses.TranscriptRecordClass.no_tet_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,no_tet_model,,,,transcript,1,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.bfd3_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd3_model,,,,transcript,2,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.bfd6_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd6_model,,,,transcript,3,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.pf_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,pf_model,,,,transcript,4,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.dif_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,dif_model,,,,transcript,5,results,,, +,,,,,,,,,,,,,, +foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from gene model (5 prime UTR + CDS) - Fold-Change,,,,4,internal,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd3_model,,,,transcript,1,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd6_model,,,,transcript,2,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_pf_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_pf_model,,,,transcript,3,results,,download, +TranscriptRecordClasses.TranscriptRecordClass.fc_dif_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_dif_model,,,,transcript,4,results,,, +,,,,,,,,,,,,,, +mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph,DatasetRecordClasses.DatasetRecordClass.DS_4585d065bf,,TranscriptRecordClasses.TranscriptRecordClass,attribute,mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph,,,,gene,,results,,, +,,,,,,,,,,,,,, +pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph,DatasetRecordClasses.DatasetRecordClass.DS_c35d971a20,,TranscriptRecordClasses.TranscriptRecordClass,attribute,pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph,,,,gene,,results,,, +,,,,,,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC,,,,,,internal,,, +,,,,,,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile,searchCategory-transcriptomics-percentile,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile,,,,,,internal,,, +,,,,,,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense,searchCategory-transcriptomics-sense-antisense,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense,,,,,,internal,,, +,,,,,,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile,searchCategory-transcriptomics-percentile,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.genesByRNASeqUserDataset,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.genesByRNASeqUserDataset,,,,,,internal,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacyclmics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,,,,,,internal,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,webservice,, +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacyclmics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,,,,,,internal,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,webservice,, +OrganismRecordClasses.OrganismRecordClass.OrganismQuestions.GenomeDataTypes,http://edamontology.org/topic_0637,organism,OrganismRecordClasses.OrganismRecordClass,search,OrganismQuestions.GenomeDataTypes,,,,,,menu,,, +,,,,,,,,,,,,,, +FileRecordClasses.FileRecordClass.data_type,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,data_type,,,,,1,results,,, +FileRecordClasses.FileRecordClass.file_format,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,file_format,,,,,2,results,,, +FileRecordClasses.FileRecordClass.filesize_text,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,filesize_text,,,,,3,results,record-internal,, +FileRecordClasses.FileRecordClass.filesize,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,filesize,,,,,3,,record-internal,download, +FileRecordClasses.FileRecordClass.organism,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,organism,,,,,4,results,,, +FileRecordClasses.FileRecordClass.build_num,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,build_num,,,,,5,results,,, +FileRecordClasses.FileRecordClass.filename,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,filename,,,,,6,results,,, +FileRecordClasses.FileRecordClass.category,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,category,,,,,1,results,,, +FileRecordClasses.FileRecordClass.file_type,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,file_type,,,,,1,results,,, +,,,,,,,,,,,,,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenomicSpanByLongReadEvidence,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.GenomicSpanByLongReadEvidence,,,,,,menu,webservice,, +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.IntronJunctionDynamicSearch,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.IntronJunctionDynamicSearch,,,,,,menu,,, +,,,,,,,,,,,,,, +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByLongReadEvidence,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByLongReadEvidence,,,,,,menu,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +JbrowseRecordClasses.JbrowseGeneRecordClass.link,http://edamontology.org/topic_3345,Data identity and mapping,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,link,,,,gene,,,record,, +JbrowseRecordClasses.JbrowseGeneRecordClass.product,http://edamontology.org/topic_0219,Curation and Annotation,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,product,,,,gene,,record,,, +JbrowseRecordClasses.JbrowseGeneRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,organism,,,,gene,,record,,, +JbrowseRecordClasses.JbrowseGeneRecordClass.name,http://edamontology.org/topic_0219,Curation and Annotation,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,name,,,,gene,,record,,, +JbrowseRecordClasses.JbrowseGeneRecordClass.orthomcl_link,http://edamontology.org/topic_3299,Evolutionary Biology,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,orthomcl_link,,,,gene,,record,,, +JbrowseRecordClasses.JbrowseGeneRecordClass.so_term_name,http://edamontology.org/topic_1775,GenomicSequenceLocationCategory,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,so_term_name,,,,gene,,record,,, +JbrowseRecordClasses.JbrowseGeneRecordClass.location_text,GenomicSequenceLocationCategory,Function analysis,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,location_text,,,,gene,,record,,, +,,,,,,,,,,,,,, +,,,,,,,,,,,,,, +JbrowseRecordClasses.JbrowseGeneRecordClass.GOTerms,http://edamontology.org/topic_1775,Function analysis,JbrowseRecordClasses.JbrowseGeneRecordClass,table,GOTerms,,,,transcript,,record,,, +JbrowseRecordClasses.Jbrowse.GeneRecordClass.GeneTranscripts,http://edamontology.org/topic_0114,Gene Structure,JbrowseRecordClasses.JbrowseGeneRecordClass,table,GeneTranscripts,,,,gene,,record,,, From 49c65070f4bf7ec58f84d493fb61ec3f961718b1 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Wed, 29 Apr 2026 06:31:44 -0400 Subject: [PATCH 58/64] Revert "Add new search to ontology" This reverts commit 0856533d1fe2abd9dfc0e53b6df0aa2b4c6ea1aa. --- Model/lib/wdk/ontology/individuals.txt | 2192 ++++++++++++------------ 1 file changed, 1096 insertions(+), 1096 deletions(-) diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index be69e33df..8d3a2aa60 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -1,1096 +1,1096 @@ - ,,,recordClassName,targetType,name,displayName,shortDisplayName,description,geneOrTranscript,displayOrder,scope,scope,scope, -,,,eupath/eupath.owl#recordClassName,eupath/eupath.owl#targetType,eupath/eupath.owl#name,EUPATH_0000052,eupath/eupath.owl#shortDisplayName,eupath/eupath.owl#description,eupath/eupath.owl#geneOrTranscript,EUPATH_0000274,eupath/eupath.owl#scope,eupath/eupath.owl#scope,eupath/eupath.owl#scope, -GenomicSequencePropertiesCategory,,,,,GenomicSequencePropertiesCategory,Genomic Sequence Properties,,,,5,,,, -GenomicSequenceLocationCategory,,,,,GenomicSequenceLocationCategory,Genomic Location,,,,6,,,, -TextCategory,,,,,TextCategory,Text,,,,1,,,, -AlignmentsCategory,http://edamontology.org/topic_0080,Sequence Analysis,,,AlignmentsCategory,BLAT and Blast Alignments,,,,,,,, -CodingPotentialCategory,http://edamontology.org/topic_0080,Sequence Analysis,,,CodingPotentialCategory,Coding Potential,,,,,,,, -InterProDomainsCategory,http://edamontology.org/topic_0123,Protein properties,,,InterProDomainsCategory,InterPro Domains,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByCompoundID,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByCompoundID,,,,,,menu,webservice,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByEcReaction,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByEcReaction,,,,,,menu,webservice,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChange,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChange,,,,,,menu,webservice,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByGeneID,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByGeneID,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularFormula,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByMolecularFormula,,,,,,menu,webservice,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularWeight,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByMolecularWeight,,,,,,menu,webservice,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathway,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPathway,,,,,,menu,webservice,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathwayID,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPathwayID,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByText,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByText,,,,,,menu,webservice,, -EstRecordClasses.EstRecordClass.EstQuestions.EstBySourceId,http://edamontology.org/topic_0219,annot and curation,EstRecordClasses.EstRecordClass,search,EstQuestions.EstBySourceId,,,,,,menu,webservice,, -EstRecordClasses.EstRecordClass.EstQuestions.ESTsByGeneIDs,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.ESTsByGeneIDs,,,,,,menu,webservice,, -EstRecordClasses.EstRecordClass.EstQuestions.EstsByLibrary,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByLibrary,,,,,,menu,webservice,, -EstRecordClasses.EstRecordClass.EstQuestions.EstsByLocation,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByLocation,,,,,,menu,webservice,, -EstRecordClasses.EstRecordClass.EstQuestions.EstsBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsBySimilarity,,,,,,,webservice,, -EstRecordClasses.EstRecordClass.EstQuestions.EstsByMultiBlast,http://edamontology.org/topic_0080,Sequence Analysis,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByMultiBlast,,,,,,menu,webservice,, -EstRecordClasses.EstRecordClass.EstQuestions.EstsByWeightFilter,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsByWeightFilter,,,,,,,,, -EstRecordClasses.EstRecordClass.EstQuestions.EstsWithGeneOverlap,http://edamontology.org/topic_3308,Transcriptomics,EstRecordClasses.EstRecordClass,search,EstQuestions.EstsWithGeneOverlap,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.,,,,,,,,, -GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,,,,,,internal,webservice,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC,searchCategory-transcriptomics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC,searchCategory-transcriptomics-iterativeWGCNA,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,searchCategory-metabolomics-fold-change,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,searchCategory-metabolomics-percentile,,CompoundRecordClasses.CompoundRecordClass,search,CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCoexpression,searchCategory-coexpression,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCoexpression,,,,,,internal,webservice,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCandidaCoexpression,searchCategory-coexpression,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCandidaCoexpression,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNeurosporaCoexpression,searchCategory-coexpression,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByNeurosporaCoexpression,,,,,,internal,webservice,, - ,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile,searchCategory-transcriptomics-percentile,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByLocusTag,http://edamontology.org/topic_0219,annot and curation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GeneByLocusTag,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneBySingleLocusTag,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GeneBySingleLocusTag,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByTranscriptID,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GeneByTranscriptID,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByBindingSiteFeature,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByBindingSiteFeature,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCentromereProximity,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCentromereProximity,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEcNumber,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEcNumber,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByFunctionalGeneList,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByFunctionalGeneList,,,,,,menu,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesBySubcellularLocalization,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesBySubcellularLocalization,,,,,,menu,,, -##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC,,,,,,menu,webservice,, -##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC,http://edamontology.org/topic_1775,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExonCount,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByExonCount,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByParalogCount,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByParalogCount,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExportPrediction,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByExportPrediction,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneType,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGeneType,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIntronJunctions,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByIntronJunctions,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneModelChars,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGeneModelChars,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGoTerm,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGoTerm,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySecondaryMetabolites,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySecondaryMetabolites,,,,,,menu,webservice,, -## TEMPLATE_ANCHOR geneImageGoTermOntology,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype,searchCategory-phenotype-curated,phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByHighThroughputPhenotyping,searchCategory-phenotype-quantitative,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByHighThroughputPhenotyping,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByInterproDomain,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByInterproDomain,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIsoelectricPoint,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByIsoelectricPoint,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByLocation,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMassSpec,http://edamontology.org/topic_0121,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMassSpec,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPTM,http://edamontology.org/topic_0121,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPTM,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathwayHagai,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMetabolicPathwayHagai,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathway,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMetabolicPathway,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByReactionCompounds,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByReactionCompounds,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMolecularWeight,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMolecularWeight,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMotifSearch,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMotifSearch,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNgsSnps,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByNgsSnps,,,,,,menu,webservice,, -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumber,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCopyNumber,,,,,,menu,webservice,, -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumberComparison,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCopyNumberComparison,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNonnuclearLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByNonnuclearLocation,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOldAnnotation,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByOldAnnotation,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOrthologPattern,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByOrthologPattern,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhyleticProfile,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhyleticProfile,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPdbSimilarity,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPdbSimilarity,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithAlphafold,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithAlphafold,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySingleCell,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySingleCell,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFungiProteinProteinInteraction,searchCategory-interactions,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByFungiProteinProteinInteraction,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPlasmoProteinProteinInteraction,searchCategory-interactions,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPlasmoProteinProteinInteraction,,,,,,internal,webservice,, -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC,,,,,,menu,webservice,, -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRodentMalariaPhenotype,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRodentMalariaPhenotype,,,,,,,,, -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySecondaryStructure,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySecondaryStructure,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySimilarity,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMultiBlast,http://edamontology.org/topic_0080,Sequence Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByMultiBlast,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySnps,http://edamontology.org/topic_0199,Genetic Variation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySnps,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularLocalization,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesBySubcellularLocalization,,,,,,menu,webservice,, -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalInteraction,,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByFunctionalInteraction,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTaxon,http://edamontology.org/topic_0637,Taxonomy,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByTaxon,,,,,,menu,webservice,, -GeneRecordClasses.GeneRecordClass.GeneQuestions.GenesByTaxonGene,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,search,GeneQuestions.GenesByTaxonGene,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTelomereProximity,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByTelomereProximity,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByText,TextCategory,TextCategory,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByText,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTransmembraneDomains,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByTransmembraneDomains,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesOrthologousToAGivenGene,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesOrthologousToAGivenGene,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithEpitopes,http://edamontology.org/topic_0804,immunoproteins,genes,antigens,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithEpitopes,,,,,,menu,webservice -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithSignalPeptide,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithSignalPeptide,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithStructurePrediction,http://edamontology.org/topic_0081,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithStructurePrediction,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUpdatedAnnotation,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithUpdatedAnnotation,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUserComments,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithUserComments,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithApolloAnnotation,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesWithApolloAnnotation,,,,,,internal,webservice,, -##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.InternalGenesByEcNumber,,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.InternalGenesByEcNumber,,,,,,,,, -TranscriptAttributes.MetaRandomIntAttr,RandomIntAttr,,TranscriptRecordClasses.TranscriptRecordClass,attributeMetaQuery,MetaRandomIntAttr,,Random Integer,gene,,results,download,,, -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceBySourceId,http://edamontology.org/topic_0219,annot and curation,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequenceBySourceId,,,,,,menu,webservice,, -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceByWeightFilter,,,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequenceByWeightFilter,,,,,,,,, -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesBySimilarity,,,,,,,webservice,, -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByMultiBlast,http://edamontology.org/topic_0080,Sequence Analysis,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesByMultiBlast,,,,,,menu,webservice,, -SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByTaxon,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesByTaxon,,,,,,menu,webservice,, -##SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByPloidy,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,search,GenomicSequenceQuestions.SequencesByPloidy,,,,,,menu,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByProteinArray,http://edamontology.org/topic_0804,Immunology,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByProteinArray,,,,,,menu,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByMicroarrayEvidence,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByMicroarrayEvidence,,,,,,menu,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByQuantitativeProteomics,http://edamontology.org/topic_0121,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByQuantitativeProteomics,,,,,,menu,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByPhenotypeEvidence,http://edamontology.org/topic_3298,Phenotype,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByPhenotypeEvidence,,,,,,menu,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRNASeqEvidence,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByRNASeqEvidence,,,,,,menu,,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByY2hInteractions,http://edamontology.org/topic_0602,interactions and pathways,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByY2hInteractions,,,,,,menu,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,search,InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence,,,,,,menu,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRTPCREvidence,http://edamontology.org/topic_3308,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByRTPCREvidence,,,,,,menu,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByChIPchip,http://edamontology.org/topic_3173,Epigenomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByChIPchip,,,,,,menu,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByCompoundsTransform,,Metabolomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByCompoundsTransform,,,,,,,,, -##TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMassSpecEvidence,,Proteomics,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByMassSpecEvidence,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMissingTranscriptsTransform,,,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByMissingTranscriptsTransform,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByOrthologs,,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByOrthologs,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByPathwaysTransform,,,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByPathwaysTransform,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByProteinStructure,,Structure Analysis,TranscriptRecordClasses.TranscriptRecordClass,search,InternalQuestions.GenesByProteinStructure,,,,,,,,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByCountry,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByCountry,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByHost,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByHost,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByPopsetId,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByPopsetId,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByIsolationSource,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByIsolationSource,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByProduct,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByProduct,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByStudy,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByStudy,,,,,,,,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByTaxon,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetByTaxon,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsBySimilarity,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetsBySimilarity,,,,,,,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByMultiBlast,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetsByMultiBlast,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetIsolatesByText,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetIsolatesByText,,,,,,menu,webservice,, -PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByWeightFilter,http://edamontology.org/topic_0199,Genetic Variation,PopsetRecordClasses.PopsetRecordClass,search,PopsetQuestions.PopsetsByWeightFilter,,,,,,,,, -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfByOrfId,http://edamontology.org/topic_0219,annot and curation,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfByOrfId,,,,,,menu,webservice,, -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsByLocation,,,,,,menu,webservice,, -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByMotifSearch,http://edamontology.org/topic_0080,Sequence Analysis,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsByMotifSearch,,,,,,menu,webservice,, -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsBySimilarity,http://edamontology.org/topic_0080,Sequence Analysis,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsBySimilarity,,,,,,menu,webservice,, -OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByWeightFilter,http://edamontology.org/topic_0219,annot and curation,OrfRecordClasses.OrfRecordClass,search,OrfQuestions.OrfsByWeightFilter,,,,,,,,, -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompoundIds,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByCompoundIds,,,,,,,,, -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompounds,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByCompounds,,,,,,menu,webservice,, -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneIds,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByGeneIds,,,,,,,,, -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneList,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByGeneList,,,,,,menu,webservice,, -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByIdentifierList,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByIdentifierList,,,,,,menu,webservice,, -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByPathwayID,http://edamontology.org/topic_0602,interactions and pathways,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByPathwayID,,,,,,menu,webservice,, -PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByWeightFilter,,,PathwayRecordClasses.PathwayRecordClass,search,PathwayQuestions.PathwaysByWeightFilter,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpBySourceId,http://edamontology.org/topic_0219,annot and curation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpBySourceId,,,,,1,menu,webservice,, -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByGeneId,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByGeneId,,,,,5,menu,webservice,, -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByIsolatePattern,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByIsolatePattern,,,,,4,menu,webservice,, -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByLocation,,,,,2,menu,webservice,, -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByStrain,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByStrain,,,,,3,menu,webservice,, -SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByWeightFilter,http://edamontology.org/topic_0199,Genetic variation,SnpChipRecordClasses.SnpChipRecordClass,search,SnpChipQuestions.SnpsByWeightFilter,,,,,,,,, -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpBySourceId,http://edamontology.org/topic_0219,annot and curation,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpBySourceId,,,,,1,menu,webservice,, -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByGeneIds,http://edamontology.org/topic_0199,,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByGeneIds,,,,,5,menu,webservice,, -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByIsolateGroup,http://edamontology.org/topic_0199,,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByIsolateGroup,,,,,3,menu,webservice,, -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByLocation,,,,,2,menu,webservice,, -SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByTwoIsolateGroups,http://edamontology.org/topic_0199,Genetic variation,SnpRecordClasses.SnpRecordClass,search,SnpQuestions.NgsSnpsByTwoIsolateGroups,,,,,4,menu,webservice,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByEQTLtoGenes,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansByEQTLtoGenes,,,,,,menu,webservice,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByMotifSearch,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansByMotifSearch,,,,,,menu,webservice,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySourceId,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansBySourceId,,,,,,menu,webservice,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansBySpanLogic,,,,,,,,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByWeightFilter,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.DynSpansByWeightFilter,,,,,,,,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenesBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.GenesBySpanLogic,,,,,,,,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.OrfsBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.OrfsBySpanLogic,,,,,,,,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.SnpsBySpanLogic,,,,,,,,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsChipsBySpanLogic,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.SnpsChipsBySpanLogic,,,,,,,,, -SampleRecordClasses.SampleRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SampleRecordClasses.SampleRecordClass,attribute,record_overview,,,,,,record-internal,,, -SampleRecordClasses.SampleRecordClass.Characteristics,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,Characteristics,,,,,3,record,download,, -SampleRecordClasses.SampleRecordClass.Protocols,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,Protocols,,,,,2,record,download,, -SampleRecordClasses.SampleRecordClass.ProcessedSample,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,ProcessedSample,,,,,4,record,download,, -SampleRecordClasses.SampleRecordClass.Datasets,http://edamontology.org/topic_0219,annotation and curation,SampleRecordClasses.SampleRecordClass,table,Datasets,,,,,1,record,download,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.Datasets,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,Datasets,,,,,1,record,download,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,record_overview,,,,,,record-internal,,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.Characteristics,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,Characteristics,,,,,2,record,download,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.Protocols,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,Protocols,,,,,2,record,download,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.ProcessedSample,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,ProcessedSample,,,,,3,record,download,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpGenotype,http://edamontology.org/topic_0219,annotation and curation,RflpIsolateRecordClasses.RflpIsolateRecordClass,table,RflpGenotype,,,,,3,record,download,, -GeneRecordClasses.GeneRecordClass.Sequences,http://edamontology.org/data_2044,sequences,GeneRecordClasses.GeneRecordClass,table,Sequences,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.GeneTranscripts,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,table,GeneTranscripts,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.CellularLocalization,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,CellularLocalization,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.ECNumbers,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,ECNumbers,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.SubcellularLocationGeneLists,http://edamontology.org/topic_0140,Subcellular Localization,GeneRecordClasses.GeneRecordClass,table,SubcellularLocationGeneLists,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.FunctionPredictionGeneLists,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,FunctionPredictionGeneLists,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.ECNumbersInferred,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,ECNumbersInferred,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.ProteinSequence,http://edamontology.org/data_2976,Protin Sequence,GeneRecordClasses.GeneRecordClass,table,ProteinSequence,,,,transcript,,download,record,, -,,,,,,,,,,,,,, -GeneRecordClasses.GeneRecordClass.Seqedits,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,table,Seqedits,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.Antibody,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,Antibody,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.CommunityExpComments,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,CommunityExpComments,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationDatasets,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,EdaCellularLocalizationDatasets,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationGraphsDataTable,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,EdaCellularLocalizationGraphsDataTable,,,,gene,,record-internal,download,, -GeneRecordClasses.GeneRecordClass.Products,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,Products,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.SNPsAlignment,http://edamontology.org/topic_0199,Genetic Variation,GeneRecordClasses.GeneRecordClass,table,SNPsAlignment,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.MercatorTable,http://edamontology.org/topic_3299,EvoBiol Comparison,GeneRecordClasses.GeneRecordClass,table,MercatorTable,,,,gene,,record, ,, -,,,,,,,,,,,,,, -GeneRecordClasses.GeneRecordClass.Apollo_link,http://edamontology.org/topic_0080,Sequence Analysis ,GeneRecordClasses.GeneRecordClass,table,Apollo_link,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.Apollo_link,http://edamontology.org/topic_0080,Gene Models,GeneRecordClasses.GeneRecordClass,table,Apollo_link,,,,gene,,record,,, -,,,,,,,,,,,,,, -GeneRecordClasses.GeneRecordClass.PhenotypeScore,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeScore,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.PhenotypeGraphsDataTable,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeGraphsDataTable,,,,gene,,record-internal,download,, -GeneRecordClasses.GeneRecordClass.specialJbrowseUrl,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,attribute,specialJbrowseUrl,,,,,1,gene,record-internal,, -GeneRecordClasses.GeneRecordClass.ExpressionGraphsDataTable,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,ExpressionGraphsDataTable,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphsDataTable,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,UserDatasetsTranscriptomicsGraphsDataTable,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.FacetMetadata,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,FacetMetadata,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,FungiVBOrgLinkoutsTable,,,,gene,,record-internal,,, -,,,,,,,,,,,,,, -GeneRecordClasses.GeneRecordClass.ContXAxisMetadata,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,ContXAxisMetadata,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.ai_expression,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,ai_expression,,,,gene,2,record,,, -GeneRecordClasses.GeneRecordClass.TranscriptionSummary,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,TranscriptionSummary,,,,gene,2,record,,, -GeneRecordClasses.GeneRecordClass.ExpressionGraphs,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,ExpressionGraphs,,,,gene,3,record,,, -GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphs,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,UserDatasetsTranscriptomicsGraphs,,,,gene,4,record,,, -GeneRecordClasses.GeneRecordClass.SpliceSites,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,SpliceSites,,,,gene,2,record,download,, -GeneRecordClasses.GeneRecordClass.PolyASites,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,PolyASites,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC,,,,gene,3,,download,, -GeneRecordClasses.GeneRecordClass.pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC,,,,gene,3,,download,, -GeneRecordClasses.GeneRecordClass.pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC,,,,gene,3,,download,, -GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.CGD_CuratedPhenotypes,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,CGD_CuratedPhenotypes,,,,gene,3,record,download,, -GeneRecordClasses.GeneRecordClass.ProteinExpressionGraphs,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,ProteinExpressionGraphs,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.HostResponseGraphs,http://edamontology.org/topic_0804,Immunology,GeneRecordClasses.GeneRecordClass,table,HostResponseGraphs,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.EdaPhenotypeDatasets,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,EdaPhenotypeDatasets,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphs,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeScoreGraphs,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.eQTLPhenotypeGraphs,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,eQTLPhenotypeGraphs,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.PhenotypeGraphs,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeGraphs,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphsDataTable,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeScoreGraphsDataTable,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.EdaPhenotypeGraphsDataTable,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,EdaPhenotypeGraphsDataTable,,,,gene,,record-internal,download,, -GeneRecordClasses.GeneRecordClass.HostResponseGraphsDataTable,http://edamontology.org/topic_0804,Immunology,GeneRecordClasses.GeneRecordClass,table,HostResponseGraphsDataTable,,,,gene,,record-internal,download,, -GeneRecordClasses.GeneRecordClass.RodMalPhenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,RodMalPhenotype,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,Plasmo_eQTL_Table,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.Phenotype,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,Phenotype,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.PhenotypeMagnaporthe,http://edamontology.org/topic_3298,phenotype,GeneRecordClasses.GeneRecordClass,table,PhenotypeMagnaporthe,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.InterPro,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,InterPro,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.WolfPsortForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,WolfPsortForm,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.BlastpForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,BlastpForm,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.InterProForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,InterProForm,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.MendelGPIForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,MendelGPIForm,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.FungalGPIForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,FungalGPIForm,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.StringDBForm,http://edamontology.org/topic_0123,prot prop,GeneRecordClasses.GeneRecordClass,table,StringDBForm,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.hasAlphaFold,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,attribute,hasAlphaFold,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.alphafold_url,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,attribute,alphafold_url,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.AlphaFoldLinkouts,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,AlphaFoldLinkouts,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.TMHMM,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,TMHMM,,,,transcript,,,download,, -GeneRecordClasses.GeneRecordClass.LowComplexity,http://edamontology.org/topic_0160,Sequence sites, features and motifs,GeneRecordClasses.GeneRecordClass,table,LowComplexity,,,,transcript,,,download, -GeneRecordClasses.GeneRecordClass.GeneModelDump,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,table,GeneModelDump,,,,transcript,,,download,, -GeneRecordClasses.GeneRecordClass.SignalP,http://edamontology.org/topic_0140,Protein targeting and localization,GeneRecordClasses.GeneRecordClass,table,SignalP,,,,transcript,,,download,, -GeneRecordClasses.GeneRecordClass.GeneLocation,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,table,GeneLocation,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table,http://edamontology.org/topic_3298,Phenomics,GeneRecordClasses.GeneRecordClass,table,Plasmo_eQTL_Table,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.UserComments,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,UserComments,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.Notes,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,Notes,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.external_db_name,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,external_db_name,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.external_db_version,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,external_db_version,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,record_overview,,,,gene,,,,, -GeneRecordClasses.GeneRecordClass.EcNumber,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,EcNumber,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.MassSpec,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,MassSpec,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.MassSpecDownload,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,MassSpecDownload,,,,transcript,,download,,, -GeneRecordClasses.GeneRecordClass.MassSpecMod,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,MassSpecMod,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.GOSlim,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,GOSlim,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.GOTerms,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,GOTerms,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.Y2hInteractions,http://edamontology.org/topic_0128,Protein Interactions,GeneRecordClasses.GeneRecordClass,table,Y2hInteractions,,,,gene,,record,download,, -GeneRecordClasses.GeneRecordClass.Orthologs,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,table,Orthologs,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.OrthologsLite,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,table,OrthologsLite,,,,gene,,,,, -GeneRecordClasses.GeneRecordClass.MetabolicPathwaysMPMP,http://edamontology.org/topic_0753,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,MetabolicPathwaysMPMP,,,,transcript,1,record,download,, -GeneRecordClasses.GeneRecordClass.MetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,MetabolicPathways,,,,transcript,2,record,download,, -GeneRecordClasses.GeneRecordClass.Alias,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,Alias,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.strain,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,strain,,,,gene,,record-internal,download,, -GeneRecordClasses.GeneRecordClass.PubMed,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,table,PubMed,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.Cellxgene,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,table,Cellxgene,,,,transcript,,record,,, -GeneRecordClasses.GeneRecordClass.GeneLinkouts,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneLinkouts,,,,transcript,,record,download,, -GeneRecordClasses.GeneRecordClass.3dPreds,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,3dPreds,,,,transcript,2,record,download,, -GeneRecordClasses.GeneRecordClass.PdbSimilarities,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,PdbSimilarities,,,,transcript,1,record,download,, -GeneRecordClasses.GeneRecordClass.Ssgcid,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,table,Ssgcid,,,,transcript,3,record,,, -GeneRecordClasses.GeneRecordClass.Epitopes,http://edamontology.org/topic_0804,immunoproteins,genes,antigens,GeneRecordClasses.GeneRecordClass,table,Epitopes,,,,transcript,,record,download -GeneRecordClasses.GeneRecordClass.Product,http://edamontology.org/topic_0123,Protein properties,GeneRecordClasses.GeneRecordClass,table,Product,,,,transcript,,,,, -GeneRecordClasses.GeneRecordClass.GeneName,http://edamontology.org/data_2299,Gene name,GeneRecordClasses.GeneRecordClass,table,GeneName,,,,transcript,,,,, -GeneRecordClasses.GeneRecordClass.ProteinExpressionPBrowse,http://edamontology.org/topic_0121,Proteomics,GeneRecordClasses.GeneRecordClass,table,ProteinExpressionPBrowse,,,,transcript,,,record,, -GeneRecordClasses.GeneRecordClass.ProteinProperties,http://edamontology.org/topic_0123,Protein properties,GeneRecordClasses.GeneRecordClass,table,ProteinProperties,,,,transcript,,download,record,download, -GeneRecordClasses.GeneRecordClass.AllProducts,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,AllProducts,,,,transcript,2,results,record,download, -GeneRecordClasses.GeneRecordClass.ApolloProducts,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,table,ApolloProducts,,,,transcript,3,results,record,, -GeneRecordClasses.GeneRecordClass.GeneId,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneId,,,,gene,,,Record-internal,, -GeneRecordClasses.GeneRecordClass.GeneGffAliases,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneGffAliases,,,,gene,,,,, -GeneRecordClasses.GeneRecordClass.GeneGffGoTerms,http://edamontology.org/topic_1775,Function analysis,GeneRecordClasses.GeneRecordClass,table,GeneGffGoTerms,,,,gene,,,,, -GeneRecordClasses.GeneRecordClass.GeneGffDbxrefs,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,table,GeneGffDbxrefs,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.GenBankLocations,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,table,GenBankLocations,,,,transcript,,download,record,, -GeneRecordClasses.GeneRecordClass.CompoundsMetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,CompoundsMetabolicPathways,,,,transcript,3,record,download,, -GeneRecordClasses.GeneRecordClass.MobileElements,http://edamontology.org/topic_0798,Metabolic Pathways,GeneRecordClasses.GeneRecordClass,table,MobileElements,,,,transcript,3,record,download,, -GeneRecordClasses.GeneRecordClass.MetaTable,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,table,MetaTable,,,,gene,,record-internal,,, -TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMis,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfal3D7PiggyBacMutMis,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMfs,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfal3D7PiggyBacMutMfs,,,,gene,,results,download,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutHMS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoHPiggyBacMutHMS,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutOIS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoHPiggyBacMutOIS,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMIS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMIS,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMISplus,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMISplus,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMFS,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMFS,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMutability,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,pknoA1H1PiggyBacMutMutability,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncPE,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncPE,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLiver,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncLiver,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLung,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncLung,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncSpleen,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprFuncSpleen,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprMeanPhenotype,http://edamontology.org/topic_3298,Phenomics,TranscriptRecordClasses.TranscriptRecordClass,attribute,tgonGt1CrisprMeanPhenotype,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.Publications,http://edamontology.org/topic_3068,Literature and Reference,TranscriptRecordClasses.TranscriptRecordClass,attribute,Publications,,,,transcript,,,,, -TranscriptRecordClasses.TranscriptRecordClass.dic_img_uri,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,dic_img_uri,,,,gene,,record-internal,,, -TranscriptRecordClasses.TranscriptRecordClass.gfp_img_uri,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,gfp_img_uri,,,,gene,,record-internal,,, -TranscriptRecordClasses.TranscriptRecordClass.is_visible,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,is_visible,,,,gene,,record-internal,,, -TranscriptRecordClasses.TranscriptRecordClass.has_image,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,has_image,,,,gene,,record-internal,,, -TranscriptRecordClasses.TranscriptRecordClass.dbp_image_note,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,dbp_image_note,,,,gene,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.dbp_image,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,dbp_image,,,,gene,,results,,, -TranscriptRecordClasses.TranscriptRecordClass.overview,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,overview,,,,gene,,,,, -TranscriptRecordClasses.TranscriptRecordClass.snpoverview,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,snpoverview,,,,gene,,,,, -TranscriptRecordClasses.TranscriptRecordClass.gbrowseLink,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gbrowseLink,,,,gene,,,,, -GeneRecordClasses.GeneRecordClass.jbrowseLink,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,jbrowseLink,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.pbrowseLink,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,pbrowseLink,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.geneJbrowseUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,geneJbrowseUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.geneJbrowseFullUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,geneJbrowseFullUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.geneApolloFullUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,geneApolloFullUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.apolloIdCheck,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,apolloIdCheck,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.snpsJbrowseUrl,http://edamontology.org/topic_2885,DNAPolymorhph,GeneRecordClasses.GeneRecordClass,attribute,snpsJbrowseUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.snpsJbrowseFullUrl,http://edamontology.org/topic_2885,DNAPolymorhph,GeneRecordClasses.GeneRecordClass,attribute,snpsJbrowseFullUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.blatJbrowseUrl,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,attribute,blatJbrowseUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.blatJbrowseFullUrl,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,attribute,blatJbrowseFullUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.syntenyJbrowseUrl,http://edamontology.org/topic_3299,orthologs and synteny,GeneRecordClasses.GeneRecordClass,attribute,syntenyJbrowseUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.syntenyJbrowseFullUrl,http://edamontology.org/topic_3299,orthologs and synteny,GeneRecordClasses.GeneRecordClass,attribute,syntenyJbrowseFullUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.microarray_dataset_count,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,microarray_dataset_count,,,,gene,1,,record,, -GeneRecordClasses.GeneRecordClass.rnaseq_dataset_count,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,rnaseq_dataset_count,,,,gene,1,,record,, -GeneRecordClasses.GeneRecordClass.CoverageJbrowseUrl,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,CoverageJbrowseUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.CoverageJbrowseIntUrl,http://edamontology.org/topic_3308,Transcriptomics,GeneRecordClasses.GeneRecordClass,attribute,CoverageJbrowseIntUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.GeneModelGbrowseUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,GeneModelGbrowseUrl,,,,gene,,,record,, -GeneRecordClasses.GeneRecordClass.GeneApolloGbrowseUrl,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,GeneModelApolloUrl,,,,gene,,,record,, -GeneRecordClasses.GeneRecordClass.BlatAlignmentsGbrowseUrl,http://edamontology.org/topic_0080,Sequence Analysis,GeneRecordClasses.GeneRecordClass,attribute,BlatAlignmentsGbrowseUrl,,,,gene,,,record,, -GeneRecordClasses.GeneRecordClass.SyntenyGbrowseUrl,http://edamontology.org/topic_3299,orthologs and synteny,GeneRecordClasses.GeneRecordClass,attribute,SyntenyGbrowseUrl,,,,gene,,,record,, -GeneRecordClasses.GeneRecordClass.SnpsGbrowseUrl,http://edamontology.org/topic_2885,DNAPolymorhph,GeneRecordClasses.GeneRecordClass,attribute,SnpsGbrowseUrl,,,,gene,,,record,, -GeneRecordClasses.GeneRecordClass.protein_expression_gtracks,http://www.w3.org/2002/07/owl#Thing,thing,GeneRecordClasses.GeneRecordClass,attribute,protein_expression_gtracks,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.ProteomicsPbrowseUrl,http://www.w3.org/2002/07/owl#Thing,thing,GeneRecordClasses.GeneRecordClass,attribute,ProteomicsPbrowseUrl,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.FeaturesPbrowseUrl,http://www.w3.org/2002/07/owl#Thing,thing,GeneRecordClasses.GeneRecordClass,attribute,FeaturesPbrowseUrl,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.genus_species,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,genus_species,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.genus_species,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,genus_species,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.gene_context_start,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_context_start,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.gene_context_end,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_context_end,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.context_start,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,context_start,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.context_end,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,context_end,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.start_min,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,start_min,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.end_max,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,end_max,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.gene_start_min,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_start_min,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.gene_end_max,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_end_max,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.protein_gtracks,http://edamontology.org/topic_0160,Sequence sites, features and motifs,TranscriptRecordClasses.TranscriptRecordClass,attribute,protein_gtracks,,,,transcript,,,record, -TranscriptRecordClasses.TranscriptRecordClass.JBrowse,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,JBrowse,,,,gene,,results,record,, -TranscriptRecordClasses.TranscriptRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,source_id,,,,gene,,record,,, -GeneRecordClasses.GeneRecordClass.source_id,http://edamontology.org/topic_0219,annot and cur,GeneRecordClasses.GeneRecordClass,attribute,source_id,,,,gene,,record-internal,,download, -GeneRecordClasses.GeneRecordClass.sequence_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,sequence_id,,,,gene,,results,record-internal,download, -TranscriptRecordClasses.TranscriptRecordClass.sequence_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,sequence_id,,,,gene,,results,,download, -GeneRecordClasses.GeneRecordClass.chromosome,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,chromosome,,,,gene,,results,record-internal,download, -TranscriptRecordClasses.TranscriptRecordClass.chromosome,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,chromosome,,,,gene,,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,TranscriptRecordClasses.TranscriptRecordClass,attribute,organism,,,,gene,,results,,download, -GeneRecordClasses.GeneRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,attribute,organism,,,,gene,,results,,, -GeneRecordClasses.GeneRecordClass.Taxonomy,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,table,Taxonomy,,,,gene,,,record,, -GeneRecordClasses.GeneRecordClass.ds_annotation_version,http://edamontology.org/topic_0219,annotation,GeneRecordClasses.GeneRecordClass,attribute,ds_annotation_version,,,,,1,,record,, -GeneRecordClasses.GeneRecordClass.attribution_partial,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,attribute,attribution_partial,,,,,,,record-internal,, -GeneRecordClasses.GeneRecordClass.dataset_id,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,attribute,dataset_id,,,,,,,record-internal,, -GeneRecordClasses.GeneRecordClass.attribution,http://edamontology.org/topic_3068,Literature and Reference,GeneRecordClasses.GeneRecordClass,attribute,attribution,,,,,,,record-internal,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.gene_source_id,http://edamontology.org/topic_0219,annot and cur,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_source_id,,,,gene,,record,,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_product,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_product,,,,gene,,results,record,download, -GeneRecordClasses.GeneRecordClass.product,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,product,,,,gene,,results,record-internal,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_type,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_type,,,,gene,,results,record,download, -GeneRecordClasses.GeneRecordClass.gene_type,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,gene_type,,,,gene,,,record-internal,download, -GeneRecordClasses.GeneRecordClass.type_with_pseudo,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,type_with_pseudo,,,,gene,,results,record-internal,download, -GeneRecordClasses.GeneRecordClass.gene_ebi_biotype,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,gene_ebi_biotype,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.location_text,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,location_text,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,location_text,,,,transcript,,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_location_text,,,,gene,,results,,download, -GeneRecordClasses.GeneRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,location_text,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.strand_plus_minus,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,GeneRecordClasses.GeneRecordClass,attribute,strand_plus_minus,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.genome_status,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,genome_status,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.data_release_policy,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,data_release_policy,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.num_user_comments,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,num_user_comments,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.show_apollo,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,show_apollo,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.special_link,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,special_link,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.user_comment_link_url,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,user_comment_link_url,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.apollo_ident,http://www.w3.org/2002/07/owl#Thing,GeneSummary,GeneRecordClasses.GeneRecordClass,attribute,apollo_ident,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.organism_full,http://www.w3.org/2002/07/owl#Thing,MetaTableKey,GeneRecordClasses.GeneRecordClass,attribute,organism_full,,,,gene,,,record-internal,download, -GeneRecordClasses.GeneRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,GeneRecordClasses.GeneRecordClass,attribute,organism_text,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.gene_name,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_name,,,,gene,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_exon_count,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_exon_count,,,,gene,,results,record,download, -GeneRecordClasses.GeneRecordClass.name,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,name,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.exon_count,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,exon_count,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.apolloHelp,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,apolloHelp,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.is_pseudo,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,is_pseudo,,,,transcript,,results,record,download, -GeneRecordClasses.GeneRecordClass.is_pseudo,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,is_pseudo,,,,gene,,results,record-internal,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_transcript_count,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_transcript_count,,,,gene,,results,record,download, -GeneRecordClasses.GeneRecordClass.transcript_count,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,transcript_count,,,,gene,1,results,record,, -GeneRecordClasses.GeneRecordClass.gene_gff_link,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,gene_gff_link,,,,gene,1,record,,, -GeneRecordClasses.GeneRecordClass.representative_transcript,http://edamontology.org/topic_0114,Gene Structure,GeneRecordClasses.GeneRecordClass,attribute,representative_transcript,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.representative_transcript,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,representative_transcript,,,,gene,,,record-internal,, -TranscriptRecordClasses.TranscriptRecordClass.is_deprecated,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,is_deprecated,,,,gene,,,results,download, -GeneRecordClasses.GeneRecordClass.is_deprecated,http://edamontology.org/topic_0219,Curation and Annotation,GeneRecordClasses.GeneRecordClass,attribute,is_deprecated,,,,gene,,,,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_ortholog_number,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_ortholog_number,,,,gene,,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_paralog_number,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_paralog_number,,,,gene,,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_orthomcl_name,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_orthomcl_name,,,,gene,,,,download, -TranscriptRecordClasses.TranscriptRecordClass.orthomcl_link,http://edamontology.org/topic_3299,Evolutionary Biology,TranscriptRecordClasses.TranscriptRecordClass,attribute,orthomcl_link,,,,gene,,results,,, -GeneRecordClasses.GeneRecordClass.ec_number_warning,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ec_number_warning,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.ec_num_warn,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ec_num_warn,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.ec_inferred_description,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ec_inferred_description,,,,gene,,record-internal,,, -GeneRecordClasses.GeneRecordClass.alphafold_table_help,http://edamontology.org/topic_0081,Structure Analysis,GeneRecordClasses.GeneRecordClass,attribute,alphafold_table_help,,,,gene,,record-internal,,, -TranscriptRecordClasses.TranscriptRecordClass.gene_total_hts_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_total_hts_snps,,,,gene,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsynonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_nonsynonymous_snps,,,,gene,4,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_synonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_synonymous_snps,,,,gene,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_noncoding_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_noncoding_snps,,,,gene,2,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_stop_codon_snps,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_stop_codon_snps,,,,gene,5,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsyn_syn_ratio,http://edamontology.org/topic_2885,DNA Polymorphism,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_hts_nonsyn_syn_ratio,,,,gene,3,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.uniprot_ids,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,uniprot_ids,,,,transcript,,,,download, -,,,,,,,,,,,,,, -GeneRecordClasses.GeneRecordClass.ortholog_overview,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ortholog_overview,,,,gene,,,record,download, -GeneRecordClasses.GeneRecordClass.ortholog_number,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,ortholog_number,,,,gene,,results,,download, -GeneRecordClasses.GeneRecordClass.paralog_number,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,paralog_number,,,,gene,,results,,download, -GeneRecordClasses.GeneRecordClass.orthomcl_link,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,orthomcl_link,,,,gene,,results,record,download, -GeneRecordClasses.GeneRecordClass.show_strains,http://edamontology.org/topic_3299,Evolutionary Biology,GeneRecordClasses.GeneRecordClass,attribute,show_strains,,,,gene,,,record-internal,, -GeneRecordClasses.GeneRecordClass.total_hts_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,total_hts_snps,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.hts_nonsynonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_nonsynonymous_snps,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.hts_synonymous_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_synonymous_snps,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.hts_noncoding_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_noncoding_snps,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.hts_stop_codon_snps,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_stop_codon_snps,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.hts_nonsyn_syn_ratio,http://edamontology.org/topic_2885,DNA Polymorphism,GeneRecordClasses.GeneRecordClass,attribute,hts_nonsyn_syn_ratio,,,,gene,1,results,record,download, -GeneRecordClasses.GeneRecordClass.uniprot_id,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,uniprot_id,,,,gene,,,,, -GeneRecordClasses.GeneRecordClass.uniprot_id_internal,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,uniprot_id_internal,,,,gene,,,,, -TranscriptRecordClasses.TranscriptRecordClass.uniprot_links,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,uniprot_links,,,,transcript,,results,,, -GeneRecordClasses.GeneRecordClass.uniprot_link,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,uniprot_link,,,,transcript,,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_id,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_entrez_id,,,,transcript,,,,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_link,http://edamontology.org/topic_3345,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_entrez_link,,,,transcript,,results,,, -GeneRecordClasses.GeneRecordClass.entrez_id,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,entrez_id,,,,gene,,,,, -GeneRecordClasses.GeneRecordClass.entrez_link,http://edamontology.org/topic_3345,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,entrez_link,,,,gene,,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.transcript_product,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_product,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.ApolloTranscriptProduct,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,apollo_transcript_description,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.apollo_link_out,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,apollo_link_out,,,,transcript,,results,,, -TranscriptRecordClasses.TranscriptRecordClass.transcript_length,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_length,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.exon_count,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,exon_count,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.five_prime_utr_length,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,five_prime_utr_length,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.three_prime_utr_length,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,three_prime_utr_length,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.strand,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,strand,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.protein_length,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,protein_length,,,,transcript,1,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.cds_length,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,cds_length,,,,transcript,2,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.genomic_sequence_length,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,TranscriptRecordClasses.TranscriptRecordClass,attribute,genomic_sequence_length,,,,transcript,2,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.tm_count,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,tm_count,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.molecular_weight,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,molecular_weight,,,,transcript,4,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.isoelectric_point,http://edamontology.org/topic_0123,Protein properties,TranscriptRecordClasses.TranscriptRecordClass,attribute,isoelectric_point,,,,transcript,5,results,record,download, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.cdd_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,cdd_id,,,,transcript,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.cdd_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,cdd_description,,,,transcript,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene3d_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene3d_id,,,,transcript,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.gene3d_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene3d_description,,,,transcript,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.hamap_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,hamap_id,,,,transcript,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.hamap_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,hamap_description,,,,transcript,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.ncbifam_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,ncbifam_id,,,,transcript,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.ncbifam_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,ncbifam_description,,,,transcript,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.panther_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,panther_id,,,,transcript,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.panther_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,panther_description,,,,transcript,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.pfam_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfam_id,,,,transcript,8,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.pfam_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pfam_description,,,,transcript,9,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.pirsf_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pirsf_id,,,,transcript,10,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.pirsf_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,pirsf_description,,,,transcript,11,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.prints_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prints_id,,,,transcript,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.prints_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prints_description,,,,transcript,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prositeprofiles_id,,,,transcript,12,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,prositeprofiles_description,,,,transcript,13,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.sfld_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,sfld_id,,,,transcript,6,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.sfld_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,sfld_description,,,,transcript,7,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.smart_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,smart_id,,,,transcript,14,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.smart_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,smart_description,,,,transcript,15,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.superfamily_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,superfamily_id,,,,transcript,16,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.superfamily_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,superfamily_description,,,,transcript,17,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.interprofamily_id,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,interprofamily_id,,,,transcript,18,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.interprofamily_description,InterProDomainsCategory,InterPro Domains,TranscriptRecordClasses.TranscriptRecordClass,attribute,interprofamily_description,,,,transcript,19,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.signalp_41_probability,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,signalp_41_probability,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.signalp_50_probability,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,signalp_50_probability,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.signalp_60_probability,http://edamontology.org/topic_0140,Protein targeting and localization,TranscriptRecordClasses.TranscriptRecordClass,attribute,signalp_60_probability,,,,transcript,,results,record,download, -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_function,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_process,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_component,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_function,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_process,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_component,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_id_function,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_id_process,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,annotated_go_id_component,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_function,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_id_function,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_process,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_id_process,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_component,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,predicted_go_id_component,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.ec_numbers,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,ec_numbers,,,,transcript,,results,download,, -TranscriptRecordClasses.TranscriptRecordClass.ec_numbers_derived,http://edamontology.org/topic_1775,Function analysis,TranscriptRecordClasses.TranscriptRecordClass,attribute,ec_numbers_derived,,,,transcript,,results,download,download, -TranscriptRecordClasses.TranscriptRecordClass.gene_previous_ids,http://edamontology.org/topic_0219,Data identity and mapping,TranscriptRecordClasses.TranscriptRecordClass,attribute,gene_previous_ids,,,,transcript,,results,record,download, -GeneRecordClasses.GeneRecordClass.previous_ids,http://edamontology.org/topic_0219,Data identity and mapping,GeneRecordClasses.GeneRecordClass,attribute,previous_ids,,,,transcript,,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.transcripts_found_per_gene,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcripts_found_per_gene,,,,transcript,,,,, -TranscriptRecordClasses.TranscriptRecordClass.transcript_index_per_gene,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_index_per_gene,,,,transcript,,,,, -TranscriptRecordClasses.TranscriptRecordClass.has_missing_transcripts,http://edamontology.org/topic_0219,Curation and Annotation,TranscriptRecordClasses.TranscriptRecordClass,attribute,has_missing_transcripts,,,,transcript,,,,, -TranscriptRecordClasses.TranscriptRecordClass.transcript_sequence,http://edamontology.org/data_2977,Nucleic Acid Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,transcript_sequence,,,,transcript,,,download,, -TranscriptRecordClasses.TranscriptRecordClass.protein_sequence,http://edamontology.org/data_2976,Protein Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,protein_sequence,,,,transcript,,,,download, -TranscriptRecordClasses.TranscriptRecordClass.prot_seq_warn,http://edamontology.org/data_2976,Protein Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,prot_seq_warn,,,,transcript,,,,, -TranscriptRecordClasses.TranscriptRecordClass.cds,http://edamontology.org/data_2977,Nucleic Acid Sequence,TranscriptRecordClasses.TranscriptRecordClass,attribute,cds,,,,transcript,,,,download, -DynSpanRecordClasses.DynSpanRecordClass.Genes,http://edamontology.org/topic_0114,Gene Structure,DynSpanRecordClasses.DynSpanRecordClass,table,Genes,,,,,,results,record,download, -DynSpanRecordClasses.DynSpanRecordClass.ORFs,CodingPotentialCategory,CodingPotentialCategory,DynSpanRecordClasses.DynSpanRecordClass,table,ORFs,,,,,,,,download, -DynSpanRecordClasses.DynSpanRecordClass.SNPs,http://edamontology.org/topic_2885,DNA Polymorphism,DynSpanRecordClasses.DynSpanRecordClass,table,SNPs,,,,,,,,download, -DynSpanRecordClasses.DynSpanRecordClass.ESTs,http://edamontology.org/topic_3308,Transcriptomics,DynSpanRecordClasses.DynSpanRecordClass,table,ESTs,,,,,,,,download, -DynSpanRecordClasses.DynSpanRecordClass.primary_key,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,primary_key,,,,,,results,record-internal,, -DynSpanRecordClasses.DynSpanRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,DynSpanRecordClasses.DynSpanRecordClass,attribute,record_overview,,,,,,record-internal,,, -DynSpanRecordClasses.DynSpanRecordClass.overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,overview,,,,,,,,, -DynSpanRecordClasses.DynSpanRecordClass.otherInfo,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,otherInfo,,,,,,results,record,download, -DynSpanRecordClasses.DynSpanRecordClass.seq_source_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,seq_source_id,,,,,,results,record-internal,download, -DynSpanRecordClasses.DynSpanRecordClass.start_min,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,start_min,,,,,,results,record-internal,download, -DynSpanRecordClasses.DynSpanRecordClass.end_max,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,end_max,,,,,,results,record-internal,download, -DynSpanRecordClasses.DynSpanRecordClass.strand,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,strand,,,,,,results,record-internal,download, -DynSpanRecordClasses.DynSpanRecordClass.length,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,length,,,,,,results,record-internal,, -DynSpanRecordClasses.DynSpanRecordClass.spanGbrowseImageUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,DynSpanRecordClasses.DynSpanRecordClass,attribute,spanGbrowseImageUrl,,,,,,,record, -DynSpanRecordClasses.DynSpanRecordClass.jbrowseUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,DynSpanRecordClasses.DynSpanRecordClass,attribute,jbrowseUrl,,,,,,,record-internal, -DynSpanRecordClasses.DynSpanRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,DynSpanRecordClasses.DynSpanRecordClass,attribute,organism,,,,,,results,record-internal,download, -DynSpanRecordClasses.DynSpanRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,DynSpanRecordClasses.DynSpanRecordClass,attribute,location_text,,,,,,results,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.SequencePieces,http://edamontology.org/topic_0196,Sequence Assembly,SequenceRecordClasses.SequenceRecordClass,table,SequencePieces,,,,,,results,record,download, -SequenceRecordClasses.SequenceRecordClass.Aliases,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,table,Aliases,,,,,,results,record,download, -SequenceRecordClasses.SequenceRecordClass.Centromere,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,table,Centromere,,,,,3,results,record,download -SequenceRecordClasses.SequenceRecordClass.SequenceComments,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,table,SequenceComments,,,,,,results,record,download, -SequenceRecordClasses.SequenceRecordClass.Repeats,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,table,Repeats,,,,,,results,,download -SequenceRecordClasses.SequenceRecordClass.TandemRepeats,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,table,TandemRepeats,,,,,,results,,download -SequenceRecordClasses.SequenceRecordClass.LowComplexity,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,table,LowComplexity,,,,,,results,,download -SequenceRecordClasses.SequenceRecordClass.MercatorTable,http://edamontology.org/topic_0159,Sequence Comparison,SequenceRecordClasses.SequenceRecordClass,table,MercatorTable,,,,,,results,record-internal,, -SequenceRecordClasses.SequenceRecordClass.SequenceGffDbxrefs,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,table,SequenceGffDbxrefs,,,,,,,,, -SequenceRecordClasses.SequenceRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,attribute,source_id,,,,,,,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,attribute,primary_key,,,,,,results,record-internal,, -SequenceRecordClasses.SequenceRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,record_overview,,,,,,record-internal,,, -SequenceRecordClasses.SequenceRecordClass.overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,overview,,,,,,,,, -SequenceRecordClasses.SequenceRecordClass.project_id,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,project_id,,,,,,,record-internal,, -SequenceRecordClasses.SequenceRecordClass.lc_project_id,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,lc_project_id,,,,,,,record-internal,, -SequenceRecordClasses.SequenceRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,attribute,organism,,,,,,results,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.Taxonomy,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,table,Taxonomy,,,,,,,record,, -SequenceRecordClasses.SequenceRecordClass.dnaContextUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,dnaContextUrl,,,,,1,,record, -SequenceRecordClasses.SequenceRecordClass.jbrowseUrl,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,jbrowseUrl,,,,,1,,record-internal, -SequenceRecordClasses.SequenceRecordClass.JBrowse,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,JBrowse,,,,,3,results,record-internal,download -SequenceRecordClasses.SequenceRecordClass.sequence_retrieval,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,sequence_retrieval,,,,,3,results,record,download -SequenceRecordClasses.SequenceRecordClass.download_link,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SequenceRecordClasses.SequenceRecordClass,attribute,download_link ,,,,,,results,record,download -SequenceRecordClasses.SequenceRecordClass.chromosome,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,chromosome,,,,,,results,record-internal,, -SequenceRecordClasses.SequenceRecordClass.description,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,description,,,,,,,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.a_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,a_count,,,,,,results,record-internal,download -SequenceRecordClasses.SequenceRecordClass.c_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,c_count,,,,,,results,record-internal,download -SequenceRecordClasses.SequenceRecordClass.g_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,g_count,,,,,,results,record-internal,download -SequenceRecordClasses.SequenceRecordClass.t_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,t_count,,,,,,results,record-internal,download -SequenceRecordClasses.SequenceRecordClass.other_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,other_count,,,,,,results,record-internal,download -SequenceRecordClasses.SequenceRecordClass.formatted_length,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,formatted_length,,,,,,results,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.at_percent,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,SequenceRecordClasses.SequenceRecordClass,attribute,at_percent,,,,,,results,record-internal, -SequenceRecordClasses.SequenceRecordClass.organism_full,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,attribute,organism_full,,,,gene,,,record-internal,, -SequenceRecordClasses.SequenceRecordClass.chromosome_order_num,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,chromosome_order_num,,,,,,results,record-internal,, -SequenceRecordClasses.SequenceRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,SequenceRecordClasses.SequenceRecordClass,attribute,formatted_organism,,,,,,,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.sequence_description,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,sequence_description,,,,,,results,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.genbank_accession,http://edamontology.org/topic_3345,Data identity and mapping,SequenceRecordClasses.SequenceRecordClass,attribute,genbank_accession,,,,,,,,download, -SequenceRecordClasses.SequenceRecordClass.sequence_type,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SequenceRecordClasses.SequenceRecordClass,attribute,sequence_type,,,,,,results,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.has_msa,http://edamontology.org/topic_0159,Sequence Comparison,SequenceRecordClasses.SequenceRecordClass,attribute,has_msa,,,,,,,,download, -SequenceRecordClasses.SequenceRecordClass.gene_count,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,gene_count,,,,,,results,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.description,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,description,,,,,,results,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.is_annotated,http://edamontology.org/topic_0219,Curation and Annotation,SequenceRecordClasses.SequenceRecordClass,attribute,is_annotated,,,,,,,,download, -SequenceRecordClasses.SequenceRecordClass.release_policy,http://edamontology.org/topic_3068,Literature and Reference,SequenceRecordClasses.SequenceRecordClass,attribute,release_policy,,,,,,,record-internal,, -SequenceRecordClasses.SequenceRecordClass.attribution,http://edamontology.org/topic_3068,Literature and Reference,SequenceRecordClasses.SequenceRecordClass,attribute,attribution,,,,,,,record-internal,download, -SequenceRecordClasses.SequenceRecordClass.user_comment_link_url,http://www.w3.org/2002/07/owl#Thing,thing,SequenceRecordClasses.SequenceRecordClass,attribute,user_comment_link_url,,,,,,,record-internal,, -EstRecordClasses.EstRecordClass.ReferenceInfo,http://edamontology.org/topic_3068,Literature and Reference,EstRecordClasses.EstRecordClass,table,ReferenceInfo,,,,,,results,record,download, -EstRecordClasses.EstRecordClass.AlignmentInfo,http://edamontology.org/topic_0159,Sequence Comparison,EstRecordClasses.EstRecordClass,table,AlignmentInfo,,,,,,results,record,download, -EstRecordClasses.EstRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,EstRecordClasses.EstRecordClass,attribute,primary_key,,,,,,results,record-internal,, -EstRecordClasses.EstRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,record_overview,,,,,,record-internal,,, -EstRecordClasses.EstRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,organism,,,,,,results,record-internal,, -EstRecordClasses.EstRecordClass.overview,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,overview,,,,,,,record-internal,, -EstRecordClasses.EstRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,EstRecordClasses.EstRecordClass,attribute,source_id,,,,,,,record-internal,, -EstRecordClasses.EstRecordClass.a_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,a_count,,,,,,results,record,download -EstRecordClasses.EstRecordClass.c_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,c_count,,,,,,results,record,download -EstRecordClasses.EstRecordClass.g_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,g_count,,,,,,results,record,download -EstRecordClasses.EstRecordClass.t_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,t_count,,,,,,results,record,download -EstRecordClasses.EstRecordClass.other_count,http://edamontology.org/topic_0157,Sequence composition, complexity and repeats,EstRecordClasses.EstRecordClass,attribute,other_count,,,,,,results,record,download -EstRecordClasses.EstRecordClass.length,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,EstRecordClasses.EstRecordClass,attribute,length,,,,,,results,record-internal,download, -EstRecordClasses.EstRecordClass.dbest_name,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,dbest_name,,,,,,results,record-internal,download, -EstRecordClasses.EstRecordClass.vector,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,vector,,,,,,results,record-internal,download, -EstRecordClasses.EstRecordClass.stage,http://edamontology.org/topic_0219,Curation and Annotation,EstRecordClasses.EstRecordClass,attribute,stage,,,,,,results,record-internal,download, -EstRecordClasses.EstRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,organism_text,,,,,,,record-internal,download, -EstRecordClasses.EstRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,formatted_organism,,,,,,,record-internal,, -EstRecordClasses.EstRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,EstRecordClasses.EstRecordClass,attribute,ncbi_tax_id,,,,,,,record-internal,download, -EstRecordClasses.EstRecordClass.sequence,http://edamontology.org/data_2977,Nucleic Acid Sequence,EstRecordClasses.EstRecordClass,attribute,sequence,,,,,,,record,download, -EstRecordClasses.EstRecordClass.sequence_length,http://edamontology.org/data_2977,Nucleic Acid Sequence,EstRecordClasses.EstRecordClass,attribute,sequence_length,,,,,1,,record,download, -JunctionRecordClasses.JunctionRecordClass.SampleInfo,http://edamontology.org/topic_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,table,SampleInfo,,,,,,results,record,download, -##JunctionRecordClasses.JunctionRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,JunctionRecordClasses.JunctionRecordClass,attribute,primary_key,,,,,,results,record-internal,, -##JunctionRecordClasses.JunctionRecordClass.intron_feature_id,http://edamontology.org/data_3345,Data identity and mapping,JunctionRecordClasses.JunctionRecordClass,attribute,intron_feature_id,,,,,,,record-internal,download, -JunctionRecordClasses.JunctionRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,JunctionRecordClasses.JunctionRecordClass,attribute,record_overview,,,,,,record-internal,,, -JunctionRecordClasses.JunctionRecordClass.location,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,location,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.sequence_source_id,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,sequence_source_id,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.segment_start,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,segment_start,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.segment_end,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,segment_end,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.is_reversed,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,is_reversed,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.total_unique,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,total_unique,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.total_isrpm,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,total_isrpm,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.gene_source_id,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,gene_source_id,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.annotated_intron,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,annotated_intron,,,,,,,record,download, -JunctionRecordClasses.JunctionRecordClass.percent_max,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,,,,,,,,record,download, -##JunctionRecordClasses.JunctionRecordClass.#,http://edamontology.org/data_3308,Transcriptomics,JunctionRecordClasses.JunctionRecordClass,attribute,#,,,,,,,record,download, -LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.SampleInfo,http://edamontology.org/topic_0080,Gene Models,LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass,table,SampleInfo,,,,,,results,record,download, -LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.record_overview,http://edamontology.org/topic_0080,Gene Models,LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass,attribute,record_overview,,,,,,,record-internal,, -PopsetRecordClasses.PopsetRecordClass.Reference,http://edamontology.org/topic_3068,Literature and Reference,PopsetRecordClasses.PopsetRecordClass,table,Reference,,,,,,results,record,download, -PopsetRecordClasses.PopsetRecordClass.GeneOverlap,http://edamontology.org/topic_0159,Sequence Comparison,PopsetRecordClasses.PopsetRecordClass,table,GeneOverlap,,,,,,results,record,download, -PopsetRecordClasses.PopsetRecordClass.PopsetComments,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,PopsetComments,,,,,,results,record,download, -PopsetRecordClasses.PopsetRecordClass.organismTable,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,table,organismTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.descriptionTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,descriptionTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.productTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,productTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.strainTable,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,table,strainTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.hostTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,hostTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.noteTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,noteTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.isolation_sourceTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,isolation_sourceTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.geographic_locationTable,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,table,geographic_locationTable,,,,,,results,,download, -PopsetRecordClasses.PopsetRecordClass.primary_key,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,primary_key,,,,,,results,record-internal,, -PopsetRecordClasses.PopsetRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,record_overview,,,,,,record-internal,,, -PopsetRecordClasses.PopsetRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,PopsetRecordClasses.PopsetRecordClass,attribute,source_id,,,,,,,,download, -PopsetRecordClasses.PopsetRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,attribute,organism,,,,,,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.strain,http://edamontology.org/topic_0637,Taxonomy,PopsetRecordClasses.PopsetRecordClass,attribute,strain,,,,,,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.specific_host,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,specific_host,,,,,1,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.curated_isolation_source,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,curated_isolation_source,,,,,5,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.isolation_source,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,isolation_source,,,,,4,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.geographic_location,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,geographic_location,,,,,2,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.curated_geographic_location,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,curated_geographic_location,,,,,3,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.product,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,product,,,,,7,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.description,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,description,,,,,6,results,record-internal,download, -PopsetRecordClasses.PopsetRecordClass.note,http://edamontology.org/topic_0219,Curation and Annotation,PopsetRecordClasses.PopsetRecordClass,attribute,note,,,,,,,,download, -PopsetRecordClasses.PopsetRecordClass.sequence,http://edamontology.org/data_2977,Nucleic Acid Sequence,PopsetRecordClasses.PopsetRecordClass,attribute,sequence,,,,,,,record,download, -PopsetRecordClasses.PopsetRecordClass.sequence_length,http://edamontology.org/data_2977,Nucleic Acid Sequence,PopsetRecordClasses.PopsetRecordClass,attribute,sequence_length,,,,,1,,record,download, -PopsetRecordClasses.PopsetRecordClass.user_comment_link_url,http://www.w3.org/2002/07/owl#Thing,thing,PopsetRecordClasses.PopsetRecordClass,attribute,user_comment_link_url,,,,,,,record-internal,, -OrfRecordClasses.OrfRecordClass.Locations,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,table,Locations,,,,,,results,record-internal,download, -OrfRecordClasses.OrfRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,OrfRecordClasses.OrfRecordClass,attribute,primary_key,,,,,,results,,, -OrfRecordClasses.OrfRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,OrfRecordClasses.OrfRecordClass,attribute,record_overview,,,,,,record-internal,,, -OrfRecordClasses.OrfRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,OrfRecordClasses.OrfRecordClass,attribute,organism,,,,,,results,,download, -OrfRecordClasses.OrfRecordClass.orf_location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_location_text,,,,,2,results,,, -OrfRecordClasses.OrfRecordClass.overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrfRecordClasses.OrfRecordClass,attribute,overview,,,,,,,,, -OrfRecordClasses.OrfRecordClass.jbrowseTracks,http://edamontology.org/topic_0160,Sequence sites, features and motifs,OrfRecordClasses.OrfRecordClass,attribute,jbrowseTracks,,,,,,,, -OrfRecordClasses.OrfRecordClass.source_id,http://edamontology.org/topic_3345,Data identity and mapping,OrfRecordClasses.OrfRecordClass,attribute,source_id,,,,,,,,download, -OrfRecordClasses.OrfRecordClass.nas_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,nas_id,,,,,1,results,,download, -OrfRecordClasses.OrfRecordClass.orf_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_start,,,,,,,,download, -OrfRecordClasses.OrfRecordClass.orf_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_end,,,,,,,,download, -OrfRecordClasses.OrfRecordClass.orf_start_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_start_text,,,,,3,results,,download, -OrfRecordClasses.OrfRecordClass.orf_end_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_end_text,,,,,4,results,,download, -OrfRecordClasses.OrfRecordClass.orf_strand,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orf_strand,,,,,5,results,,download, -OrfRecordClasses.OrfRecordClass.orfGbrowseImageUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,orfGbrowseImageUrl,,,,,,,record,, -OrfRecordClasses.OrfRecordClass.jbrowseUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,OrfRecordClasses.OrfRecordClass,attribute,jbrowseUrl,,,,,,,record-internal,, -SnpRecordClasses.SnpRecordClass.context_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,context_start,,,,,,,record-internal,, -SnpRecordClasses.SnpRecordClass.context_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,context_end,,,,,,,record-internal,, -SnpRecordClasses.SnpRecordClass.align_context_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,align_context_start,,,,,,,record-internal,, -SnpRecordClasses.SnpRecordClass.align_context_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,align_context_end,,,,,,,record-internal,, -SnpRecordClasses.SnpRecordClass.snps_alignment_form,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,snps_alignment_form,,,,,,,record,, -SnpRecordClasses.SnpRecordClass.lc_project_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,lc_project_id,,,,,,,record-internal,, -SnpRecordClasses.SnpRecordClass.snpGbrowseImageUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,snpGbrowseImageUrl,,,,,,,record,, -SnpRecordClasses.SnpRecordClass.jbrowseUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,jbrowseUrl,,,,,,,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.snpChipGbrowseImageUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,snpChipGbrowseImageUrl,,,,,,,record,, -SnpChipRecordClasses.SnpChipRecordClass.jbrowseUrl,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,jbrowseUrl,,,,,,,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SnpChipRecordClasses.SnpChipRecordClass,attribute,record_overview,,,,,,record-internal,,, -SnpChipRecordClasses.SnpChipRecordClass.context_start,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,context_start,,,,,,,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.context_end,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,context_end,,,,,,,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.lc_project_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,lc_project_id,,,,,,,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.na_sequence_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,na_sequence_id,,,,,,,record-internal,download, -OrfRecordClasses.OrfRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,OrfRecordClasses.OrfRecordClass,attribute,organism_text,,,,,,,,, -OrfRecordClasses.OrfRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,OrfRecordClasses.OrfRecordClass,attribute,formatted_organism,,,,,,results,,download, -OrfRecordClasses.OrfRecordClass.sequence,http://edamontology.org/data_2976,Protein Sequence,OrfRecordClasses.OrfRecordClass,attribute,sequence,,,,,,,record,download, -OrfRecordClasses.OrfRecordClass.sequence_length,http://edamontology.org/data_2976,Protein Sequence,OrfRecordClasses.OrfRecordClass,attribute,sequence_length,,,,,,,record,, -OrfRecordClasses.OrfRecordClass.attribution,http://edamontology.org/topic_3068,Literature and Reference,OrfRecordClasses.OrfRecordClass,attribute,attribution,,,,,,,record-internal,download, -PathwayRecordClasses.PathwayRecordClass.CompoundsMetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,CompoundsMetabolicPathways,,,,,,,record,download, -PathwayRecordClasses.PathwayRecordClass.PathwayReactionsXrefs,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayReactionsXrefs,,,,,,,record,, -PathwayRecordClasses.PathwayRecordClass.PathwayGraphs,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayGraphs,,,,,,,record-internal,, -PathwayRecordClasses.PathwayRecordClass.PathwayNodes,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayNodes,,,,,,,record-internal,, -PathwayRecordClasses.PathwayRecordClass.PathwayEdges,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,PathwayEdges,,,,,,,record-internal,, -PathwayRecordClasses.PathwayRecordClass.ECNumberOrganismMap,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,ECNumberOrganismMap,,,,,,,,, -##PathwayRecordClasses.PathwayRecordClass.CompoundLabel,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,table,CompoundLabel,,,,,,results,record,download, -PathwayRecordClasses.PathwayRecordClass.source_id,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,source_id,,,,,,,record-internal,, -PathwayRecordClasses.PathwayRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,PathwayRecordClasses.PathwayRecordClass,attribute,record_overview,,,,,,record-internal,,, -PathwayRecordClasses.PathwayRecordClass.project_id,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,project_id,,,,,,,record-internal,download, -PathwayRecordClasses.PathwayRecordClass.source,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,source,,,,,,results,record-internal,download, -PathwayRecordClasses.PathwayRecordClass.primary_key,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,primary_key,,,,,,,record-internal,download, -PathwayRecordClasses.PathwayRecordClass.name,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,name,,,,,,results,record-internal,download, -PathwayRecordClasses.PathwayRecordClass.total_enzyme_count,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,total_enzyme_count,,,,,,results,record-internal,download, -PathwayRecordClasses.PathwayRecordClass.total_compound_count,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,total_compound_count,,,,,,results,record-internal,download, -PathwayRecordClasses.PathwayRecordClass.url,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,url,,,,,,,record-internal,, -##PathwayRecordClasses.PathwayRecordClass.external_url,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,external_url,,,,,,,record,, -PathwayRecordClasses.PathwayRecordClass.drawing,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,drawing,,,,,,,record,, -PathwayRecordClasses.PathwayRecordClass.external_db_name,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,external_db_name,,,,,,,record-internal,, -PathwayRecordClasses.PathwayRecordClass.external_db_version,http://edamontology.org/topic_0753,Metabolic Pathways,PathwayRecordClasses.PathwayRecordClass,attribute,external_db_version,,,,,,,record-internal,download, -SnpRecordClasses.SnpRecordClass.HTSStrains,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,table,HTSStrains,,,,,3,,record,, -SnpRecordClasses.SnpRecordClass.AlleleCount,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,table,AlleleCount,,,,,1,,record,, -SnpRecordClasses.SnpRecordClass.CountrySummary,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,table,CountrySummary,,,,,2,,record,download, -SnpRecordClasses.SnpRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,SnpRecordClasses.SnpRecordClass,attribute,primary_key,,,,,,results,,, -SnpRecordClasses.SnpRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,SnpRecordClasses.SnpRecordClass,attribute,record_overview,,,,,,record-internal,,, -SnpRecordClasses.SnpRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,organism,,,,,,,,, -SnpRecordClasses.SnpRecordClass.snp_overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SnpRecordClasses.SnpRecordClass,attribute,snp_overview,,,,,,,,, -SnpRecordClasses.SnpRecordClass.gene_context,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SnpRecordClasses.SnpRecordClass,attribute,gene_context,,,,,,,, -SnpRecordClasses.SnpRecordClass.seq_source_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,seq_source_id,,,,,,record-internal,,download, -SnpRecordClasses.SnpRecordClass.location_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,location_text,,,,,,,,download, -SnpRecordClasses.SnpRecordClass.snp_location,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,snp_location,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.chromosome_order_num,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,chromosome_order_num,,,,,,,,download, -SnpRecordClasses.SnpRecordClass.location,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpRecordClasses.SnpRecordClass,attribute,location,,,,,,,,, -SnpRecordClasses.SnpRecordClass.reference_strain,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,reference_strain,,,,,,,,, -SnpRecordClasses.SnpRecordClass.reference_na,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,reference_na,,,,,,,,, -SnpRecordClasses.SnpRecordClass.reference_aa,http://edamontology.org/topic_2886,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,reference_aa,,,,,,,,, -SnpRecordClasses.SnpRecordClass.ref_aa_with_position,http://edamontology.org/topic_2887,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,ref_aa_with_position,,,,,,,record-internal,download, -SnpRecordClasses.SnpRecordClass.lflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,lflank,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,allele,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.rflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,rflank,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.snp_context,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,snp_context,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.sampleId,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,sampleId,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.snp_context_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,snp_context_gene_strand,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.gene_source_id,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,gene_source_id,,,,,,download,record-internal,, -SnpRecordClasses.SnpRecordClass.linkedGeneId,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,linkedGeneId,,,,,,results,record-internal,, -SnpRecordClasses.SnpRecordClass.gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,gene_strand,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.is_coding,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,is_coding,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.position_in_CDS,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,position_in_CDS,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.position_in_protein,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,position_in_protein,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.has_nonsynonymous_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,has_nonsynonymous_allele,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.lflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,lflank_gene_strand,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.allele_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,allele_gene_strand,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.rflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,rflank_gene_strand,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.major_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_allele_frequency,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.minor_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_allele_frequency,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.major_allele_and_freq,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_allele_and_freq,,,,,,,record-internal,download, -SnpRecordClasses.SnpRecordClass.minor_allele_and_freq,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_allele_and_freq,,,,,,,record-internal,download, -SnpRecordClasses.SnpRecordClass.distinct_strain_count,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,distinct_strain_count,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.major_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_allele,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.minor_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_allele,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.major_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,major_product,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.minor_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpRecordClasses.SnpRecordClass,attribute,minor_product,,,,,,results,record-internal,download, -SnpRecordClasses.SnpRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,organism_text,,,,,,,record-internal,, -SnpRecordClasses.SnpRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,formatted_organism,,,,,,results,record-internal,, -SnpRecordClasses.SnpRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,SnpRecordClasses.SnpRecordClass,attribute,ncbi_tax_id,,,,,,,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.StrainsWithMetaData,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,table,StrainsWithMetaData,,,,,3,,record,download, -SnpChipRecordClasses.SnpChipRecordClass.OtherSNPs,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,table,OtherSNPs,,,,,2,,record,download, -SnpChipRecordClasses.SnpChipRecordClass.CountrySummary,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,table,CountrySummary,,,,,1,,record,download, -SnpChipRecordClasses.SnpChipRecordClass.primary_key,http://edamontology.org/topic_3345,Data identity and mapping,SnpChipRecordClasses.SnpChipRecordClass,attribute,primary_key,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,organism,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.snp_overview,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_overview,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.gene_context,http://edamontology.org/topic_0160,Sequence sites, features and motifs,SnpChipRecordClasses.SnpChipRecordClass,attribute,gene_context,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.type,http://edamontology.org/topic_0219,Curation and Annotation,SnpChipRecordClasses.SnpChipRecordClass,attribute,type,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.seq_source_id,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,seq_source_id,,,,,,,,download, -SnpChipRecordClasses.SnpChipRecordClass.start_min_text,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,start_min_text,,,,,,,,download, -SnpChipRecordClasses.SnpChipRecordClass.snp_location,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_location,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.chromosome_order_num,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,chromosome_order_num,,,,,,,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.start_min,GenomicSequenceLocationCategory,GenomicSequenceLocationCategory,SnpChipRecordClasses.SnpChipRecordClass,attribute,start_min,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.reference_strain,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,reference_strain,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.reference_na,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,reference_na,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.reference_aa,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,reference_aa,,,,,,,,download, -SnpChipRecordClasses.SnpChipRecordClass.lflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,lflank,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,allele,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.rflank,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,rflank,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.gene_source_id,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,gene_source_id,,,,,,,,, -SnpChipRecordClasses.SnpChipRecordClass.linkedGeneId,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,linkedGeneId,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.gene_strand,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,gene_strand,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.is_coding,http://edamontology.org/topic_0114,Gene Structure,SnpChipRecordClasses.SnpChipRecordClass,attribute,is_coding,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.position_in_CDS,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,position_in_CDS,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.position_in_protein,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,position_in_protein,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.has_nonsynonymous_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,has_nonsynonymous_allele,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.lflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,lflank_gene_strand,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.allele_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,allele_gene_strand,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.rflank_gene_strand,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,rflank_gene_strand,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.major_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_allele_frequency,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.minor_allele_frequency,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_allele_frequency,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.major_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_allele,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.major_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_product,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.minor_allele,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_allele,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.minor_product,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_product,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.distinct_strain_count,http://edamontology.org/topic_2885,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,distinct_strain_count,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.snp_context,http://edamontology.org/topic_2886,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_context,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.snp_context_gene_strand,http://edamontology.org/topic_2887,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,snp_context_gene_strand,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.major_allele_and_freq,http://edamontology.org/topic_2888,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,major_allele_and_freq,,,,,,,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.minor_allele_and_freq,http://edamontology.org/topic_2889,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,minor_allele_and_freq,,,,,,,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.ref_aa_with_position,http://edamontology.org/topic_2890,DNA Polymorphism,SnpChipRecordClasses.SnpChipRecordClass,attribute,ref_aa_with_position,,,,,,results,record-internal,download, -SnpChipRecordClasses.SnpChipRecordClass.organism_text,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,organism_text,,,,,,,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.formatted_organism,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,formatted_organism,,,,,,results,record-internal,, -SnpChipRecordClasses.SnpChipRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,SnpChipRecordClasses.SnpChipRecordClass,attribute,ncbi_tax_id,,,,,,,,download, -CompoundRecordClasses.CompoundRecordClass.Properties,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Properties,,,,,,results,record,download, -CompoundRecordClasses.CompoundRecordClass.IupacNames,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,IupacNames,,,,,,results,record,download, -CompoundRecordClasses.CompoundRecordClass.Definition,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Definition,,,,,,results,record,download, -CompoundRecordClasses.CompoundRecordClass.SecondaryIds,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,SecondaryIds,,,,,,results,record,download, -CompoundRecordClasses.CompoundRecordClass.Synonyms,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Synonyms,,,,,,results,record,download, -CompoundRecordClasses.CompoundRecordClass.CompoundName,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,CompoundName,,,,,,,Record-internal,, -CompoundRecordClasses.CompoundRecordClass.CompoundsMetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,CompoundRecordClasses.CompoundRecordClass,table,CompoundsMetabolicPathways,,,,,2,results,record,download, -CompoundRecordClasses.CompoundRecordClass.MetabolicPathways,http://edamontology.org/topic_0753,Metabolic Pathways,CompoundRecordClasses.CompoundRecordClass,table,MetabolicPathways,,,,,1,results,record,download, -CompoundRecordClasses.CompoundRecordClass.Structures,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,Structures,,,,,, ,record,, -CompoundRecordClasses.CompoundRecordClass.MassSpecGraphs,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,MassSpecGraphs,,,,,,results,record,download, -CompoundRecordClasses.CompoundRecordClass.MassSpecGraphsDataTable,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,table,MassSpecGraphsDataTable,,,,,,,record-internal,download, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.primary_key,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,primary_key,,,,,,results,,, -CompoundRecordClasses.CompoundRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,CompoundRecordClasses.CompoundRecordClass,attribute,record_overview,,,,,,record-internal,,, -CompoundRecordClasses.CompoundRecordClass.overview,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,overview,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.definition,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,definition,,,,,,results,,download, -CompoundRecordClasses.CompoundRecordClass.formula,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,formula,,,,,,results,,download, -CompoundRecordClasses.CompoundRecordClass.secondary_ids,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,secondary_ids,,,,,,results,,download, -CompoundRecordClasses.CompoundRecordClass.name,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,name,,,,,,results,,download, -CompoundRecordClasses.CompoundRecordClass.synonyms,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,synonyms,,,,,,,,, -CompoundRecordClasses.CompoundRecordClass.default_structure,http://edamontology.org/topic_3172,Metabolomics,CompoundRecordClasses.CompoundRecordClass,attribute,default_structure,,,,,,,record-internal,, -,,,,,,,,,,,,,download, -DatasourceRecordClasses.DatasourceRecordClass.Publications,http://edamontology.org/topic_3068,Literature and Reference,DatasourceRecordClasses.DatasourceRecordClass,table,Publications,,,,datasource,,record,download,, -DatasourceRecordClasses.DatasourceRecordClass.References,http://edamontology.org/topic_3068,Literature and Reference,DatasourceRecordClasses.DatasourceRecordClass,table,References,,,,datasource,,record,download,, -DatasourceRecordClasses.DatasourceRecordClass.Version,http://edamontology.org/topic_0219,Curation and Annotation,DatasourceRecordClasses.DatasourceRecordClass,table,Version,,,,datasource,,record,download,, -OrganismRecordClasses.OrganismRecordClass.SequenceCounts,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,table,SequenceCounts,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.GeneCounts,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,table,GeneCounts,,,,,,results,record,, -OrganismRecordClasses.OrganismRecordClass.GenomeSequencingAndAnnotationAttribution,GenomicSequencePropertiesCategory,Genomic Sequence Properties Category,OrganismRecordClasses.OrganismRecordClass,table,GenomeSequencingAndAnnotationAttribution,,,,,4,results,record,, -OrganismRecordClasses.OrganismRecordClass.primary_key,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,primary_key,,,,,,results,,download, -OrganismRecordClasses.OrganismRecordClass.overview,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,overview,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.record_overview,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,record_overview,,,,,,record-internal,,, -OrganismRecordClasses.OrganismRecordClass.URLGenomeFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLGenomeFasta,,,,,,,,download, -OrganismRecordClasses.OrganismRecordClass.URLtranscriptFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLtranscriptFasta,,,,,,,,download , -OrganismRecordClasses.OrganismRecordClass.URLcdsFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLcdsFasta,,,,,,,,download , -OrganismRecordClasses.OrganismRecordClass.URLproteinFasta,http://edamontology.org/data_2044,sequences,OrganismRecordClasses.OrganismRecordClass,attribute,URLproteinFasta,,,,,,,,download , -,,,,,,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.URLgff,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,URLgff,,,,,,,,download, -,,,,,,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.strain,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,strain,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.contigCount,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,contigCount,,,,,3,results,record,download, -OrganismRecordClasses.OrganismRecordClass.supercontigCount,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,supercontigCount,,,,,2,results,record,download, -OrganismRecordClasses.OrganismRecordClass.chromosomeCount,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,chromosomeCount,,,,,1,results,record,download, -OrganismRecordClasses.OrganismRecordClass.genecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,genecount,,,,,,,record,download, -OrganismRecordClasses.OrganismRecordClass.genecount_number,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,genecount_number,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.codinggenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,codinggenecount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.pseudogenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,pseudogenecount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.othergenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,othergenecount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.ecnumbercount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,ecnumbercount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.gocount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,gocount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.popsetcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,popsetcount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.rnaseqcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,rnaseqcount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.chipchipgenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,chipchipgenecount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.rtpcrcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,rtpcrcount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.estcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,estcount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.snpcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,snpcount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.orthologcount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,orthologcount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.arraygenecount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,arraygenecount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.proteomicscount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,proteomicscount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.tfbscount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,tfbscount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.communitycount,http://edamontology.org/data_0916,Gene report,OrganismRecordClasses.OrganismRecordClass,attribute,communitycount,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.download_link,http://edamontology.org/topic_0160,http://edamontology.org/data_0916,Gene report,attribute,download_link ,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.organism_name,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,organism_name,,,,,,,,results, -OrganismRecordClasses.OrganismRecordClass.species,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,species,,,,,,results,record,download, -OrganismRecordClasses.OrganismRecordClass.is_annotated_genome,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,is_annotated_genome,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.is_reference_strain,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,is_reference_strain,,,,,,results,,download, -OrganismRecordClasses.OrganismRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,organism,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.organism_full,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,organism_full,,,,gene,,,record-internal,, -OrganismRecordClasses.OrganismRecordClass.ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,ncbi_tax_id,,,,,,,,download, -OrganismRecordClasses.OrganismRecordClass.species_ncbi_tax_id,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,species_ncbi_tax_id,,,,,,,,download, -OrganismRecordClasses.OrganismRecordClass.ncbi_taxon_url,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,ncbi_taxon_url,,,,,,results,record,, -OrganismRecordClasses.OrganismRecordClass.species_ncbi_taxon_url,http://edamontology.org/topic_0637,Taxonomy,OrganismRecordClasses.OrganismRecordClass,attribute,species_ncbi_taxon_url,,,,,,results,record,, -OrganismRecordClasses.OrganismRecordClass.genome_source,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,genome_source,,,,,,results,,download, -OrganismRecordClasses.OrganismRecordClass.annotation_source,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,annotation_source,,,,,,results,,download, -OrganismRecordClasses.OrganismRecordClass.project_id,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,project_id,,,,,,results, ,download, -OrganismRecordClasses.OrganismRecordClass.database_version,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,database_version,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.busco_genome,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,busco_genome,,,,,,results,,download, -OrganismRecordClasses.OrganismRecordClass.busco_protein,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,busco_protein,,,,,,results,,download, -OrganismRecordClasses.OrganismRecordClass.busco_lineage_dataset,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,busco_lineage_dataset,,,,,,results,,download, -,,,,,,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.megabps,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,megabps,,,,,,,,download, -OrganismRecordClasses.OrganismRecordClass.megabpsurl,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,megabpsurl,,,,,,results,,, -OrganismRecordClasses.OrganismRecordClass.genecounturl,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,genecounturl,,,,,,results,record,, -OrganismRecordClasses.OrganismRecordClass.isOrganellar_flag,http://edamontology.org/topic_0219,Curation and Annotation,OrganismRecordClasses.OrganismRecordClass,attribute,isOrganellar_flag,,,,,,results,,download, -OrganismRecordClasses.OrganismRecordClass.is_published,http://edamontology.org/topic_3068,Literature and Reference,OrganismRecordClasses.OrganismRecordClass,attribute,is_published,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.genome_version,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,genome_version,,,,,,record-internal,results,download, -OrganismRecordClasses.OrganismRecordClass.annotation_version,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,annotation_version,,,,,,record-internal,results,download, -OrganismRecordClasses.OrganismRecordClass.release_policy,http://edamontology.org/topic_3068,Literature and Reference,OrganismRecordClasses.OrganismRecordClass,attribute,release_policy,,,,,,,,, -OrganismRecordClasses.OrganismRecordClass.is_in_apollo,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,is_in_apollo,,,,,,,,download, -OrganismRecordClasses.OrganismRecordClass.apollolink,GenomicSequencePropertiesCategory,GenomicSequencePropertiesCategory,OrganismRecordClasses.OrganismRecordClass,attribute,apollolink,,,,,,results,,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.host,http://edamontology.org/topic_0637,Taxonomy,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,host,,,,,,results,record,download, -RflpIsolateRecordClasses.RflpIsolateRecordClass.geographic_location,http://edamontology.org/topic_0219,Curation and Annotation,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,geographic_location,,,,,2,results,record,download, -RflpIsolateRecordClasses.RflpIsolateRecordClass.organ,http://edamontology.org/topic_3067,Curation and Annotation,RflpIsolateRecordClasses.RflpIsolateRecordClass,attribute,organ,,,,,2,results,record,, -UserFileRecords.UserFile.filename_link,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,filename_link,,,,,,results,,, -UserFileRecords.UserFile.title,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,title,,,,,,results,,, -UserFileRecords.UserFile.notes,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,notes,,,,,,results,,, -UserFileRecords.UserFile.filesize,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,filesize,,,,,,results,,, -UserFileRecords.UserFile.format,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,format,,,,,,results,,, -UserFileRecords.UserFile.uploadtime,http://www.w3.org/2002/07/owl#Thing,thing,UserFileRecords.UserFile,attribute,uploadtime,,,,,,results,,, -derisi_timeseries_pie,http://purl.obolibrary.org/obo/OBI_0001985,,PathwayRecordClasses.PathwayRecordClass,attribute,derisi_timeseries_pie,,,,,,record-internal,graph-internal,, -## TEMPLATE_ANCHOR datasetCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR chipchipCategories,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR graphTextAttributeCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR profileSampleAttributesCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR profileMinMaxAttributesCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR profileMinMaxAttributesRnaSenseCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR profileMinMaxAttributesRnaAntisenseCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR phenotypeEdaAttributeCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR cellularLocalizationEdaAttributeCategory,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR metaboliteGraphTextAttributeCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR graphTextAttributeCategoryPathwayRecord,,,,,,,,,,,,,, -searchCategory-phenotype-text,http://edamontology.org/topic_3298,Phenomics,,,text-phenotype,Phenotype Text,PT,Search for genes based on text searching phenotype data.,,,internal,,, -searchCategory-phenotype-molecular,http://edamontology.org/topic_3298,Phenomics,,,molecular-phenotype-data,Molecular Phenotype,MP,Search for genes based on phenotype data,,,internal,,, -searchCategory-cellular-localization-quantitative,http://edamontology.org/topic_0140,Protein targeting and localisation,,,quantitative-cellular-localization,Quantitative Cellular Localization,QCL,Search for genes based on quantitative cellular localization data,,,internal,,, -searchCategory-cellular-localization-goassoc,http://edamontology.org/topic_0140,Protein targeting and localisation,,,goassoc-cellular-localization,GO Terms from Cellular Localization,GOCL,Search for genes based on GO Terms from cellular localization data,,,internal,,, -searchCategory-longread,http://edamontology.org/topic_0114,Gene Structure,,,longread,Long Read Evidence,LR,Search for genes based on long-read RNASeq evidence,,,internal,,, -searchCategory-longreadspan,,,,,longreadspan,Long Read Span Evidence,LR,Search for genomic segments based on long-read RNASeq evidence,,,internal,,, -searchCategory-phenotype-curated,http://edamontology.org/topic_3298,Phenomics,,,curated-phenotype,Curated Phenotype,CP,Search for genes based on curated phenotype data sets,,,internal,,, -searchCategory-association-to-genomic-segments,http://edamontology.org/topic_3298,Phenomics,,,association-to-genomic-segments,Association to Genomic Segments,AGS,Search for genes which are associated to genomic segments by eQTL,,,internal,,, -searchCategory-similarity-of-association,http://edamontology.org/topic_3298,Phenomics,,,similarity-of-association,Similarity of Association,SA,Search for genes by similarity of association.,,,internal,,, -searchCategory-T-test-2-sample-unequal-variance,http://edamontology.org/topic_0804,immunoproteins,genes,antigens,,,Limma Volcano,Limma Volcano,LIMV,Search for genes based on differential protein abundance calculated by Limma, visualised with a volcano plot,,,internal -searchCategory-putative-function,http://edamontology.org/topic_3298,Phenomics,,,putative-function,Putative Function,PF,Search for genes based on comparisons of RNAi target sequencing coverage.,,,internal,,, -searchCategory-eqtl-similarity,http://edamontology.org/topic_3298,Phenomics,,,eqtl-similarity,Similarity,S,Search for genes which have a similar profile for an experiment.,,,internal,,, -searchCategory-similarity,http://edamontology.org/topic_3308,Transcriptomics,,,similarity,Similarity,S,Search for genes which have a similar profile for an experiment.,,,internal,,, -searchCategory-proteomics-quantitative-ratio,http://edamontology.org/topic_0121,Proteomics,,,proteomics-quantitative-ratio,Quantitative Ratio,QR,Search for genes which are differentiated by log2 ratio of heavy to light to determine confidence Log2(H/L).,,,internal,,, -searchCategory-proteomics-direct-comparison,http://edamontology.org/topic_0121,Proteomics,,,proteomics-direct-comparison,Direct Comparison,DC,Search for genes which are differentially expressed in a 2 state direct comparison.,,,internal,,, -searchCategory-functional-gene-list,http://edamontology.org/topic_1775,Function prediction,,,functional-gene-list,Gene List,GL,Search for genes which were included in a gene list.,,,internal,,, -searchCategory-subcellular-gene-list,http://edamontology.org/topic_0140,Protein targeting and localization,,,subcellular-gene-list,Gene List,GL,Search for genes which were included in a gene list.,,,internal,,, -searchCategory-proteomics-direct-conf-comparison,http://edamontology.org/topic_0121,Proteomics,,,proteomics-direct-conf-comparison,Direct Confidence Comparison,DCC,Search for genes which are differentially expressed in a 2 state direct comparison with confidence.,,,internal,,, -searchCategory-transcriptomics-direct-comparison,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-direct-comparison,Direct Comparison,DC,Search for genes which are differentially expressed in a 2 state direct comparison.,,,internal,,, -searchCategory-coexpression,http://edamontology.org/topic_3308,Transcriptomics,,,coexpression,Coexpression,C,Search for genes which have positive or negative correlations with a set of genes.,,,internal,,, -searchCategory-splice-site-loc,http://edamontology.org/topic_3308,Transcriptomics,,,splice-site-loc,Splice Site Loc,SSL,Search for genes near experimental splice site locations.,,,internal,,, -searchCategory-proteomics-percentile,http://edamontology.org/topic_0121,Proteomics,,,proteomics-percentile,Percentile,P,Search for genes based on the rank of expression w/in an experiment.,,,internal,,, -searchCategory-transcriptomics-percentile,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-percentile,Percentile,P,Search for genes based on the rank of expression w/in an experiment.,,,internal,,, -searchCategory-transcriptomics-metacycle,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-metacycle,MetaCycle,MC,Search for genes based on MetaCycle methods,,,internal,,, -searchCategory-transcriptomics-iterativeWGCNA,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-iterativeWGCNA,WGCNA,W,Search for genes based on iterativeWGCNA methods,,,internal,,, -searchCategory-metabolomics-fold-change,http://edamontology.org/topic_3172,Metabolomics,,,metabolomics-fold-change,Fold Change,FC,Search for compounds which are differentially expressed between two sets of samples,,,internal,,, -,,,,,,,,,,,,,, -searchCategory-interactions,http://edamontology.org/topic_0602,interactions and pathways,,,GenesByY2hInteractions,Interactions,I,Search for genes for interactions.,,,internal,,, -,,,,,,,,,,,,,, -searchCategory-chipchip,http://edamontology.org/topic_3173,Epigenomics,,,GenesByChIPchip,chip-chip,CC,Search for genes with evidence for expression based on ChIP-chip peaks.,,,internal,,, -,,,,,,,,,,,,,, -searchCategory-metabolomics-percentile,http://edamontology.org/topic_3172,Metabolomics,,,metabolomics-percentile,Percentile,P,Search for compounds which are differentially expressed between two sets of samples,,,internal,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -searchCategory-proteomics-fold-change,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-change,Fold Change,FC,Search for genes which are differentially expressed between two sets of samples.,,,internal,,, -searchCategory-transcriptomics-fold-change,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-change,Fold Change,FC,Search for genes which are differentially expressed between two sets of samples. A set can have only one sample. This is an arithmetic calculation and no statistical significance is provided.,,,internal,,, -,,,,,,,,,,,,,, -searchCategory-transcriptomics-sense-antisense,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-sense-antisense,SenseAntisense,SA,Search for genes that exhibit patterns of sense and antisense transcript expression between two sets of samples. This search is available for RNA seq datasets where read directionality (strandedness) was determined.,,,internal,,, -searchCategory-proteomics-fold-difference,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-difference,Fold Difference,FD,Search for genes which are different between two sets of samples.,,,internal,,, -searchCategory-transcriptomics-fold-difference,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-difference,Fold Difference,FD,Search for genes which are different between two sets of samples.,,,internal,,, -searchCategory-fold-change-with-pvalue,http://edamontology.org/topic_3308,Transcriptomics,,,fold-change-with-pvalue,Fold Change with pValue,FCpV,Search for genes which are differentially expressed between 2 samples. Fishers Exact Test p values for each gene/sample comparison were precomputed.,,,internal,,, -searchCategory-proteomics-fold-change-with-confidence,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-change-with-confidence,Fold Change with Confidence,FCC,Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates.,,,internal,,, -searchCategory-transcriptomics-fold-change-with-confidence,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-change-with-confidence,Fold Change with Confidence,FCC,Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates.,,,internal,,, -searchCategory-proteomics-fold-change-with-fdr,http://edamontology.org/topic_0121,Proteomics,,,proteomics-fold-change-with-fdr,Fold Change with FDR,FCF,Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates.,,,internal,,, -searchCategory-transcriptomics-differential-expression,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-differential_expression,Differential Expression,DE,Search for genes that are differentially expressed between 2 samples with at least 2 biological replicates each. Adjusted p-values for each gene/sample were pre-computed using DESeq.,,,internal,,, -searchCategory-transcriptomics-fold-change-with-fdr,http://edamontology.org/topic_3308,Transcriptomics,,,transcriptomics-fold-change-with-fdr,Fold Change with FDR,FCF,Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates.,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesInGlycosomeProteome,searchCategory-proteomics-quantitative-ratio,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesInGlycosomeProteome,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeText,searchCategory-phenotype-text,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotypeText,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeTextTbrucei,searchCategory-phenotype-text,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotypeTextTbrucei,,,,,,internal,,, -,,,,,,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC,searchCategory-phenotype-curated,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_Segments,searchCategory-association-to-genomic-segments,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEQTL_Segments,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity,searchCategory-similarity,Transcriptomics,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByProfileSimilarity,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_HaploGrpSimilarity,searchCategory-similarity-of-association,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEQTL_HaploGrpSimilarity,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByICEMRHostResponse,searchCategory-T-test-2-sample-unequal-variance,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByICEMRHostResponse,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection,searchCategory-T-test-2-sample-unequal-variance,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByToxoProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByToxoProfileSimilarity,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByProfileSimilarity,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEqtlProfileSimilarity,searchCategory-eqtl-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByEqtlProfileSimilarity,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGametocyteProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByGametocyteProfileSimilarity,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCryptoRtpcrProfileSimilarity,searchCategory-similarity,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCryptoRtpcrProfileSimilarity,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRtPcrFoldChange,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRtPcrFoldChange,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGH,searchCategory-fold-difference,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCortesCGH,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGHCrossStrain,searchCategory-fold-difference,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByCortesCGHCrossStrain,,,,,,internal,webservice,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByName,http://edamontology.org/topic_0199,Genetic Variation,RflpIsolateRecordClasses.RflpIsolateRecordClass,search,RflpIsolateQuestions.ByName,,,,,,menu,webservice,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.BySampleDetails,http://edamontology.org/topic_0199,Genetic Variation,RflpIsolateRecordClasses.RflpIsolateRecordClass,search,RflpIsolateQuestions.BySampleDetails,,,,,,menu,webservice,, -RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByGenotypeNumber,http://edamontology.org/topic_0199,Genetic Variation,RflpIsolateRecordClasses.RflpIsolateRecordClass,search,RflpIsolateQuestions.ByGenotypeNumber,,,,,,menu,,, -## TEMPLATE_ANCHOR internalGeneSearchCategory,,,,,,,,,,,,,, -## TEMPLATE_ANCHOR internalSpanSearchCategory,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -## ToxoDB Chip,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -rtpcr_graph,DatasetRecordClasses.DatasetRecordClass.DS_2bf995383e,,TranscriptRecordClasses.TranscriptRecordClass,attribute,rtpcr_graph,,,,gene,,results,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,TranscriptRecordClasses.TranscriptRecordClass,attribute,tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph,,,,gene,,results,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,download, -prob_MAP,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,prob_MAP,,,,gene,,results,,, -,,,,,,,,,,,,download,, -prob_MCMC,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,prob_MCMC,,,,gene,,results ,,, -,,,,,,,,,,,,,download, -MAP_location,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,MAP_location,,,,gene,,results,,, -,,,,,,,,,,,,,download, -MCMC_location,DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5,,TranscriptRecordClasses.TranscriptRecordClass,attribute,MCMC_location,,,,gene,,results,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from the CDS Sequence,,,,1,internal,,download, -TranscriptRecordClasses.TranscriptRecordClass.no_tet_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,no_tet_cds,,,,transcript,1,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.bfd3_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd3_cds,,,,transcript,2,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.bfd6_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd6_cds,,,,transcript,3,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.pf_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,pf_cds,,,,transcript,4,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.dif_cds,quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,dif_cds,,,,transcript,5,results,,, -,,,,,,,,,,,,,, -foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from the CDS Sequence - Fold-Change,,,,2,internal,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd3_cds,,,,transcript,1,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd6_cds,,,,transcript,2,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_pf_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_pf_cds,,,,transcript,3,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_dif_cds,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_dif_cds,,,,transcript,4,results,,, -,,,,,,,,,,,,,, -quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from gene model (5 prime UTR + CDS),,,,3,internal,,download, -TranscriptRecordClasses.TranscriptRecordClass.no_tet_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,no_tet_model,,,,transcript,1,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.bfd3_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd3_model,,,,transcript,2,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.bfd6_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,bfd6_model,,,,transcript,3,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.pf_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,pf_model,,,,transcript,4,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.dif_model,quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,dif_model,,,,transcript,5,results,,, -,,,,,,,,,,,,,, -foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,DatasetRecordClasses.DatasetRecordClass.DS_98fb258539,,,,foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,Quantitated from gene model (5 prime UTR + CDS) - Fold-Change,,,,4,internal,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd3_model,,,,transcript,1,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_bfd6_model,,,,transcript,2,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_pf_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_pf_model,,,,transcript,3,results,,download, -TranscriptRecordClasses.TranscriptRecordClass.fc_dif_model,foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC,,TranscriptRecordClasses.TranscriptRecordClass,attribute,fc_dif_model,,,,transcript,4,results,,, -,,,,,,,,,,,,,, -mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph,DatasetRecordClasses.DatasetRecordClass.DS_4585d065bf,,TranscriptRecordClasses.TranscriptRecordClass,attribute,mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph,,,,gene,,results,,, -,,,,,,,,,,,,,, -pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph,DatasetRecordClasses.DatasetRecordClass.DS_c35d971a20,,TranscriptRecordClasses.TranscriptRecordClass,attribute,pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph,,,,gene,,results,,, -,,,,,,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC,,,,,,internal,,, -,,,,,,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile,searchCategory-transcriptomics-percentile,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile,,,,,,internal,,, -,,,,,,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense,searchCategory-transcriptomics-sense-antisense,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense,,,,,,internal,,, -,,,,,,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile,searchCategory-transcriptomics-percentile,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.genesByRNASeqUserDataset,searchCategory-transcriptomics-fold-change,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.genesByRNASeqUserDataset,,,,,,internal,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacyclmics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC,,,,,,internal,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,webservice,, -TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,searchCategory-transcriptomics-metacyclmics-metacycle,,TranscriptRecordClasses.TranscriptRecordClass,search,GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC,,,,,,internal,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,webservice,, -OrganismRecordClasses.OrganismRecordClass.OrganismQuestions.GenomeDataTypes,http://edamontology.org/topic_0637,organism,OrganismRecordClasses.OrganismRecordClass,search,OrganismQuestions.GenomeDataTypes,,,,,,menu,,, -,,,,,,,,,,,,,, -FileRecordClasses.FileRecordClass.data_type,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,data_type,,,,,1,results,,, -FileRecordClasses.FileRecordClass.file_format,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,file_format,,,,,2,results,,, -FileRecordClasses.FileRecordClass.filesize_text,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,filesize_text,,,,,3,results,record-internal,, -FileRecordClasses.FileRecordClass.filesize,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,filesize,,,,,3,,record-internal,download, -FileRecordClasses.FileRecordClass.organism,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,organism,,,,,4,results,,, -FileRecordClasses.FileRecordClass.build_num,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,build_num,,,,,5,results,,, -FileRecordClasses.FileRecordClass.filename,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,filename,,,,,6,results,,, -FileRecordClasses.FileRecordClass.category,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,category,,,,,1,results,,, -FileRecordClasses.FileRecordClass.file_type,http://www.w3.org/2002/07/owl#Thing,thing,FileRecordClasses.FileRecordClass,attribute,file_type,,,,,1,results,,, -,,,,,,,,,,,,,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenomicSpanByLongReadEvidence,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.GenomicSpanByLongReadEvidence,,,,,,menu,webservice,, -DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.IntronJunctionDynamicSearch,,,DynSpanRecordClasses.DynSpanRecordClass,search,SpanQuestions.IntronJunctionDynamicSearch,,,,,,menu,,, -,,,,,,,,,,,,,, -TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByLongReadEvidence,http://edamontology.org/topic_0114,Gene Structure,TranscriptRecordClasses.TranscriptRecordClass,search,InternalGeneDatasetQuestions.GenesByLongReadEvidence,,,,,,menu,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -JbrowseRecordClasses.JbrowseGeneRecordClass.link,http://edamontology.org/topic_3345,Data identity and mapping,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,link,,,,gene,,,record,, -JbrowseRecordClasses.JbrowseGeneRecordClass.product,http://edamontology.org/topic_0219,Curation and Annotation,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,product,,,,gene,,record,,, -JbrowseRecordClasses.JbrowseGeneRecordClass.organism,http://edamontology.org/topic_0637,Taxonomy,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,organism,,,,gene,,record,,, -JbrowseRecordClasses.JbrowseGeneRecordClass.name,http://edamontology.org/topic_0219,Curation and Annotation,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,name,,,,gene,,record,,, -JbrowseRecordClasses.JbrowseGeneRecordClass.orthomcl_link,http://edamontology.org/topic_3299,Evolutionary Biology,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,orthomcl_link,,,,gene,,record,,, -JbrowseRecordClasses.JbrowseGeneRecordClass.so_term_name,http://edamontology.org/topic_1775,GenomicSequenceLocationCategory,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,so_term_name,,,,gene,,record,,, -JbrowseRecordClasses.JbrowseGeneRecordClass.location_text,GenomicSequenceLocationCategory,Function analysis,JbrowseRecordClasses.JbrowseGeneRecordClass,attribute,location_text,,,,gene,,record,,, -,,,,,,,,,,,,,, -,,,,,,,,,,,,,, -JbrowseRecordClasses.JbrowseGeneRecordClass.GOTerms,http://edamontology.org/topic_1775,Function analysis,JbrowseRecordClasses.JbrowseGeneRecordClass,table,GOTerms,,,,transcript,,record,,, -JbrowseRecordClasses.Jbrowse.GeneRecordClass.GeneTranscripts,http://edamontology.org/topic_0114,Gene Structure,JbrowseRecordClasses.JbrowseGeneRecordClass,table,GeneTranscripts,,,,gene,,record,,, + recordClassName targetType name displayName shortDisplayName description geneOrTranscript displayOrder scope scope scope + eupath/eupath.owl#recordClassName eupath/eupath.owl#targetType eupath/eupath.owl#name EUPATH_0000052 eupath/eupath.owl#shortDisplayName eupath/eupath.owl#description eupath/eupath.owl#geneOrTranscript EUPATH_0000274 eupath/eupath.owl#scope eupath/eupath.owl#scope eupath/eupath.owl#scope +GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory Genomic Sequence Properties 5 +GenomicSequenceLocationCategory GenomicSequenceLocationCategory Genomic Location 6 +TextCategory TextCategory Text 1 +AlignmentsCategory http://edamontology.org/topic_0080 Sequence Analysis AlignmentsCategory BLAT and Blast Alignments +CodingPotentialCategory http://edamontology.org/topic_0080 Sequence Analysis CodingPotentialCategory Coding Potential +InterProDomainsCategory http://edamontology.org/topic_0123 Protein properties InterProDomainsCategory InterPro Domains +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByCompoundID http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByCompoundID menu webservice + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByEcReaction http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByEcReaction menu webservice +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChange http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChange menu webservice +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByGeneID http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByGeneID +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularFormula http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByMolecularFormula menu webservice +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByMolecularWeight http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByMolecularWeight menu webservice +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathway http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPathway menu webservice +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPathwayID http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPathwayID +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByText http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByText menu webservice +EstRecordClasses.EstRecordClass.EstQuestions.EstBySourceId http://edamontology.org/topic_0219 annot and curation EstRecordClasses.EstRecordClass search EstQuestions.EstBySourceId menu webservice +EstRecordClasses.EstRecordClass.EstQuestions.ESTsByGeneIDs http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.ESTsByGeneIDs menu webservice +EstRecordClasses.EstRecordClass.EstQuestions.EstsByLibrary http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsByLibrary menu webservice +EstRecordClasses.EstRecordClass.EstQuestions.EstsByLocation http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsByLocation menu webservice +EstRecordClasses.EstRecordClass.EstQuestions.EstsBySimilarity http://edamontology.org/topic_0080 Sequence Analysis EstRecordClasses.EstRecordClass search EstQuestions.EstsBySimilarity webservice +EstRecordClasses.EstRecordClass.EstQuestions.EstsByMultiBlast http://edamontology.org/topic_0080 Sequence Analysis EstRecordClasses.EstRecordClass search EstQuestions.EstsByMultiBlast menu webservice +EstRecordClasses.EstRecordClass.EstQuestions.EstsByWeightFilter http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsByWeightFilter +EstRecordClasses.EstRecordClass.EstQuestions.EstsWithGeneOverlap http://edamontology.org/topic_3308 Transcriptomics EstRecordClasses.EstRecordClass search EstQuestions.EstsWithGeneOverlap menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions. +GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC searchCategory-transcriptomics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMicroarrayMetaCycleagamPEST_microarrayExpression_GSE22585_circadian_rhythm_RSRC internal webservice + +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC searchCategory-transcriptomics-iterativeWGCNA TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqWGCNApfal3D7_Lee_Gambian_rnaSeq_RSRC internal webservice + +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRC internal webservice + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Llinas_RSRC internal webservice + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangemetaboliteProfiles_LlinasMetabolites_RSRC internal webservice + + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Llinas_RSRC internal webservice + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilemetaboliteProfiles_LlinasMetabolites_RSRC internal webservice + + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_PurineStarvation_RSRC internal webservice + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC searchCategory-metabolomics-fold-change CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByFoldChangecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC internal webservice + + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_PurineStarvation_RSRC internal webservice + +CompoundRecordClasses.CompoundRecordClass.CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC searchCategory-metabolomics-percentile CompoundRecordClasses.CompoundRecordClass search CompoundQuestions.CompoundsByPercentilecompoundMassSpec_Barrett_AmphotericinB_Resistant_RSRC internal webservice + +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCoexpression searchCategory-coexpression TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCoexpression internal webservice + +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCandidaCoexpression searchCategory-coexpression TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCandidaCoexpression internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNeurosporaCoexpression searchCategory-coexpression TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByNeurosporaCoexpression internal webservice + +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile searchCategory-transcriptomics-percentile TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMicroarraypfal3D7_microarrayExpression_Derisi_TimeSeries_RSRCPercentile internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByLocusTag http://edamontology.org/topic_0219 annot and curation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GeneByLocusTag menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneBySingleLocusTag http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GeneBySingleLocusTag webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GeneByTranscriptID http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GeneByTranscriptID webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByBindingSiteFeature http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByBindingSiteFeature menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCentromereProximity GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCentromereProximity menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEcNumber http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEcNumber menu webservice +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByFunctionalGeneList http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByFunctionalGeneList menu +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesBySubcellularLocalization http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesBySubcellularLocalization menu +##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySubcellularGeneListcparIowaII_subcellular_localization_Striepen_Hyperlopit_RSRC menu webservice +##TMP_TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC http://edamontology.org/topic_1775 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByFunctionalGeneListcalbSC5314_functional_data_Omeara_2020_CalCEN_UMAP_RSRC menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExonCount http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByExonCount webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByParalogCount http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByParalogCount menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByExportPrediction http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByExportPrediction menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneType http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGeneType webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIntronJunctions http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByIntronJunctions menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneModelChars http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGeneModelChars menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGoTerm http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGoTerm menu webservice +## TEMPLATE_ANCHOR geneImageGoTermOntology +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_Magnaporthe_Pheno_RSRC webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_fgraPH-1_phenotype_Fusarium_Pheno_RSRC webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_mory70-15_phenotype_Magnaporthe_Pheno_RSRC webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByHighThroughputPhenotyping searchCategory-phenotype-quantitative Phenomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByHighThroughputPhenotyping webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByInterproDomain http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByInterproDomain menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIsoelectricPoint http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByIsoelectricPoint menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByLocation menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMassSpec http://edamontology.org/topic_0121 Proteomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMassSpec menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPTM http://edamontology.org/topic_0121 Proteomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPTM menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathwayHagai http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMetabolicPathwayHagai menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMetabolicPathway http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMetabolicPathway menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByReactionCompounds http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByReactionCompounds menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMolecularWeight http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMolecularWeight menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMotifSearch http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMotifSearch menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNgsSnps http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByNgsSnps menu webservice +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumber http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCopyNumber menu webservice +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCopyNumberComparison http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCopyNumberComparison menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByNonnuclearLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByNonnuclearLocation menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOldAnnotation http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByOldAnnotation +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByOrthologPattern http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByOrthologPattern menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhyleticProfile http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhyleticProfile menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPdbSimilarity http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPdbSimilarity menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithAlphafold http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithAlphafold menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySingleCell http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySingleCell menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFungiProteinProteinInteraction searchCategory-interactions TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByFungiProteinProteinInteraction internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPlasmoProteinProteinInteraction searchCategory-interactions TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPlasmoProteinProteinInteraction internal webservice +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_tgonGT1_crisprPhenotype_CrisprScreen_RSRC menu webservice +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRodentMalariaPhenotype http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRodentMalariaPhenotype +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySecondaryStructure http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySecondaryStructure menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySimilarity http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySimilarity webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByMultiBlast http://edamontology.org/topic_0080 Sequence Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByMultiBlast menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySnps http://edamontology.org/topic_0199 Genetic Variation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySnps menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySubcellularLocalization http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySubcellularLocalization menu webservice +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByFunctionalInteraction TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByFunctionalInteraction menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTaxon http://edamontology.org/topic_0637 Taxonomy TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByTaxon menu webservice +GeneRecordClasses.GeneRecordClass.GeneQuestions.GenesByTaxonGene http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass search GeneQuestions.GenesByTaxonGene webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTelomereProximity GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByTelomereProximity menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByText TextCategory TextCategory TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByText menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByTransmembraneDomains http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByTransmembraneDomains menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesOrthologousToAGivenGene http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesOrthologousToAGivenGene webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithEpitopes http://edamontology.org/topic_0804 immunoproteins,genes,antigens TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithEpitopes menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithSignalPeptide http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithSignalPeptide menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithStructurePrediction http://edamontology.org/topic_0081 Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithStructurePrediction menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUpdatedAnnotation http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithUpdatedAnnotation menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithUserComments http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithUserComments menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesWithApolloAnnotation http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesWithApolloAnnotation internal webservice +##TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.InternalGenesByEcNumber TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.InternalGenesByEcNumber +TranscriptAttributes.MetaRandomIntAttr RandomIntAttr TranscriptRecordClasses.TranscriptRecordClass attributeMetaQuery MetaRandomIntAttr Random Integer gene results download +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceBySourceId http://edamontology.org/topic_0219 annot and curation SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequenceBySourceId menu webservice +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequenceByWeightFilter SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequenceByWeightFilter +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesBySimilarity http://edamontology.org/topic_0080 Sequence Analysis SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesBySimilarity webservice +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByMultiBlast http://edamontology.org/topic_0080 Sequence Analysis SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesByMultiBlast menu webservice +SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByTaxon http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesByTaxon menu webservice +##SequenceRecordClasses.SequenceRecordClass.GenomicSequenceQuestions.SequencesByPloidy http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass search GenomicSequenceQuestions.SequencesByPloidy menu webservice +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByProteinArray http://edamontology.org/topic_0804 Immunology TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByProteinArray menu +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByMicroarrayEvidence http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByMicroarrayEvidence menu +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByQuantitativeProteomics http://edamontology.org/topic_0121 Proteomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByQuantitativeProteomics menu +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByPhenotypeEvidence http://edamontology.org/topic_3298 Phenotype TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByPhenotypeEvidence menu +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRNASeqEvidence http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByRNASeqEvidence menu + +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByY2hInteractions http://edamontology.org/topic_0602 interactions and pathways TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByY2hInteractions menu + + + +CompoundRecordClasses.CompoundRecordClass.InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass search InternalCompoundDatasetQuestions.CompoundsByMetaboliteEvidence menu + + +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByRTPCREvidence http://edamontology.org/topic_3308 Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByRTPCREvidence menu +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByChIPchip http://edamontology.org/topic_3173 Epigenomics TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByChIPchip menu +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByCompoundsTransform Metabolomics TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByCompoundsTransform +##TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMassSpecEvidence Proteomics TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByMassSpecEvidence +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByMissingTranscriptsTransform TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByMissingTranscriptsTransform +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByOrthologs Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByOrthologs +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByPathwaysTransform TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByPathwaysTransform +TranscriptRecordClasses.TranscriptRecordClass.InternalQuestions.GenesByProteinStructure Structure Analysis TranscriptRecordClasses.TranscriptRecordClass search InternalQuestions.GenesByProteinStructure +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByCountry http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByCountry menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByHost http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByHost menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByPopsetId http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByPopsetId menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByIsolationSource http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByIsolationSource menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByProduct http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByProduct menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByStudy http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByStudy +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetByTaxon http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetByTaxon menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsBySimilarity http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetsBySimilarity webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByMultiBlast http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetsByMultiBlast menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetIsolatesByText http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetIsolatesByText menu webservice +PopsetRecordClasses.PopsetRecordClass.PopsetQuestions.PopsetsByWeightFilter http://edamontology.org/topic_0199 Genetic Variation PopsetRecordClasses.PopsetRecordClass search PopsetQuestions.PopsetsByWeightFilter +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfByOrfId http://edamontology.org/topic_0219 annot and curation OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfByOrfId menu webservice +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsByLocation menu webservice +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByMotifSearch http://edamontology.org/topic_0080 Sequence Analysis OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsByMotifSearch menu webservice +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsBySimilarity http://edamontology.org/topic_0080 Sequence Analysis OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsBySimilarity menu webservice +OrfRecordClasses.OrfRecordClass.OrfQuestions.OrfsByWeightFilter http://edamontology.org/topic_0219 annot and curation OrfRecordClasses.OrfRecordClass search OrfQuestions.OrfsByWeightFilter +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompoundIds http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByCompoundIds +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByCompounds http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByCompounds menu webservice +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneIds http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByGeneIds +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByGeneList http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByGeneList menu webservice +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByIdentifierList http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByIdentifierList menu webservice +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByPathwayID http://edamontology.org/topic_0602 interactions and pathways PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByPathwayID menu webservice +PathwayRecordClasses.PathwayRecordClass.PathwayQuestions.PathwaysByWeightFilter PathwayRecordClasses.PathwayRecordClass search PathwayQuestions.PathwaysByWeightFilter +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpBySourceId http://edamontology.org/topic_0219 annot and curation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpBySourceId 1 menu webservice +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByGeneId http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByGeneId 5 menu webservice +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByIsolatePattern http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByIsolatePattern 4 menu webservice +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByLocation 2 menu webservice +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByStrain http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByStrain 3 menu webservice +SnpChipRecordClasses.SnpChipRecordClass.SnpChipQuestions.SnpsByWeightFilter http://edamontology.org/topic_0199 Genetic variation SnpChipRecordClasses.SnpChipRecordClass search SnpChipQuestions.SnpsByWeightFilter +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpBySourceId http://edamontology.org/topic_0219 annot and curation SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpBySourceId 1 menu webservice +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByGeneIds http://edamontology.org/topic_0199 SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByGeneIds 5 menu webservice +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByIsolateGroup http://edamontology.org/topic_0199 SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByIsolateGroup 3 menu webservice +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByLocation 2 menu webservice +SnpRecordClasses.SnpRecordClass.SnpQuestions.NgsSnpsByTwoIsolateGroups http://edamontology.org/topic_0199 Genetic variation SnpRecordClasses.SnpRecordClass search SnpQuestions.NgsSnpsByTwoIsolateGroups 4 menu webservice +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByEQTLtoGenes DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansByEQTLtoGenes menu webservice +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByMotifSearch DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansByMotifSearch menu webservice +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySourceId DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansBySourceId menu webservice +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansBySpanLogic +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.DynSpansByWeightFilter DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.DynSpansByWeightFilter +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenesBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.GenesBySpanLogic +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.OrfsBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.OrfsBySpanLogic +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.SnpsBySpanLogic +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.SnpsChipsBySpanLogic DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.SnpsChipsBySpanLogic +SampleRecordClasses.SampleRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SampleRecordClasses.SampleRecordClass attribute record_overview record-internal +SampleRecordClasses.SampleRecordClass.Characteristics http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table Characteristics 3 record download +SampleRecordClasses.SampleRecordClass.Protocols http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table Protocols 2 record download +SampleRecordClasses.SampleRecordClass.ProcessedSample http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table ProcessedSample 4 record download +SampleRecordClasses.SampleRecordClass.Datasets http://edamontology.org/topic_0219 annotation and curation SampleRecordClasses.SampleRecordClass table Datasets 1 record download +RflpIsolateRecordClasses.RflpIsolateRecordClass.Datasets http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table Datasets 1 record download +RflpIsolateRecordClasses.RflpIsolateRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation RflpIsolateRecordClasses.RflpIsolateRecordClass attribute record_overview record-internal +RflpIsolateRecordClasses.RflpIsolateRecordClass.Characteristics http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table Characteristics 2 record download +RflpIsolateRecordClasses.RflpIsolateRecordClass.Protocols http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table Protocols 2 record download +RflpIsolateRecordClasses.RflpIsolateRecordClass.ProcessedSample http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table ProcessedSample 3 record download +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpGenotype http://edamontology.org/topic_0219 annotation and curation RflpIsolateRecordClasses.RflpIsolateRecordClass table RflpGenotype 3 record download +GeneRecordClasses.GeneRecordClass.Sequences http://edamontology.org/data_2044 sequences GeneRecordClasses.GeneRecordClass table Sequences gene record +GeneRecordClasses.GeneRecordClass.GeneTranscripts http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass table GeneTranscripts gene record download +GeneRecordClasses.GeneRecordClass.CellularLocalization http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table CellularLocalization gene record download +GeneRecordClasses.GeneRecordClass.ECNumbers http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table ECNumbers transcript record download +GeneRecordClasses.GeneRecordClass.SubcellularLocationGeneLists http://edamontology.org/topic_0140 Subcellular Localization GeneRecordClasses.GeneRecordClass table SubcellularLocationGeneLists transcript record +GeneRecordClasses.GeneRecordClass.FunctionPredictionGeneLists http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table FunctionPredictionGeneLists transcript record +GeneRecordClasses.GeneRecordClass.ECNumbersInferred http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table ECNumbersInferred transcript record download +GeneRecordClasses.GeneRecordClass.ProteinSequence http://edamontology.org/data_2976 Protin Sequence GeneRecordClasses.GeneRecordClass table ProteinSequence transcript download record + +GeneRecordClasses.GeneRecordClass.Seqedits http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass table Seqedits gene record +GeneRecordClasses.GeneRecordClass.Antibody http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table Antibody gene record download +GeneRecordClasses.GeneRecordClass.CommunityExpComments http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table CommunityExpComments gene record download +GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationDatasets http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table EdaCellularLocalizationDatasets gene record +GeneRecordClasses.GeneRecordClass.EdaCellularLocalizationGraphsDataTable http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table EdaCellularLocalizationGraphsDataTable gene record-internal download +GeneRecordClasses.GeneRecordClass.Products http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Products transcript record download +GeneRecordClasses.GeneRecordClass.SNPsAlignment http://edamontology.org/topic_0199 Genetic Variation GeneRecordClasses.GeneRecordClass table SNPsAlignment gene record +GeneRecordClasses.GeneRecordClass.MercatorTable http://edamontology.org/topic_3299 EvoBiol Comparison GeneRecordClasses.GeneRecordClass table MercatorTable gene record + +GeneRecordClasses.GeneRecordClass.Apollo_link http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass table Apollo_link gene record +GeneRecordClasses.GeneRecordClass.Apollo_link http://edamontology.org/topic_0080 Gene Models GeneRecordClasses.GeneRecordClass table Apollo_link gene record + +GeneRecordClasses.GeneRecordClass.PhenotypeScore http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeScore gene record +GeneRecordClasses.GeneRecordClass.PhenotypeGraphsDataTable http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeGraphsDataTable gene record-internal download +GeneRecordClasses.GeneRecordClass.specialJbrowseUrl http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass attribute specialJbrowseUrl 1 gene record-internal +GeneRecordClasses.GeneRecordClass.ExpressionGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ExpressionGraphsDataTable gene record-internal +GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table UserDatasetsTranscriptomicsGraphsDataTable gene record-internal +GeneRecordClasses.GeneRecordClass.FacetMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FacetMetadata gene record-internal +GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FungiVBOrgLinkoutsTable gene record-internal + +GeneRecordClasses.GeneRecordClass.ContXAxisMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ContXAxisMetadata gene record-internal +GeneRecordClasses.GeneRecordClass.ai_expression http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute ai_expression gene 2 record +GeneRecordClasses.GeneRecordClass.TranscriptionSummary http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table TranscriptionSummary gene 2 record +GeneRecordClasses.GeneRecordClass.ExpressionGraphs http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ExpressionGraphs gene 3 record +GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphs http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table UserDatasetsTranscriptomicsGraphs gene 4 record +GeneRecordClasses.GeneRecordClass.SpliceSites http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table SpliceSites gene 2 record download +GeneRecordClasses.GeneRecordClass.PolyASites http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table PolyASites gene 3 record download +GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC_PhenotypeImages gene 3 record download +GeneRecordClasses.GeneRecordClass.afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table afumA1163_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages gene 3 record download +GeneRecordClasses.GeneRecordClass.afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table afumAf293_TF_KO_Image_NAFeaturePhenotypeImage_RSRC_PhenotypeImages gene 3 record download +GeneRecordClasses.GeneRecordClass.pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pfal3D7_phenotype_pB_mutagenesis_MIS_MFS_RSRC gene 3 download +GeneRecordClasses.GeneRecordClass.pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pberANKA_phenotype_Bushnell_functional_profiling_RSRC_Phenotype gene 3 record download +GeneRecordClasses.GeneRecordClass.pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pknoH_phenotype_piggyBac_mutagenesis_HME_MIS_OIS_RSRC gene 3 download +GeneRecordClasses.GeneRecordClass.pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table pknoA1H1_phenotype_piggyBac_mutagenesis_MIS_MFS_RSRC gene 3 download +GeneRecordClasses.GeneRecordClass.ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table ncraOR74A_phenotype_knockout_mutants_RSRC_Phenotype gene 3 record download +GeneRecordClasses.GeneRecordClass.PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC_Phenotype gene 3 record download +GeneRecordClasses.GeneRecordClass.CGD_CuratedPhenotypes http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table CGD_CuratedPhenotypes gene 3 record download +GeneRecordClasses.GeneRecordClass.ProteinExpressionGraphs http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table ProteinExpressionGraphs gene record +GeneRecordClasses.GeneRecordClass.HostResponseGraphs http://edamontology.org/topic_0804 Immunology GeneRecordClasses.GeneRecordClass table HostResponseGraphs gene record +GeneRecordClasses.GeneRecordClass.EdaPhenotypeDatasets http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table EdaPhenotypeDatasets gene record +GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphs http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeScoreGraphs gene record +GeneRecordClasses.GeneRecordClass.eQTLPhenotypeGraphs http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table eQTLPhenotypeGraphs gene record +GeneRecordClasses.GeneRecordClass.PhenotypeGraphs http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeGraphs gene record +GeneRecordClasses.GeneRecordClass.PhenotypeScoreGraphsDataTable http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeScoreGraphsDataTable gene record-internal +GeneRecordClasses.GeneRecordClass.EdaPhenotypeGraphsDataTable http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table EdaPhenotypeGraphsDataTable gene record-internal download +GeneRecordClasses.GeneRecordClass.HostResponseGraphsDataTable http://edamontology.org/topic_0804 Immunology GeneRecordClasses.GeneRecordClass table HostResponseGraphsDataTable gene record-internal download +GeneRecordClasses.GeneRecordClass.RodMalPhenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table RodMalPhenotype transcript record download +GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table Plasmo_eQTL_Table transcript record download +GeneRecordClasses.GeneRecordClass.Phenotype http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table Phenotype transcript record download +GeneRecordClasses.GeneRecordClass.PhenotypeMagnaporthe http://edamontology.org/topic_3298 phenotype GeneRecordClasses.GeneRecordClass table PhenotypeMagnaporthe transcript record download +GeneRecordClasses.GeneRecordClass.InterPro http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table InterPro transcript record download +GeneRecordClasses.GeneRecordClass.WolfPsortForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table WolfPsortForm transcript record +GeneRecordClasses.GeneRecordClass.BlastpForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table BlastpForm transcript record +GeneRecordClasses.GeneRecordClass.InterProForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table InterProForm transcript record +GeneRecordClasses.GeneRecordClass.MendelGPIForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table MendelGPIForm transcript record +GeneRecordClasses.GeneRecordClass.FungalGPIForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table FungalGPIForm transcript record +GeneRecordClasses.GeneRecordClass.StringDBForm http://edamontology.org/topic_0123 prot prop GeneRecordClasses.GeneRecordClass table StringDBForm transcript record +GeneRecordClasses.GeneRecordClass.hasAlphaFold http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass attribute hasAlphaFold gene record-internal +GeneRecordClasses.GeneRecordClass.alphafold_url http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass attribute alphafold_url gene record +GeneRecordClasses.GeneRecordClass.AlphaFoldLinkouts http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table AlphaFoldLinkouts gene record download +GeneRecordClasses.GeneRecordClass.TMHMM http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table TMHMM transcript download +GeneRecordClasses.GeneRecordClass.LowComplexity http://edamontology.org/topic_0160 Sequence sites, features and motifs GeneRecordClasses.GeneRecordClass table LowComplexity transcript download +GeneRecordClasses.GeneRecordClass.GeneModelDump http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass table GeneModelDump transcript download +GeneRecordClasses.GeneRecordClass.SignalP http://edamontology.org/topic_0140 Protein targeting and localization GeneRecordClasses.GeneRecordClass table SignalP transcript download +GeneRecordClasses.GeneRecordClass.GeneLocation GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass table GeneLocation transcript record download +GeneRecordClasses.GeneRecordClass.Plasmo_eQTL_Table http://edamontology.org/topic_3298 Phenomics GeneRecordClasses.GeneRecordClass table Plasmo_eQTL_Table gene record download +GeneRecordClasses.GeneRecordClass.UserComments http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table UserComments gene record download +GeneRecordClasses.GeneRecordClass.Notes http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Notes gene record download +GeneRecordClasses.GeneRecordClass.external_db_name http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute external_db_name gene record-internal +GeneRecordClasses.GeneRecordClass.external_db_version http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute external_db_version gene record-internal +GeneRecordClasses.GeneRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute record_overview gene +GeneRecordClasses.GeneRecordClass.EcNumber http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table EcNumber transcript record +GeneRecordClasses.GeneRecordClass.MassSpec http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table MassSpec transcript record +GeneRecordClasses.GeneRecordClass.MassSpecDownload http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table MassSpecDownload transcript download +GeneRecordClasses.GeneRecordClass.MassSpecMod http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table MassSpecMod transcript record download +GeneRecordClasses.GeneRecordClass.GOSlim http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table GOSlim transcript record download +GeneRecordClasses.GeneRecordClass.GOTerms http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table GOTerms transcript record download +GeneRecordClasses.GeneRecordClass.Y2hInteractions http://edamontology.org/topic_0128 Protein Interactions GeneRecordClasses.GeneRecordClass table Y2hInteractions gene record download +GeneRecordClasses.GeneRecordClass.Orthologs http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass table Orthologs gene record +GeneRecordClasses.GeneRecordClass.OrthologsLite http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass table OrthologsLite gene +GeneRecordClasses.GeneRecordClass.MetabolicPathwaysMPMP http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MetabolicPathwaysMPMP transcript 1 record download +GeneRecordClasses.GeneRecordClass.MetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MetabolicPathways transcript 2 record download +GeneRecordClasses.GeneRecordClass.Alias http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table Alias transcript record download +GeneRecordClasses.GeneRecordClass.strain http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute strain gene record-internal download +GeneRecordClasses.GeneRecordClass.PubMed http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass table PubMed transcript record download +GeneRecordClasses.GeneRecordClass.Cellxgene http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table Cellxgene transcript record +GeneRecordClasses.GeneRecordClass.GeneLinkouts http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneLinkouts transcript record download +GeneRecordClasses.GeneRecordClass.3dPreds http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table 3dPreds transcript 2 record download +GeneRecordClasses.GeneRecordClass.PdbSimilarities http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table PdbSimilarities transcript 1 record download +GeneRecordClasses.GeneRecordClass.Ssgcid http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass table Ssgcid transcript 3 record +GeneRecordClasses.GeneRecordClass.Epitopes http://edamontology.org/topic_0804 immunoproteins,genes,antigens GeneRecordClasses.GeneRecordClass table Epitopes transcript record download +GeneRecordClasses.GeneRecordClass.Product http://edamontology.org/topic_0123 Protein properties GeneRecordClasses.GeneRecordClass table Product transcript +GeneRecordClasses.GeneRecordClass.GeneName http://edamontology.org/data_2299 Gene name GeneRecordClasses.GeneRecordClass table GeneName transcript +GeneRecordClasses.GeneRecordClass.ProteinExpressionPBrowse http://edamontology.org/topic_0121 Proteomics GeneRecordClasses.GeneRecordClass table ProteinExpressionPBrowse transcript record +GeneRecordClasses.GeneRecordClass.ProteinProperties http://edamontology.org/topic_0123 Protein properties GeneRecordClasses.GeneRecordClass table ProteinProperties transcript download record download +GeneRecordClasses.GeneRecordClass.AllProducts http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table AllProducts transcript 2 results record download +GeneRecordClasses.GeneRecordClass.ApolloProducts http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass table ApolloProducts transcript 3 results record +GeneRecordClasses.GeneRecordClass.GeneId http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneId gene Record-internal +GeneRecordClasses.GeneRecordClass.GeneGffAliases http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneGffAliases gene +GeneRecordClasses.GeneRecordClass.GeneGffGoTerms http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table GeneGffGoTerms gene +GeneRecordClasses.GeneRecordClass.GeneGffDbxrefs http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass table GeneGffDbxrefs gene record +GeneRecordClasses.GeneRecordClass.GenBankLocations GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass table GenBankLocations transcript download record +GeneRecordClasses.GeneRecordClass.CompoundsMetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table CompoundsMetabolicPathways transcript 3 record download +GeneRecordClasses.GeneRecordClass.MobileElements http://edamontology.org/topic_0798 Metabolic Pathways GeneRecordClasses.GeneRecordClass table MobileElements transcript 3 record download +GeneRecordClasses.GeneRecordClass.MetaTable http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass table MetaTable gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMis http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pfal3D7PiggyBacMutMis gene results download +TranscriptRecordClasses.TranscriptRecordClass.pfal3D7PiggyBacMutMfs http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pfal3D7PiggyBacMutMfs gene results download + +TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutHMS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoHPiggyBacMutHMS gene results download +TranscriptRecordClasses.TranscriptRecordClass.pknoHPiggyBacMutOIS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoHPiggyBacMutOIS gene results download +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMIS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMIS gene results download +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMISplus http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMISplus gene results download +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMFS http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMFS gene results download +TranscriptRecordClasses.TranscriptRecordClass.pknoA1H1PiggyBacMutMutability http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute pknoA1H1PiggyBacMutMutability gene results download +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncPE http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncPE gene results download +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLiver http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncLiver gene results download +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncLung http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncLung gene results download +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprFuncSpleen http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprFuncSpleen gene results download +TranscriptRecordClasses.TranscriptRecordClass.tgonGt1CrisprMeanPhenotype http://edamontology.org/topic_3298 Phenomics TranscriptRecordClasses.TranscriptRecordClass attribute tgonGt1CrisprMeanPhenotype gene results download +TranscriptRecordClasses.TranscriptRecordClass.Publications http://edamontology.org/topic_3068 Literature and Reference TranscriptRecordClasses.TranscriptRecordClass attribute Publications transcript +TranscriptRecordClasses.TranscriptRecordClass.dic_img_uri http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute dic_img_uri gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.gfp_img_uri http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute gfp_img_uri gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.is_visible http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute is_visible gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.has_image http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute has_image gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.dbp_image_note http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute dbp_image_note gene results download +TranscriptRecordClasses.TranscriptRecordClass.dbp_image http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute dbp_image gene results +TranscriptRecordClasses.TranscriptRecordClass.overview http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute overview gene +TranscriptRecordClasses.TranscriptRecordClass.snpoverview http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute snpoverview gene +TranscriptRecordClasses.TranscriptRecordClass.gbrowseLink http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gbrowseLink gene +GeneRecordClasses.GeneRecordClass.jbrowseLink http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute jbrowseLink gene record-internal +GeneRecordClasses.GeneRecordClass.pbrowseLink http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute pbrowseLink gene record-internal +GeneRecordClasses.GeneRecordClass.geneJbrowseUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute geneJbrowseUrl gene record-internal +GeneRecordClasses.GeneRecordClass.geneJbrowseFullUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute geneJbrowseFullUrl gene record-internal +GeneRecordClasses.GeneRecordClass.geneApolloFullUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute geneApolloFullUrl gene record-internal +GeneRecordClasses.GeneRecordClass.apolloIdCheck http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute apolloIdCheck gene record-internal +GeneRecordClasses.GeneRecordClass.snpsJbrowseUrl http://edamontology.org/topic_2885 DNAPolymorhph GeneRecordClasses.GeneRecordClass attribute snpsJbrowseUrl gene record-internal +GeneRecordClasses.GeneRecordClass.snpsJbrowseFullUrl http://edamontology.org/topic_2885 DNAPolymorhph GeneRecordClasses.GeneRecordClass attribute snpsJbrowseFullUrl gene record-internal +GeneRecordClasses.GeneRecordClass.blatJbrowseUrl http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass attribute blatJbrowseUrl gene record-internal +GeneRecordClasses.GeneRecordClass.blatJbrowseFullUrl http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass attribute blatJbrowseFullUrl gene record-internal +GeneRecordClasses.GeneRecordClass.syntenyJbrowseUrl http://edamontology.org/topic_3299 orthologs and synteny GeneRecordClasses.GeneRecordClass attribute syntenyJbrowseUrl gene record-internal +GeneRecordClasses.GeneRecordClass.syntenyJbrowseFullUrl http://edamontology.org/topic_3299 orthologs and synteny GeneRecordClasses.GeneRecordClass attribute syntenyJbrowseFullUrl gene record-internal +GeneRecordClasses.GeneRecordClass.microarray_dataset_count http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute microarray_dataset_count gene 1 record +GeneRecordClasses.GeneRecordClass.rnaseq_dataset_count http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute rnaseq_dataset_count gene 1 record +GeneRecordClasses.GeneRecordClass.CoverageJbrowseUrl http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute CoverageJbrowseUrl gene record-internal +GeneRecordClasses.GeneRecordClass.CoverageJbrowseIntUrl http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute CoverageJbrowseIntUrl gene record-internal +GeneRecordClasses.GeneRecordClass.GeneModelGbrowseUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute GeneModelGbrowseUrl gene record +GeneRecordClasses.GeneRecordClass.GeneApolloGbrowseUrl http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute GeneModelApolloUrl gene record +GeneRecordClasses.GeneRecordClass.BlatAlignmentsGbrowseUrl http://edamontology.org/topic_0080 Sequence Analysis GeneRecordClasses.GeneRecordClass attribute BlatAlignmentsGbrowseUrl gene record +GeneRecordClasses.GeneRecordClass.SyntenyGbrowseUrl http://edamontology.org/topic_3299 orthologs and synteny GeneRecordClasses.GeneRecordClass attribute SyntenyGbrowseUrl gene record +GeneRecordClasses.GeneRecordClass.SnpsGbrowseUrl http://edamontology.org/topic_2885 DNAPolymorhph GeneRecordClasses.GeneRecordClass attribute SnpsGbrowseUrl gene record +GeneRecordClasses.GeneRecordClass.protein_expression_gtracks http://www.w3.org/2002/07/owl#Thing thing GeneRecordClasses.GeneRecordClass attribute protein_expression_gtracks gene record-internal +GeneRecordClasses.GeneRecordClass.ProteomicsPbrowseUrl http://www.w3.org/2002/07/owl#Thing thing GeneRecordClasses.GeneRecordClass attribute ProteomicsPbrowseUrl gene record-internal +GeneRecordClasses.GeneRecordClass.FeaturesPbrowseUrl http://www.w3.org/2002/07/owl#Thing thing GeneRecordClasses.GeneRecordClass attribute FeaturesPbrowseUrl gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.genus_species http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute genus_species gene record-internal +GeneRecordClasses.GeneRecordClass.genus_species http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute genus_species gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.gene_context_start http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_context_start gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.gene_context_end http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_context_end gene record-internal +GeneRecordClasses.GeneRecordClass.context_start http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute context_start gene record-internal +GeneRecordClasses.GeneRecordClass.context_end http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute context_end gene record-internal +GeneRecordClasses.GeneRecordClass.start_min http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute start_min gene record-internal +GeneRecordClasses.GeneRecordClass.end_max http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute end_max gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.gene_start_min http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_start_min gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.gene_end_max http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_end_max gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.protein_gtracks http://edamontology.org/topic_0160 Sequence sites, features and motifs TranscriptRecordClasses.TranscriptRecordClass attribute protein_gtracks transcript record +TranscriptRecordClasses.TranscriptRecordClass.JBrowse http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute JBrowse gene results record +TranscriptRecordClasses.TranscriptRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute source_id gene record +GeneRecordClasses.GeneRecordClass.source_id http://edamontology.org/topic_0219 annot and cur GeneRecordClasses.GeneRecordClass attribute source_id gene record-internal download +GeneRecordClasses.GeneRecordClass.sequence_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute sequence_id gene results record-internal download +TranscriptRecordClasses.TranscriptRecordClass.sequence_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute sequence_id gene results download +GeneRecordClasses.GeneRecordClass.chromosome GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute chromosome gene results record-internal download +TranscriptRecordClasses.TranscriptRecordClass.chromosome GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute chromosome gene results download +TranscriptRecordClasses.TranscriptRecordClass.organism http://edamontology.org/topic_0637 Taxonomy TranscriptRecordClasses.TranscriptRecordClass attribute organism gene results download +GeneRecordClasses.GeneRecordClass.organism http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass attribute organism gene results +GeneRecordClasses.GeneRecordClass.Taxonomy http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass table Taxonomy gene record +GeneRecordClasses.GeneRecordClass.ds_annotation_version http://edamontology.org/topic_0219 annotation GeneRecordClasses.GeneRecordClass attribute ds_annotation_version 1 record +GeneRecordClasses.GeneRecordClass.attribution_partial http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass attribute attribution_partial record-internal +GeneRecordClasses.GeneRecordClass.dataset_id http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass attribute dataset_id record-internal +GeneRecordClasses.GeneRecordClass.attribution http://edamontology.org/topic_3068 Literature and Reference GeneRecordClasses.GeneRecordClass attribute attribution record-internal + +TranscriptRecordClasses.TranscriptRecordClass.gene_source_id http://edamontology.org/topic_0219 annot and cur TranscriptRecordClasses.TranscriptRecordClass attribute gene_source_id gene record download +TranscriptRecordClasses.TranscriptRecordClass.gene_product http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute gene_product gene results record download +GeneRecordClasses.GeneRecordClass.product http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute product gene results record-internal download +TranscriptRecordClasses.TranscriptRecordClass.gene_type http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_type gene results record download +GeneRecordClasses.GeneRecordClass.gene_type http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute gene_type gene record-internal download +GeneRecordClasses.GeneRecordClass.type_with_pseudo http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute type_with_pseudo gene results record-internal download +GeneRecordClasses.GeneRecordClass.gene_ebi_biotype http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute gene_ebi_biotype gene record-internal +GeneRecordClasses.GeneRecordClass.location_text http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute location_text gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute location_text transcript results download +TranscriptRecordClasses.TranscriptRecordClass.gene_location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute gene_location_text gene results download +GeneRecordClasses.GeneRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute location_text gene record-internal +GeneRecordClasses.GeneRecordClass.strand_plus_minus GenomicSequenceLocationCategory GenomicSequenceLocationCategory GeneRecordClasses.GeneRecordClass attribute strand_plus_minus gene record-internal +GeneRecordClasses.GeneRecordClass.genome_status http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute genome_status gene record-internal +GeneRecordClasses.GeneRecordClass.data_release_policy http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute data_release_policy gene record-internal +GeneRecordClasses.GeneRecordClass.num_user_comments http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute num_user_comments gene record-internal +GeneRecordClasses.GeneRecordClass.show_apollo http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute show_apollo gene record-internal +GeneRecordClasses.GeneRecordClass.special_link http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute special_link gene record-internal +GeneRecordClasses.GeneRecordClass.user_comment_link_url http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute user_comment_link_url gene record-internal +GeneRecordClasses.GeneRecordClass.apollo_ident http://www.w3.org/2002/07/owl#Thing GeneSummary GeneRecordClasses.GeneRecordClass attribute apollo_ident gene record-internal +GeneRecordClasses.GeneRecordClass.organism_full http://www.w3.org/2002/07/owl#Thing MetaTableKey GeneRecordClasses.GeneRecordClass attribute organism_full gene record-internal download +GeneRecordClasses.GeneRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy GeneRecordClasses.GeneRecordClass attribute organism_text gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.gene_name http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute gene_name gene results record download +TranscriptRecordClasses.TranscriptRecordClass.gene_exon_count http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_exon_count gene results record download +GeneRecordClasses.GeneRecordClass.name http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute name gene 1 results record download +GeneRecordClasses.GeneRecordClass.exon_count http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute exon_count gene 1 results record download +GeneRecordClasses.GeneRecordClass.apolloHelp http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute apolloHelp gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.is_pseudo http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute is_pseudo transcript results record download +GeneRecordClasses.GeneRecordClass.is_pseudo http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute is_pseudo gene results record-internal download +TranscriptRecordClasses.TranscriptRecordClass.gene_transcript_count http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute gene_transcript_count gene results record download +GeneRecordClasses.GeneRecordClass.transcript_count http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute transcript_count gene 1 results record +GeneRecordClasses.GeneRecordClass.gene_gff_link http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute gene_gff_link gene 1 record +GeneRecordClasses.GeneRecordClass.representative_transcript http://edamontology.org/topic_0114 Gene Structure GeneRecordClasses.GeneRecordClass attribute representative_transcript gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.representative_transcript http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute representative_transcript gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.is_deprecated http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute is_deprecated gene results download +GeneRecordClasses.GeneRecordClass.is_deprecated http://edamontology.org/topic_0219 Curation and Annotation GeneRecordClasses.GeneRecordClass attribute is_deprecated gene download +TranscriptRecordClasses.TranscriptRecordClass.gene_ortholog_number http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute gene_ortholog_number gene results download +TranscriptRecordClasses.TranscriptRecordClass.gene_paralog_number http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute gene_paralog_number gene results download +TranscriptRecordClasses.TranscriptRecordClass.gene_orthomcl_name http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute gene_orthomcl_name gene download +TranscriptRecordClasses.TranscriptRecordClass.orthomcl_link http://edamontology.org/topic_3299 Evolutionary Biology TranscriptRecordClasses.TranscriptRecordClass attribute orthomcl_link gene results +GeneRecordClasses.GeneRecordClass.ec_number_warning http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ec_number_warning gene record-internal +GeneRecordClasses.GeneRecordClass.ec_num_warn http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ec_num_warn gene record-internal +GeneRecordClasses.GeneRecordClass.ec_inferred_description http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ec_inferred_description gene record-internal +GeneRecordClasses.GeneRecordClass.alphafold_table_help http://edamontology.org/topic_0081 Structure Analysis GeneRecordClasses.GeneRecordClass attribute alphafold_table_help gene record-internal +TranscriptRecordClasses.TranscriptRecordClass.gene_total_hts_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_total_hts_snps gene 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsynonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_nonsynonymous_snps gene 4 results record download +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_synonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_synonymous_snps gene 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_noncoding_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_noncoding_snps gene 2 results record download +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_stop_codon_snps http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_stop_codon_snps gene 5 results record download +TranscriptRecordClasses.TranscriptRecordClass.gene_hts_nonsyn_syn_ratio http://edamontology.org/topic_2885 DNA Polymorphism TranscriptRecordClasses.TranscriptRecordClass attribute gene_hts_nonsyn_syn_ratio gene 3 results record download +TranscriptRecordClasses.TranscriptRecordClass.uniprot_ids http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute uniprot_ids transcript download + +GeneRecordClasses.GeneRecordClass.ortholog_overview http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ortholog_overview gene record download +GeneRecordClasses.GeneRecordClass.ortholog_number http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute ortholog_number gene results download +GeneRecordClasses.GeneRecordClass.paralog_number http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute paralog_number gene results download +GeneRecordClasses.GeneRecordClass.orthomcl_link http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute orthomcl_link gene results record download +GeneRecordClasses.GeneRecordClass.show_strains http://edamontology.org/topic_3299 Evolutionary Biology GeneRecordClasses.GeneRecordClass attribute show_strains gene record-internal +GeneRecordClasses.GeneRecordClass.total_hts_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute total_hts_snps gene 1 results record download +GeneRecordClasses.GeneRecordClass.hts_nonsynonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_nonsynonymous_snps gene 1 results record download +GeneRecordClasses.GeneRecordClass.hts_synonymous_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_synonymous_snps gene 1 results record download +GeneRecordClasses.GeneRecordClass.hts_noncoding_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_noncoding_snps gene 1 results record download +GeneRecordClasses.GeneRecordClass.hts_stop_codon_snps http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_stop_codon_snps gene 1 results record download +GeneRecordClasses.GeneRecordClass.hts_nonsyn_syn_ratio http://edamontology.org/topic_2885 DNA Polymorphism GeneRecordClasses.GeneRecordClass attribute hts_nonsyn_syn_ratio gene 1 results record download +GeneRecordClasses.GeneRecordClass.uniprot_id http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute uniprot_id gene +GeneRecordClasses.GeneRecordClass.uniprot_id_internal http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute uniprot_id_internal gene +TranscriptRecordClasses.TranscriptRecordClass.uniprot_links http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute uniprot_links transcript results +GeneRecordClasses.GeneRecordClass.uniprot_link http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute uniprot_link transcript results download +TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_id http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute gene_entrez_id transcript download +TranscriptRecordClasses.TranscriptRecordClass.gene_entrez_link http://edamontology.org/topic_3345 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute gene_entrez_link transcript results +GeneRecordClasses.GeneRecordClass.entrez_id http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute entrez_id gene +GeneRecordClasses.GeneRecordClass.entrez_link http://edamontology.org/topic_3345 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute entrez_link gene results download +TranscriptRecordClasses.TranscriptRecordClass.transcript_product http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute transcript_product transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.ApolloTranscriptProduct http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute apollo_transcript_description transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.apollo_link_out http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute apollo_link_out transcript results +TranscriptRecordClasses.TranscriptRecordClass.transcript_length http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute transcript_length transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.exon_count http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute exon_count transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.five_prime_utr_length http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute five_prime_utr_length transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.three_prime_utr_length http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute three_prime_utr_length transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.strand http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute strand transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.protein_length http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute protein_length transcript 1 results record download +TranscriptRecordClasses.TranscriptRecordClass.cds_length http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute cds_length transcript 2 results record download +TranscriptRecordClasses.TranscriptRecordClass.genomic_sequence_length GenomicSequenceLocationCategory GenomicSequenceLocationCategory TranscriptRecordClasses.TranscriptRecordClass attribute genomic_sequence_length transcript 2 results record download +TranscriptRecordClasses.TranscriptRecordClass.tm_count http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute tm_count transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.molecular_weight http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute molecular_weight transcript 4 results record download +TranscriptRecordClasses.TranscriptRecordClass.isoelectric_point http://edamontology.org/topic_0123 Protein properties TranscriptRecordClasses.TranscriptRecordClass attribute isoelectric_point transcript 5 results record download + + +TranscriptRecordClasses.TranscriptRecordClass.cdd_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute cdd_id transcript 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.cdd_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute cdd_description transcript 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.gene3d_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute gene3d_id transcript 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.gene3d_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute gene3d_description transcript 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.hamap_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute hamap_id transcript 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.hamap_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute hamap_description transcript 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.ncbifam_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute ncbifam_id transcript 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.ncbifam_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute ncbifam_description transcript 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.panther_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute panther_id transcript 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.panther_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute panther_description transcript 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.pfam_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pfam_id transcript 8 results record download +TranscriptRecordClasses.TranscriptRecordClass.pfam_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pfam_description transcript 9 results record download +TranscriptRecordClasses.TranscriptRecordClass.pirsf_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pirsf_id transcript 10 results record download +TranscriptRecordClasses.TranscriptRecordClass.pirsf_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute pirsf_description transcript 11 results record download +TranscriptRecordClasses.TranscriptRecordClass.prints_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prints_id transcript 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.prints_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prints_description transcript 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prositeprofiles_id transcript 12 results record download +TranscriptRecordClasses.TranscriptRecordClass.prositeprofiles_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute prositeprofiles_description transcript 13 results record download +TranscriptRecordClasses.TranscriptRecordClass.sfld_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute sfld_id transcript 6 results record download +TranscriptRecordClasses.TranscriptRecordClass.sfld_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute sfld_description transcript 7 results record download +TranscriptRecordClasses.TranscriptRecordClass.smart_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute smart_id transcript 14 results record download +TranscriptRecordClasses.TranscriptRecordClass.smart_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute smart_description transcript 15 results record download +TranscriptRecordClasses.TranscriptRecordClass.superfamily_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute superfamily_id transcript 16 results record download +TranscriptRecordClasses.TranscriptRecordClass.superfamily_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute superfamily_description transcript 17 results record download +TranscriptRecordClasses.TranscriptRecordClass.interprofamily_id InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute interprofamily_id transcript 18 results record download +TranscriptRecordClasses.TranscriptRecordClass.interprofamily_description InterProDomainsCategory InterPro Domains TranscriptRecordClasses.TranscriptRecordClass attribute interprofamily_description transcript 19 results record download +TranscriptRecordClasses.TranscriptRecordClass.signalp_41_probability http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute signalp_41_probability transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.signalp_50_probability http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute signalp_50_probability transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.signalp_60_probability http://edamontology.org/topic_0140 Protein targeting and localization TranscriptRecordClasses.TranscriptRecordClass attribute signalp_60_probability transcript results record download +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_function transcript results download +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_process transcript results download +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_component transcript results download +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_function transcript results download +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_process transcript results download +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_component transcript results download +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_id_function transcript results download +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_id_process transcript results download +TranscriptRecordClasses.TranscriptRecordClass.annotated_go_id_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute annotated_go_id_component transcript results download +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_function http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_id_function transcript results download +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_process http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_id_process transcript results download +TranscriptRecordClasses.TranscriptRecordClass.predicted_go_id_component http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute predicted_go_id_component transcript results download +TranscriptRecordClasses.TranscriptRecordClass.ec_numbers http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute ec_numbers transcript results download +TranscriptRecordClasses.TranscriptRecordClass.ec_numbers_derived http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass attribute ec_numbers_derived transcript results download download +TranscriptRecordClasses.TranscriptRecordClass.gene_previous_ids http://edamontology.org/topic_0219 Data identity and mapping TranscriptRecordClasses.TranscriptRecordClass attribute gene_previous_ids transcript results record download +GeneRecordClasses.GeneRecordClass.previous_ids http://edamontology.org/topic_0219 Data identity and mapping GeneRecordClasses.GeneRecordClass attribute previous_ids transcript results download +TranscriptRecordClasses.TranscriptRecordClass.transcripts_found_per_gene http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute transcripts_found_per_gene transcript +TranscriptRecordClasses.TranscriptRecordClass.transcript_index_per_gene http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass attribute transcript_index_per_gene transcript +TranscriptRecordClasses.TranscriptRecordClass.has_missing_transcripts http://edamontology.org/topic_0219 Curation and Annotation TranscriptRecordClasses.TranscriptRecordClass attribute has_missing_transcripts transcript +TranscriptRecordClasses.TranscriptRecordClass.transcript_sequence http://edamontology.org/data_2977 Nucleic Acid Sequence TranscriptRecordClasses.TranscriptRecordClass attribute transcript_sequence transcript download +TranscriptRecordClasses.TranscriptRecordClass.protein_sequence http://edamontology.org/data_2976 Protein Sequence TranscriptRecordClasses.TranscriptRecordClass attribute protein_sequence transcript download +TranscriptRecordClasses.TranscriptRecordClass.prot_seq_warn http://edamontology.org/data_2976 Protein Sequence TranscriptRecordClasses.TranscriptRecordClass attribute prot_seq_warn transcript +TranscriptRecordClasses.TranscriptRecordClass.cds http://edamontology.org/data_2977 Nucleic Acid Sequence TranscriptRecordClasses.TranscriptRecordClass attribute cds transcript download +DynSpanRecordClasses.DynSpanRecordClass.Genes http://edamontology.org/topic_0114 Gene Structure DynSpanRecordClasses.DynSpanRecordClass table Genes results record download +DynSpanRecordClasses.DynSpanRecordClass.ORFs CodingPotentialCategory CodingPotentialCategory DynSpanRecordClasses.DynSpanRecordClass table ORFs download +DynSpanRecordClasses.DynSpanRecordClass.SNPs http://edamontology.org/topic_2885 DNA Polymorphism DynSpanRecordClasses.DynSpanRecordClass table SNPs download +DynSpanRecordClasses.DynSpanRecordClass.ESTs http://edamontology.org/topic_3308 Transcriptomics DynSpanRecordClasses.DynSpanRecordClass table ESTs download +DynSpanRecordClasses.DynSpanRecordClass.primary_key GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute primary_key results record-internal +DynSpanRecordClasses.DynSpanRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation DynSpanRecordClasses.DynSpanRecordClass attribute record_overview record-internal +DynSpanRecordClasses.DynSpanRecordClass.overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute overview +DynSpanRecordClasses.DynSpanRecordClass.otherInfo GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute otherInfo results record download +DynSpanRecordClasses.DynSpanRecordClass.seq_source_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute seq_source_id results record-internal download +DynSpanRecordClasses.DynSpanRecordClass.start_min GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute start_min results record-internal download +DynSpanRecordClasses.DynSpanRecordClass.end_max GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute end_max results record-internal download +DynSpanRecordClasses.DynSpanRecordClass.strand GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute strand results record-internal download +DynSpanRecordClasses.DynSpanRecordClass.length GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory DynSpanRecordClasses.DynSpanRecordClass attribute length results record-internal +DynSpanRecordClasses.DynSpanRecordClass.spanGbrowseImageUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs DynSpanRecordClasses.DynSpanRecordClass attribute spanGbrowseImageUrl record +DynSpanRecordClasses.DynSpanRecordClass.jbrowseUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs DynSpanRecordClasses.DynSpanRecordClass attribute jbrowseUrl record-internal +DynSpanRecordClasses.DynSpanRecordClass.organism http://edamontology.org/topic_0637 Taxonomy DynSpanRecordClasses.DynSpanRecordClass attribute organism results record-internal download +DynSpanRecordClasses.DynSpanRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory DynSpanRecordClasses.DynSpanRecordClass attribute location_text results record-internal download +SequenceRecordClasses.SequenceRecordClass.SequencePieces http://edamontology.org/topic_0196 Sequence Assembly SequenceRecordClasses.SequenceRecordClass table SequencePieces results record download +SequenceRecordClasses.SequenceRecordClass.Aliases http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass table Aliases results record download +SequenceRecordClasses.SequenceRecordClass.Centromere http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass table Centromere 3 results record download +SequenceRecordClasses.SequenceRecordClass.SequenceComments http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass table SequenceComments results record download +SequenceRecordClasses.SequenceRecordClass.Repeats http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass table Repeats results download +SequenceRecordClasses.SequenceRecordClass.TandemRepeats http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass table TandemRepeats results download +SequenceRecordClasses.SequenceRecordClass.LowComplexity http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass table LowComplexity results download +SequenceRecordClasses.SequenceRecordClass.MercatorTable http://edamontology.org/topic_0159 Sequence Comparison SequenceRecordClasses.SequenceRecordClass table MercatorTable results record-internal +SequenceRecordClasses.SequenceRecordClass.SequenceGffDbxrefs http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass table SequenceGffDbxrefs +SequenceRecordClasses.SequenceRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass attribute source_id record-internal download +SequenceRecordClasses.SequenceRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass attribute primary_key results record-internal +SequenceRecordClasses.SequenceRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute record_overview record-internal +SequenceRecordClasses.SequenceRecordClass.overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute overview +SequenceRecordClasses.SequenceRecordClass.project_id GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute project_id record-internal +SequenceRecordClasses.SequenceRecordClass.lc_project_id GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute lc_project_id record-internal +SequenceRecordClasses.SequenceRecordClass.organism http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass attribute organism results record-internal download +SequenceRecordClasses.SequenceRecordClass.Taxonomy http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass table Taxonomy record +SequenceRecordClasses.SequenceRecordClass.dnaContextUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute dnaContextUrl 1 record +SequenceRecordClasses.SequenceRecordClass.jbrowseUrl http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute jbrowseUrl 1 record-internal +SequenceRecordClasses.SequenceRecordClass.JBrowse http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute JBrowse 3 results record-internal download +SequenceRecordClasses.SequenceRecordClass.sequence_retrieval http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute sequence_retrieval 3 results record download +SequenceRecordClasses.SequenceRecordClass.download_link http://edamontology.org/topic_0160 Sequence sites, features and motifs SequenceRecordClasses.SequenceRecordClass attribute download_link results record download +SequenceRecordClasses.SequenceRecordClass.chromosome GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute chromosome results record-internal +SequenceRecordClasses.SequenceRecordClass.description GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute description record-internal download +SequenceRecordClasses.SequenceRecordClass.a_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute a_count results record-internal download +SequenceRecordClasses.SequenceRecordClass.c_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute c_count results record-internal download +SequenceRecordClasses.SequenceRecordClass.g_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute g_count results record-internal download +SequenceRecordClasses.SequenceRecordClass.t_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute t_count results record-internal download +SequenceRecordClasses.SequenceRecordClass.other_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute other_count results record-internal download +SequenceRecordClasses.SequenceRecordClass.formatted_length GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute formatted_length results record-internal download +SequenceRecordClasses.SequenceRecordClass.at_percent http://edamontology.org/topic_0157 Sequence composition, complexity and repeats SequenceRecordClasses.SequenceRecordClass attribute at_percent results record-internal +SequenceRecordClasses.SequenceRecordClass.organism_full http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass attribute organism_full gene record-internal +SequenceRecordClasses.SequenceRecordClass.chromosome_order_num GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute chromosome_order_num results record-internal +SequenceRecordClasses.SequenceRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy SequenceRecordClasses.SequenceRecordClass attribute formatted_organism record-internal download +SequenceRecordClasses.SequenceRecordClass.sequence_description http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute sequence_description results record-internal download +SequenceRecordClasses.SequenceRecordClass.genbank_accession http://edamontology.org/topic_3345 Data identity and mapping SequenceRecordClasses.SequenceRecordClass attribute genbank_accession download +SequenceRecordClasses.SequenceRecordClass.sequence_type GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SequenceRecordClasses.SequenceRecordClass attribute sequence_type results record-internal download +SequenceRecordClasses.SequenceRecordClass.has_msa http://edamontology.org/topic_0159 Sequence Comparison SequenceRecordClasses.SequenceRecordClass attribute has_msa download +SequenceRecordClasses.SequenceRecordClass.gene_count http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute gene_count results record-internal download +SequenceRecordClasses.SequenceRecordClass.description http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute description results record-internal download +SequenceRecordClasses.SequenceRecordClass.is_annotated http://edamontology.org/topic_0219 Curation and Annotation SequenceRecordClasses.SequenceRecordClass attribute is_annotated download +SequenceRecordClasses.SequenceRecordClass.release_policy http://edamontology.org/topic_3068 Literature and Reference SequenceRecordClasses.SequenceRecordClass attribute release_policy record-internal +SequenceRecordClasses.SequenceRecordClass.attribution http://edamontology.org/topic_3068 Literature and Reference SequenceRecordClasses.SequenceRecordClass attribute attribution record-internal download +SequenceRecordClasses.SequenceRecordClass.user_comment_link_url http://www.w3.org/2002/07/owl#Thing thing SequenceRecordClasses.SequenceRecordClass attribute user_comment_link_url record-internal +EstRecordClasses.EstRecordClass.ReferenceInfo http://edamontology.org/topic_3068 Literature and Reference EstRecordClasses.EstRecordClass table ReferenceInfo results record download +EstRecordClasses.EstRecordClass.AlignmentInfo http://edamontology.org/topic_0159 Sequence Comparison EstRecordClasses.EstRecordClass table AlignmentInfo results record download +EstRecordClasses.EstRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping EstRecordClasses.EstRecordClass attribute primary_key results record-internal +EstRecordClasses.EstRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute record_overview record-internal +EstRecordClasses.EstRecordClass.organism http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute organism results record-internal +EstRecordClasses.EstRecordClass.overview http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute overview record-internal +EstRecordClasses.EstRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping EstRecordClasses.EstRecordClass attribute source_id record-internal +EstRecordClasses.EstRecordClass.a_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute a_count results record download +EstRecordClasses.EstRecordClass.c_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute c_count results record download +EstRecordClasses.EstRecordClass.g_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute g_count results record download +EstRecordClasses.EstRecordClass.t_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute t_count results record download +EstRecordClasses.EstRecordClass.other_count http://edamontology.org/topic_0157 Sequence composition, complexity and repeats EstRecordClasses.EstRecordClass attribute other_count results record download +EstRecordClasses.EstRecordClass.length GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory EstRecordClasses.EstRecordClass attribute length results record-internal download +EstRecordClasses.EstRecordClass.dbest_name http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute dbest_name results record-internal download +EstRecordClasses.EstRecordClass.vector http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute vector results record-internal download +EstRecordClasses.EstRecordClass.stage http://edamontology.org/topic_0219 Curation and Annotation EstRecordClasses.EstRecordClass attribute stage results record-internal download +EstRecordClasses.EstRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute organism_text record-internal download +EstRecordClasses.EstRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute formatted_organism record-internal +EstRecordClasses.EstRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy EstRecordClasses.EstRecordClass attribute ncbi_tax_id record-internal download +EstRecordClasses.EstRecordClass.sequence http://edamontology.org/data_2977 Nucleic Acid Sequence EstRecordClasses.EstRecordClass attribute sequence record download +EstRecordClasses.EstRecordClass.sequence_length http://edamontology.org/data_2977 Nucleic Acid Sequence EstRecordClasses.EstRecordClass attribute sequence_length 1 record download +JunctionRecordClasses.JunctionRecordClass.SampleInfo http://edamontology.org/topic_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass table SampleInfo results record download +##JunctionRecordClasses.JunctionRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping JunctionRecordClasses.JunctionRecordClass attribute primary_key results record-internal +##JunctionRecordClasses.JunctionRecordClass.intron_feature_id http://edamontology.org/data_3345 Data identity and mapping JunctionRecordClasses.JunctionRecordClass attribute intron_feature_id record-internal download +JunctionRecordClasses.JunctionRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation JunctionRecordClasses.JunctionRecordClass attribute record_overview record-internal +JunctionRecordClasses.JunctionRecordClass.location http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute location record download +JunctionRecordClasses.JunctionRecordClass.sequence_source_id http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute sequence_source_id record download +JunctionRecordClasses.JunctionRecordClass.segment_start http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute segment_start record download +JunctionRecordClasses.JunctionRecordClass.segment_end http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute segment_end record download +JunctionRecordClasses.JunctionRecordClass.is_reversed http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute is_reversed record download +JunctionRecordClasses.JunctionRecordClass.total_unique http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute total_unique record download +JunctionRecordClasses.JunctionRecordClass.total_isrpm http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute total_isrpm record download +JunctionRecordClasses.JunctionRecordClass.gene_source_id http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute gene_source_id record download +JunctionRecordClasses.JunctionRecordClass.annotated_intron http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute annotated_intron record download +JunctionRecordClasses.JunctionRecordClass.percent_max http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute record download +##JunctionRecordClasses.JunctionRecordClass.# http://edamontology.org/data_3308 Transcriptomics JunctionRecordClasses.JunctionRecordClass attribute # record download +LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.SampleInfo http://edamontology.org/topic_0080 Gene Models LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass table SampleInfo results record download +LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass.record_overview http://edamontology.org/topic_0080 Gene Models LongReadTranscriptRecordClasses.LongReadTranscriptRecordClass attribute record_overview record-internal +PopsetRecordClasses.PopsetRecordClass.Reference http://edamontology.org/topic_3068 Literature and Reference PopsetRecordClasses.PopsetRecordClass table Reference results record download +PopsetRecordClasses.PopsetRecordClass.GeneOverlap http://edamontology.org/topic_0159 Sequence Comparison PopsetRecordClasses.PopsetRecordClass table GeneOverlap results record download +PopsetRecordClasses.PopsetRecordClass.PopsetComments http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table PopsetComments results record download +PopsetRecordClasses.PopsetRecordClass.organismTable http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass table organismTable results download +PopsetRecordClasses.PopsetRecordClass.descriptionTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table descriptionTable results download +PopsetRecordClasses.PopsetRecordClass.productTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table productTable results download +PopsetRecordClasses.PopsetRecordClass.strainTable http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass table strainTable results download +PopsetRecordClasses.PopsetRecordClass.hostTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table hostTable results download +PopsetRecordClasses.PopsetRecordClass.noteTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table noteTable results download +PopsetRecordClasses.PopsetRecordClass.isolation_sourceTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table isolation_sourceTable results download +PopsetRecordClasses.PopsetRecordClass.geographic_locationTable http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass table geographic_locationTable results download +PopsetRecordClasses.PopsetRecordClass.primary_key http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute primary_key results record-internal +PopsetRecordClasses.PopsetRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute record_overview record-internal +PopsetRecordClasses.PopsetRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping PopsetRecordClasses.PopsetRecordClass attribute source_id download +PopsetRecordClasses.PopsetRecordClass.organism http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass attribute organism results record-internal download +PopsetRecordClasses.PopsetRecordClass.strain http://edamontology.org/topic_0637 Taxonomy PopsetRecordClasses.PopsetRecordClass attribute strain results record-internal download +PopsetRecordClasses.PopsetRecordClass.specific_host http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute specific_host 1 results record-internal download +PopsetRecordClasses.PopsetRecordClass.curated_isolation_source http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute curated_isolation_source 5 results record-internal download +PopsetRecordClasses.PopsetRecordClass.isolation_source http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute isolation_source 4 results record-internal download +PopsetRecordClasses.PopsetRecordClass.geographic_location http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute geographic_location 2 results record-internal download +PopsetRecordClasses.PopsetRecordClass.curated_geographic_location http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute curated_geographic_location 3 results record-internal download +PopsetRecordClasses.PopsetRecordClass.product http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute product 7 results record-internal download +PopsetRecordClasses.PopsetRecordClass.description http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute description 6 results record-internal download +PopsetRecordClasses.PopsetRecordClass.note http://edamontology.org/topic_0219 Curation and Annotation PopsetRecordClasses.PopsetRecordClass attribute note download +PopsetRecordClasses.PopsetRecordClass.sequence http://edamontology.org/data_2977 Nucleic Acid Sequence PopsetRecordClasses.PopsetRecordClass attribute sequence record download +PopsetRecordClasses.PopsetRecordClass.sequence_length http://edamontology.org/data_2977 Nucleic Acid Sequence PopsetRecordClasses.PopsetRecordClass attribute sequence_length 1 record download +PopsetRecordClasses.PopsetRecordClass.user_comment_link_url http://www.w3.org/2002/07/owl#Thing thing PopsetRecordClasses.PopsetRecordClass attribute user_comment_link_url record-internal +OrfRecordClasses.OrfRecordClass.Locations GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass table Locations results record-internal download +OrfRecordClasses.OrfRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping OrfRecordClasses.OrfRecordClass attribute primary_key results +OrfRecordClasses.OrfRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation OrfRecordClasses.OrfRecordClass attribute record_overview record-internal +OrfRecordClasses.OrfRecordClass.organism http://edamontology.org/topic_0637 Taxonomy OrfRecordClasses.OrfRecordClass attribute organism results download +OrfRecordClasses.OrfRecordClass.orf_location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_location_text 2 results +OrfRecordClasses.OrfRecordClass.overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrfRecordClasses.OrfRecordClass attribute overview +OrfRecordClasses.OrfRecordClass.jbrowseTracks http://edamontology.org/topic_0160 Sequence sites, features and motifs OrfRecordClasses.OrfRecordClass attribute jbrowseTracks +OrfRecordClasses.OrfRecordClass.source_id http://edamontology.org/topic_3345 Data identity and mapping OrfRecordClasses.OrfRecordClass attribute source_id download +OrfRecordClasses.OrfRecordClass.nas_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute nas_id 1 results download +OrfRecordClasses.OrfRecordClass.orf_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_start download +OrfRecordClasses.OrfRecordClass.orf_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_end download +OrfRecordClasses.OrfRecordClass.orf_start_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_start_text 3 results download +OrfRecordClasses.OrfRecordClass.orf_end_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_end_text 4 results download +OrfRecordClasses.OrfRecordClass.orf_strand GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orf_strand 5 results download +OrfRecordClasses.OrfRecordClass.orfGbrowseImageUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute orfGbrowseImageUrl record +OrfRecordClasses.OrfRecordClass.jbrowseUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory OrfRecordClasses.OrfRecordClass attribute jbrowseUrl record-internal +SnpRecordClasses.SnpRecordClass.context_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute context_start record-internal +SnpRecordClasses.SnpRecordClass.context_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute context_end record-internal +SnpRecordClasses.SnpRecordClass.align_context_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute align_context_start record-internal +SnpRecordClasses.SnpRecordClass.align_context_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute align_context_end record-internal +SnpRecordClasses.SnpRecordClass.snps_alignment_form GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute snps_alignment_form record +SnpRecordClasses.SnpRecordClass.lc_project_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute lc_project_id record-internal +SnpRecordClasses.SnpRecordClass.snpGbrowseImageUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute snpGbrowseImageUrl record +SnpRecordClasses.SnpRecordClass.jbrowseUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute jbrowseUrl record-internal +SnpChipRecordClasses.SnpChipRecordClass.snpChipGbrowseImageUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute snpChipGbrowseImageUrl record +SnpChipRecordClasses.SnpChipRecordClass.jbrowseUrl GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute jbrowseUrl record-internal +SnpChipRecordClasses.SnpChipRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SnpChipRecordClasses.SnpChipRecordClass attribute record_overview record-internal +SnpChipRecordClasses.SnpChipRecordClass.context_start GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute context_start record-internal +SnpChipRecordClasses.SnpChipRecordClass.context_end GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute context_end record-internal +SnpChipRecordClasses.SnpChipRecordClass.lc_project_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute lc_project_id record-internal +SnpChipRecordClasses.SnpChipRecordClass.na_sequence_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute na_sequence_id record-internal download +OrfRecordClasses.OrfRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy OrfRecordClasses.OrfRecordClass attribute organism_text +OrfRecordClasses.OrfRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy OrfRecordClasses.OrfRecordClass attribute formatted_organism results download +OrfRecordClasses.OrfRecordClass.sequence http://edamontology.org/data_2976 Protein Sequence OrfRecordClasses.OrfRecordClass attribute sequence record download +OrfRecordClasses.OrfRecordClass.sequence_length http://edamontology.org/data_2976 Protein Sequence OrfRecordClasses.OrfRecordClass attribute sequence_length record +OrfRecordClasses.OrfRecordClass.attribution http://edamontology.org/topic_3068 Literature and Reference OrfRecordClasses.OrfRecordClass attribute attribution record-internal download +PathwayRecordClasses.PathwayRecordClass.CompoundsMetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table CompoundsMetabolicPathways record download +PathwayRecordClasses.PathwayRecordClass.PathwayReactionsXrefs http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayReactionsXrefs record +PathwayRecordClasses.PathwayRecordClass.PathwayGraphs http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayGraphs record-internal +PathwayRecordClasses.PathwayRecordClass.PathwayNodes http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayNodes record-internal +PathwayRecordClasses.PathwayRecordClass.PathwayEdges http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table PathwayEdges record-internal +PathwayRecordClasses.PathwayRecordClass.ECNumberOrganismMap http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table ECNumberOrganismMap +##PathwayRecordClasses.PathwayRecordClass.CompoundLabel http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass table CompoundLabel results record download +PathwayRecordClasses.PathwayRecordClass.source_id http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute source_id record-internal +PathwayRecordClasses.PathwayRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation PathwayRecordClasses.PathwayRecordClass attribute record_overview record-internal +PathwayRecordClasses.PathwayRecordClass.project_id http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute project_id record-internal download +PathwayRecordClasses.PathwayRecordClass.source http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute source results record-internal download +PathwayRecordClasses.PathwayRecordClass.primary_key http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute primary_key record-internal download +PathwayRecordClasses.PathwayRecordClass.name http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute name results record-internal download +PathwayRecordClasses.PathwayRecordClass.total_enzyme_count http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute total_enzyme_count results record-internal download +PathwayRecordClasses.PathwayRecordClass.total_compound_count http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute total_compound_count results record-internal download +PathwayRecordClasses.PathwayRecordClass.url http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute url record-internal +##PathwayRecordClasses.PathwayRecordClass.external_url http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute external_url record +PathwayRecordClasses.PathwayRecordClass.drawing http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute drawing record +PathwayRecordClasses.PathwayRecordClass.external_db_name http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute external_db_name record-internal +PathwayRecordClasses.PathwayRecordClass.external_db_version http://edamontology.org/topic_0753 Metabolic Pathways PathwayRecordClasses.PathwayRecordClass attribute external_db_version record-internal download +SnpRecordClasses.SnpRecordClass.HTSStrains http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass table HTSStrains 3 record +SnpRecordClasses.SnpRecordClass.AlleleCount http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass table AlleleCount 1 record +SnpRecordClasses.SnpRecordClass.CountrySummary http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass table CountrySummary 2 record download +SnpRecordClasses.SnpRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping SnpRecordClasses.SnpRecordClass attribute primary_key results +SnpRecordClasses.SnpRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation SnpRecordClasses.SnpRecordClass attribute record_overview record-internal +SnpRecordClasses.SnpRecordClass.organism http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute organism +SnpRecordClasses.SnpRecordClass.snp_overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SnpRecordClasses.SnpRecordClass attribute snp_overview +SnpRecordClasses.SnpRecordClass.gene_context http://edamontology.org/topic_0160 Sequence sites, features and motifs SnpRecordClasses.SnpRecordClass attribute gene_context +SnpRecordClasses.SnpRecordClass.seq_source_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute seq_source_id record-internal download +SnpRecordClasses.SnpRecordClass.location_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute location_text download +SnpRecordClasses.SnpRecordClass.snp_location GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute snp_location results record-internal download +SnpRecordClasses.SnpRecordClass.chromosome_order_num GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute chromosome_order_num download +SnpRecordClasses.SnpRecordClass.location GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpRecordClasses.SnpRecordClass attribute location +SnpRecordClasses.SnpRecordClass.reference_strain http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute reference_strain +SnpRecordClasses.SnpRecordClass.reference_na http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute reference_na +SnpRecordClasses.SnpRecordClass.reference_aa http://edamontology.org/topic_2886 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute reference_aa +SnpRecordClasses.SnpRecordClass.ref_aa_with_position http://edamontology.org/topic_2887 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute ref_aa_with_position record-internal download +SnpRecordClasses.SnpRecordClass.lflank http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute lflank results record-internal download +SnpRecordClasses.SnpRecordClass.allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute allele results record-internal download +SnpRecordClasses.SnpRecordClass.rflank http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute rflank results record-internal download +SnpRecordClasses.SnpRecordClass.snp_context http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute snp_context results record-internal download +SnpRecordClasses.SnpRecordClass.sampleId http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute sampleId results record-internal download +SnpRecordClasses.SnpRecordClass.snp_context_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute snp_context_gene_strand results record-internal download +SnpRecordClasses.SnpRecordClass.gene_source_id http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute gene_source_id download record-internal +SnpRecordClasses.SnpRecordClass.linkedGeneId http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute linkedGeneId results record-internal +SnpRecordClasses.SnpRecordClass.gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute gene_strand results record-internal download +SnpRecordClasses.SnpRecordClass.is_coding http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute is_coding results record-internal download +SnpRecordClasses.SnpRecordClass.position_in_CDS http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute position_in_CDS results record-internal download +SnpRecordClasses.SnpRecordClass.position_in_protein http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute position_in_protein results record-internal download +SnpRecordClasses.SnpRecordClass.has_nonsynonymous_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute has_nonsynonymous_allele results record-internal download +SnpRecordClasses.SnpRecordClass.lflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute lflank_gene_strand results record-internal download +SnpRecordClasses.SnpRecordClass.allele_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute allele_gene_strand results record-internal download +SnpRecordClasses.SnpRecordClass.rflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute rflank_gene_strand results record-internal download +SnpRecordClasses.SnpRecordClass.major_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_allele_frequency results record-internal download +SnpRecordClasses.SnpRecordClass.minor_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_allele_frequency results record-internal download +SnpRecordClasses.SnpRecordClass.major_allele_and_freq http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_allele_and_freq record-internal download +SnpRecordClasses.SnpRecordClass.minor_allele_and_freq http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_allele_and_freq record-internal download +SnpRecordClasses.SnpRecordClass.distinct_strain_count http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute distinct_strain_count results record-internal download +SnpRecordClasses.SnpRecordClass.major_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_allele results record-internal download +SnpRecordClasses.SnpRecordClass.minor_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_allele results record-internal download +SnpRecordClasses.SnpRecordClass.major_product http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute major_product results record-internal download +SnpRecordClasses.SnpRecordClass.minor_product http://edamontology.org/topic_2885 DNA Polymorphism SnpRecordClasses.SnpRecordClass attribute minor_product results record-internal download +SnpRecordClasses.SnpRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute organism_text record-internal +SnpRecordClasses.SnpRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute formatted_organism results record-internal +SnpRecordClasses.SnpRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy SnpRecordClasses.SnpRecordClass attribute ncbi_tax_id record-internal +SnpChipRecordClasses.SnpChipRecordClass.StrainsWithMetaData http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass table StrainsWithMetaData 3 record download +SnpChipRecordClasses.SnpChipRecordClass.OtherSNPs http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass table OtherSNPs 2 record download +SnpChipRecordClasses.SnpChipRecordClass.CountrySummary http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass table CountrySummary 1 record download +SnpChipRecordClasses.SnpChipRecordClass.primary_key http://edamontology.org/topic_3345 Data identity and mapping SnpChipRecordClasses.SnpChipRecordClass attribute primary_key results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.organism http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute organism +SnpChipRecordClasses.SnpChipRecordClass.snp_overview GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory SnpChipRecordClasses.SnpChipRecordClass attribute snp_overview +SnpChipRecordClasses.SnpChipRecordClass.gene_context http://edamontology.org/topic_0160 Sequence sites, features and motifs SnpChipRecordClasses.SnpChipRecordClass attribute gene_context +SnpChipRecordClasses.SnpChipRecordClass.type http://edamontology.org/topic_0219 Curation and Annotation SnpChipRecordClasses.SnpChipRecordClass attribute type +SnpChipRecordClasses.SnpChipRecordClass.seq_source_id GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute seq_source_id download +SnpChipRecordClasses.SnpChipRecordClass.start_min_text GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute start_min_text download +SnpChipRecordClasses.SnpChipRecordClass.snp_location GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute snp_location results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.chromosome_order_num GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute chromosome_order_num record-internal download +SnpChipRecordClasses.SnpChipRecordClass.start_min GenomicSequenceLocationCategory GenomicSequenceLocationCategory SnpChipRecordClasses.SnpChipRecordClass attribute start_min +SnpChipRecordClasses.SnpChipRecordClass.reference_strain http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute reference_strain +SnpChipRecordClasses.SnpChipRecordClass.reference_na http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute reference_na +SnpChipRecordClasses.SnpChipRecordClass.reference_aa http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute reference_aa download +SnpChipRecordClasses.SnpChipRecordClass.lflank http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute lflank results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute allele results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.rflank http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute rflank results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.gene_source_id http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute gene_source_id +SnpChipRecordClasses.SnpChipRecordClass.linkedGeneId http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute linkedGeneId results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.gene_strand http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute gene_strand results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.is_coding http://edamontology.org/topic_0114 Gene Structure SnpChipRecordClasses.SnpChipRecordClass attribute is_coding results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.position_in_CDS http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute position_in_CDS results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.position_in_protein http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute position_in_protein results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.has_nonsynonymous_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute has_nonsynonymous_allele results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.lflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute lflank_gene_strand results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.allele_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute allele_gene_strand results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.rflank_gene_strand http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute rflank_gene_strand results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.major_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_allele_frequency results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.minor_allele_frequency http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_allele_frequency results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.major_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_allele results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.major_product http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_product results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.minor_allele http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_allele results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.minor_product http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_product results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.distinct_strain_count http://edamontology.org/topic_2885 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute distinct_strain_count results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.snp_context http://edamontology.org/topic_2886 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute snp_context results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.snp_context_gene_strand http://edamontology.org/topic_2887 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute snp_context_gene_strand results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.major_allele_and_freq http://edamontology.org/topic_2888 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute major_allele_and_freq record-internal download +SnpChipRecordClasses.SnpChipRecordClass.minor_allele_and_freq http://edamontology.org/topic_2889 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute minor_allele_and_freq record-internal download +SnpChipRecordClasses.SnpChipRecordClass.ref_aa_with_position http://edamontology.org/topic_2890 DNA Polymorphism SnpChipRecordClasses.SnpChipRecordClass attribute ref_aa_with_position results record-internal download +SnpChipRecordClasses.SnpChipRecordClass.organism_text http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute organism_text record-internal +SnpChipRecordClasses.SnpChipRecordClass.formatted_organism http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute formatted_organism results record-internal +SnpChipRecordClasses.SnpChipRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy SnpChipRecordClasses.SnpChipRecordClass attribute ncbi_tax_id download +CompoundRecordClasses.CompoundRecordClass.Properties http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Properties results record download +CompoundRecordClasses.CompoundRecordClass.IupacNames http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table IupacNames results record download +CompoundRecordClasses.CompoundRecordClass.Definition http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Definition results record download +CompoundRecordClasses.CompoundRecordClass.SecondaryIds http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table SecondaryIds results record download +CompoundRecordClasses.CompoundRecordClass.Synonyms http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Synonyms results record download +CompoundRecordClasses.CompoundRecordClass.CompoundName http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table CompoundName Record-internal +CompoundRecordClasses.CompoundRecordClass.CompoundsMetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways CompoundRecordClasses.CompoundRecordClass table CompoundsMetabolicPathways 2 results record download +CompoundRecordClasses.CompoundRecordClass.MetabolicPathways http://edamontology.org/topic_0753 Metabolic Pathways CompoundRecordClasses.CompoundRecordClass table MetabolicPathways 1 results record download +CompoundRecordClasses.CompoundRecordClass.Structures http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table Structures record +CompoundRecordClasses.CompoundRecordClass.MassSpecGraphs http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table MassSpecGraphs results record download +CompoundRecordClasses.CompoundRecordClass.MassSpecGraphsDataTable http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass table MassSpecGraphsDataTable record-internal download + + + +CompoundRecordClasses.CompoundRecordClass.primary_key http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute primary_key results +CompoundRecordClasses.CompoundRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation CompoundRecordClasses.CompoundRecordClass attribute record_overview record-internal +CompoundRecordClasses.CompoundRecordClass.overview http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute overview +CompoundRecordClasses.CompoundRecordClass.definition http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute definition results download +CompoundRecordClasses.CompoundRecordClass.formula http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute formula results download +CompoundRecordClasses.CompoundRecordClass.secondary_ids http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute secondary_ids results download +CompoundRecordClasses.CompoundRecordClass.name http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute name results download +CompoundRecordClasses.CompoundRecordClass.synonyms http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute synonyms +CompoundRecordClasses.CompoundRecordClass.default_structure http://edamontology.org/topic_3172 Metabolomics CompoundRecordClasses.CompoundRecordClass attribute default_structure record-internal + download +DatasourceRecordClasses.DatasourceRecordClass.Publications http://edamontology.org/topic_3068 Literature and Reference DatasourceRecordClasses.DatasourceRecordClass table Publications datasource record download +DatasourceRecordClasses.DatasourceRecordClass.References http://edamontology.org/topic_3068 Literature and Reference DatasourceRecordClasses.DatasourceRecordClass table References datasource record download +DatasourceRecordClasses.DatasourceRecordClass.Version http://edamontology.org/topic_0219 Curation and Annotation DatasourceRecordClasses.DatasourceRecordClass table Version datasource record download +OrganismRecordClasses.OrganismRecordClass.SequenceCounts http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass table SequenceCounts results record download +OrganismRecordClasses.OrganismRecordClass.GeneCounts http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass table GeneCounts results record +OrganismRecordClasses.OrganismRecordClass.GenomeSequencingAndAnnotationAttribution GenomicSequencePropertiesCategory Genomic Sequence Properties Category OrganismRecordClasses.OrganismRecordClass table GenomeSequencingAndAnnotationAttribution 4 results record +OrganismRecordClasses.OrganismRecordClass.primary_key http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute primary_key results download +OrganismRecordClasses.OrganismRecordClass.overview http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute overview +OrganismRecordClasses.OrganismRecordClass.record_overview http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute record_overview record-internal +OrganismRecordClasses.OrganismRecordClass.URLGenomeFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLGenomeFasta download +OrganismRecordClasses.OrganismRecordClass.URLtranscriptFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLtranscriptFasta download +OrganismRecordClasses.OrganismRecordClass.URLcdsFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLcdsFasta download +OrganismRecordClasses.OrganismRecordClass.URLproteinFasta http://edamontology.org/data_2044 sequences OrganismRecordClasses.OrganismRecordClass attribute URLproteinFasta download + +OrganismRecordClasses.OrganismRecordClass.URLgff http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute URLgff download + +OrganismRecordClasses.OrganismRecordClass.strain http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute strain results record download +OrganismRecordClasses.OrganismRecordClass.contigCount GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute contigCount 3 results record download +OrganismRecordClasses.OrganismRecordClass.supercontigCount GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute supercontigCount 2 results record download +OrganismRecordClasses.OrganismRecordClass.chromosomeCount GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute chromosomeCount 1 results record download +OrganismRecordClasses.OrganismRecordClass.genecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute genecount record download +OrganismRecordClasses.OrganismRecordClass.genecount_number http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute genecount_number +OrganismRecordClasses.OrganismRecordClass.codinggenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute codinggenecount results record download +OrganismRecordClasses.OrganismRecordClass.pseudogenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute pseudogenecount results record download +OrganismRecordClasses.OrganismRecordClass.othergenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute othergenecount results record download +OrganismRecordClasses.OrganismRecordClass.ecnumbercount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute ecnumbercount results record download +OrganismRecordClasses.OrganismRecordClass.gocount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute gocount results record download +OrganismRecordClasses.OrganismRecordClass.popsetcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute popsetcount results record download +OrganismRecordClasses.OrganismRecordClass.rnaseqcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute rnaseqcount results record download +OrganismRecordClasses.OrganismRecordClass.chipchipgenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute chipchipgenecount results record download +OrganismRecordClasses.OrganismRecordClass.rtpcrcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute rtpcrcount results record download +OrganismRecordClasses.OrganismRecordClass.estcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute estcount results record download +OrganismRecordClasses.OrganismRecordClass.snpcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute snpcount results record download +OrganismRecordClasses.OrganismRecordClass.orthologcount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute orthologcount results record download +OrganismRecordClasses.OrganismRecordClass.arraygenecount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute arraygenecount results record download +OrganismRecordClasses.OrganismRecordClass.proteomicscount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute proteomicscount results record download +OrganismRecordClasses.OrganismRecordClass.tfbscount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute tfbscount results record download +OrganismRecordClasses.OrganismRecordClass.communitycount http://edamontology.org/data_0916 Gene report OrganismRecordClasses.OrganismRecordClass attribute communitycount results record download +OrganismRecordClasses.OrganismRecordClass.download_link http://edamontology.org/topic_0160 http://edamontology.org/data_0916 Gene report attribute download_link results record download +OrganismRecordClasses.OrganismRecordClass.organism_name http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute organism_name results +OrganismRecordClasses.OrganismRecordClass.species http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute species results record download +OrganismRecordClasses.OrganismRecordClass.is_annotated_genome http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute is_annotated_genome +OrganismRecordClasses.OrganismRecordClass.is_reference_strain http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute is_reference_strain results download +OrganismRecordClasses.OrganismRecordClass.organism http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute organism +OrganismRecordClasses.OrganismRecordClass.organism_full http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute organism_full gene record-internal +OrganismRecordClasses.OrganismRecordClass.ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute ncbi_tax_id download +OrganismRecordClasses.OrganismRecordClass.species_ncbi_tax_id http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute species_ncbi_tax_id download +OrganismRecordClasses.OrganismRecordClass.ncbi_taxon_url http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute ncbi_taxon_url results record +OrganismRecordClasses.OrganismRecordClass.species_ncbi_taxon_url http://edamontology.org/topic_0637 Taxonomy OrganismRecordClasses.OrganismRecordClass attribute species_ncbi_taxon_url results record +OrganismRecordClasses.OrganismRecordClass.genome_source GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute genome_source results download +OrganismRecordClasses.OrganismRecordClass.annotation_source GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute annotation_source results download +OrganismRecordClasses.OrganismRecordClass.project_id http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute project_id results download +OrganismRecordClasses.OrganismRecordClass.database_version http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute database_version +OrganismRecordClasses.OrganismRecordClass.busco_genome GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute busco_genome results download +OrganismRecordClasses.OrganismRecordClass.busco_protein GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute busco_protein results download +OrganismRecordClasses.OrganismRecordClass.busco_lineage_dataset GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute busco_lineage_dataset results download + +OrganismRecordClasses.OrganismRecordClass.megabps GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute megabps download +OrganismRecordClasses.OrganismRecordClass.megabpsurl GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute megabpsurl results +OrganismRecordClasses.OrganismRecordClass.genecounturl http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute genecounturl results record +OrganismRecordClasses.OrganismRecordClass.isOrganellar_flag http://edamontology.org/topic_0219 Curation and Annotation OrganismRecordClasses.OrganismRecordClass attribute isOrganellar_flag results download +OrganismRecordClasses.OrganismRecordClass.is_published http://edamontology.org/topic_3068 Literature and Reference OrganismRecordClasses.OrganismRecordClass attribute is_published +OrganismRecordClasses.OrganismRecordClass.genome_version GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute genome_version record-internal results download +OrganismRecordClasses.OrganismRecordClass.annotation_version GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute annotation_version record-internal results download +OrganismRecordClasses.OrganismRecordClass.release_policy http://edamontology.org/topic_3068 Literature and Reference OrganismRecordClasses.OrganismRecordClass attribute release_policy +OrganismRecordClasses.OrganismRecordClass.is_in_apollo GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute is_in_apollo download +OrganismRecordClasses.OrganismRecordClass.apollolink GenomicSequencePropertiesCategory GenomicSequencePropertiesCategory OrganismRecordClasses.OrganismRecordClass attribute apollolink results +RflpIsolateRecordClasses.RflpIsolateRecordClass.host http://edamontology.org/topic_0637 Taxonomy RflpIsolateRecordClasses.RflpIsolateRecordClass attribute host results record download +RflpIsolateRecordClasses.RflpIsolateRecordClass.geographic_location http://edamontology.org/topic_0219 Curation and Annotation RflpIsolateRecordClasses.RflpIsolateRecordClass attribute geographic_location 2 results record download +RflpIsolateRecordClasses.RflpIsolateRecordClass.organ http://edamontology.org/topic_3067 Curation and Annotation RflpIsolateRecordClasses.RflpIsolateRecordClass attribute organ 2 results record +UserFileRecords.UserFile.filename_link http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute filename_link results +UserFileRecords.UserFile.title http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute title results +UserFileRecords.UserFile.notes http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute notes results +UserFileRecords.UserFile.filesize http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute filesize results +UserFileRecords.UserFile.format http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute format results +UserFileRecords.UserFile.uploadtime http://www.w3.org/2002/07/owl#Thing thing UserFileRecords.UserFile attribute uploadtime results +derisi_timeseries_pie http://purl.obolibrary.org/obo/OBI_0001985 PathwayRecordClasses.PathwayRecordClass attribute derisi_timeseries_pie record-internal graph-internal +## TEMPLATE_ANCHOR datasetCategory +## TEMPLATE_ANCHOR chipchipCategories + +## TEMPLATE_ANCHOR graphTextAttributeCategory +## TEMPLATE_ANCHOR profileSampleAttributesCategory +## TEMPLATE_ANCHOR profileMinMaxAttributesCategory +## TEMPLATE_ANCHOR profileMinMaxAttributesRnaSenseCategory +## TEMPLATE_ANCHOR profileMinMaxAttributesRnaAntisenseCategory +## TEMPLATE_ANCHOR phenotypeEdaAttributeCategory +## TEMPLATE_ANCHOR cellularLocalizationEdaAttributeCategory + +## TEMPLATE_ANCHOR metaboliteGraphTextAttributeCategory +## TEMPLATE_ANCHOR graphTextAttributeCategoryPathwayRecord +searchCategory-phenotype-text http://edamontology.org/topic_3298 Phenomics text-phenotype Phenotype Text PT Search for genes based on text searching phenotype data. internal +searchCategory-phenotype-molecular http://edamontology.org/topic_3298 Phenomics molecular-phenotype-data Molecular Phenotype MP Search for genes based on phenotype data internal +searchCategory-cellular-localization-quantitative http://edamontology.org/topic_0140 Protein targeting and localisation quantitative-cellular-localization Quantitative Cellular Localization QCL Search for genes based on quantitative cellular localization data internal +searchCategory-cellular-localization-goassoc http://edamontology.org/topic_0140 Protein targeting and localisation goassoc-cellular-localization GO Terms from Cellular Localization GOCL Search for genes based on GO Terms from cellular localization data internal +searchCategory-longread http://edamontology.org/topic_0114 Gene Structure longread Long Read Evidence LR Search for genes based on long-read RNASeq evidence internal +searchCategory-longreadspan longreadspan Long Read Span Evidence LR Search for genomic segments based on long-read RNASeq evidence internal +searchCategory-phenotype-curated http://edamontology.org/topic_3298 Phenomics curated-phenotype Curated Phenotype CP Search for genes based on curated phenotype data sets internal +searchCategory-association-to-genomic-segments http://edamontology.org/topic_3298 Phenomics association-to-genomic-segments Association to Genomic Segments AGS Search for genes which are associated to genomic segments by eQTL internal +searchCategory-similarity-of-association http://edamontology.org/topic_3298 Phenomics similarity-of-association Similarity of Association SA Search for genes by similarity of association. internal +searchCategory-T-test-2-sample-unequal-variance http://edamontology.org/topic_0804 immunoproteins,genes,antigens Limma Volcano Limma Volcano LIMV Search for genes based on differential protein abundance calculated by Limma, visualised with a volcano plot internal +searchCategory-putative-function http://edamontology.org/topic_3298 Phenomics putative-function Putative Function PF Search for genes based on comparisons of RNAi target sequencing coverage. internal +searchCategory-eqtl-similarity http://edamontology.org/topic_3298 Phenomics eqtl-similarity Similarity S Search for genes which have a similar profile for an experiment. internal +searchCategory-similarity http://edamontology.org/topic_3308 Transcriptomics similarity Similarity S Search for genes which have a similar profile for an experiment. internal +searchCategory-proteomics-quantitative-ratio http://edamontology.org/topic_0121 Proteomics proteomics-quantitative-ratio Quantitative Ratio QR Search for genes which are differentiated by log2 ratio of heavy to light to determine confidence Log2(H/L). internal +searchCategory-proteomics-direct-comparison http://edamontology.org/topic_0121 Proteomics proteomics-direct-comparison Direct Comparison DC Search for genes which are differentially expressed in a 2 state direct comparison. internal +searchCategory-functional-gene-list http://edamontology.org/topic_1775 Function prediction functional-gene-list Gene List GL Search for genes which were included in a gene list. internal +searchCategory-subcellular-gene-list http://edamontology.org/topic_0140 Protein targeting and localization subcellular-gene-list Gene List GL Search for genes which were included in a gene list. internal +searchCategory-proteomics-direct-conf-comparison http://edamontology.org/topic_0121 Proteomics proteomics-direct-conf-comparison Direct Confidence Comparison DCC Search for genes which are differentially expressed in a 2 state direct comparison with confidence. internal +searchCategory-transcriptomics-direct-comparison http://edamontology.org/topic_3308 Transcriptomics transcriptomics-direct-comparison Direct Comparison DC Search for genes which are differentially expressed in a 2 state direct comparison. internal +searchCategory-coexpression http://edamontology.org/topic_3308 Transcriptomics coexpression Coexpression C Search for genes which have positive or negative correlations with a set of genes. internal +searchCategory-splice-site-loc http://edamontology.org/topic_3308 Transcriptomics splice-site-loc Splice Site Loc SSL Search for genes near experimental splice site locations. internal +searchCategory-proteomics-percentile http://edamontology.org/topic_0121 Proteomics proteomics-percentile Percentile P Search for genes based on the rank of expression w/in an experiment. internal +searchCategory-transcriptomics-percentile http://edamontology.org/topic_3308 Transcriptomics transcriptomics-percentile Percentile P Search for genes based on the rank of expression w/in an experiment. internal +searchCategory-transcriptomics-metacycle http://edamontology.org/topic_3308 Transcriptomics transcriptomics-metacycle MetaCycle MC Search for genes based on MetaCycle methods internal +searchCategory-transcriptomics-iterativeWGCNA http://edamontology.org/topic_3308 Transcriptomics transcriptomics-iterativeWGCNA WGCNA W Search for genes based on iterativeWGCNA methods internal +searchCategory-metabolomics-fold-change http://edamontology.org/topic_3172 Metabolomics metabolomics-fold-change Fold Change FC Search for compounds which are differentially expressed between two sets of samples internal + +searchCategory-interactions http://edamontology.org/topic_0602 interactions and pathways GenesByY2hInteractions Interactions I Search for genes for interactions. internal + +searchCategory-chipchip http://edamontology.org/topic_3173 Epigenomics GenesByChIPchip chip-chip CC Search for genes with evidence for expression based on ChIP-chip peaks. internal + +searchCategory-metabolomics-percentile http://edamontology.org/topic_3172 Metabolomics metabolomics-percentile Percentile P Search for compounds which are differentially expressed between two sets of samples internal + + + +searchCategory-proteomics-fold-change http://edamontology.org/topic_0121 Proteomics proteomics-fold-change Fold Change FC Search for genes which are differentially expressed between two sets of samples. internal +searchCategory-transcriptomics-fold-change http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-change Fold Change FC Search for genes which are differentially expressed between two sets of samples. A set can have only one sample. This is an arithmetic calculation and no statistical significance is provided. internal + +searchCategory-transcriptomics-sense-antisense http://edamontology.org/topic_3308 Transcriptomics transcriptomics-sense-antisense SenseAntisense SA Search for genes that exhibit patterns of sense and antisense transcript expression between two sets of samples. This search is available for RNA seq datasets where read directionality (strandedness) was determined. internal +searchCategory-proteomics-fold-difference http://edamontology.org/topic_0121 Proteomics proteomics-fold-difference Fold Difference FD Search for genes which are different between two sets of samples. internal +searchCategory-transcriptomics-fold-difference http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-difference Fold Difference FD Search for genes which are different between two sets of samples. internal +searchCategory-fold-change-with-pvalue http://edamontology.org/topic_3308 Transcriptomics fold-change-with-pvalue Fold Change with pValue FCpV Search for genes which are differentially expressed between 2 samples. Fishers Exact Test p values for each gene/sample comparison were precomputed. internal +searchCategory-proteomics-fold-change-with-confidence http://edamontology.org/topic_0121 Proteomics proteomics-fold-change-with-confidence Fold Change with Confidence FCC Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates. internal +searchCategory-transcriptomics-fold-change-with-confidence http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-change-with-confidence Fold Change with Confidence FCC Search for genes which are differentially expressed between 2 samples. PaGE Confidence values for each gene/sample comparison were precomputed using all biological replicates. internal +searchCategory-proteomics-fold-change-with-fdr http://edamontology.org/topic_0121 Proteomics proteomics-fold-change-with-fdr Fold Change with FDR FCF Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates. internal +searchCategory-transcriptomics-differential-expression http://edamontology.org/topic_3308 Transcriptomics transcriptomics-differential_expression Differential Expression DE Search for genes that are differentially expressed between 2 samples with at least 2 biological replicates each. Adjusted p-values for each gene/sample were pre-computed using DESeq. internal +searchCategory-transcriptomics-fold-change-with-fdr http://edamontology.org/topic_3308 Transcriptomics transcriptomics-fold-change-with-fdr Fold Change with FDR FCF Search for genes which are differentially expressed between 2 samples. False Discovery Rates for each gene/sample comparison were precomputed using all biological replicates. internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesInGlycosomeProteome searchCategory-proteomics-quantitative-ratio TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesInGlycosomeProteome internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeText searchCategory-phenotype-text TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotypeText internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotypeTextTbrucei searchCategory-phenotype-text TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotypeTextTbrucei internal + webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_GeneImage_NAFeaturePhenotypeImage_RSRC internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_PHI-base_curated_phenotype_NAFeaturePhenotypeGeneric_RSRC internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_ncraOR74A_phenotype_knockout_mutants_RSRC internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC searchCategory-phenotype-curated TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_pberANKA_phenotype_Bushnell_functional_profiling_RSRC internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_Segments searchCategory-association-to-genomic-segments TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEQTL_Segments internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity searchCategory-similarity Transcriptomics TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByProfileSimilarity internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEQTL_HaploGrpSimilarity searchCategory-similarity-of-association TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEQTL_HaploGrpSimilarity internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByICEMRHostResponse searchCategory-T-test-2-sample-unequal-variance TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByICEMRHostResponse internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection searchCategory-T-test-2-sample-unequal-variance TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByAntibodyArraypfal3D7_microarrayAntibody_Loffler_Natural_Infection internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByToxoProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByToxoProfileSimilarity internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByProfileSimilarity internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByEqtlProfileSimilarity searchCategory-eqtl-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByEqtlProfileSimilarity internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGametocyteProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGametocyteProfileSimilarity internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCryptoRtpcrProfileSimilarity searchCategory-similarity TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCryptoRtpcrProfileSimilarity internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRtPcrFoldChange searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRtPcrFoldChange internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGH searchCategory-fold-difference TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCortesCGH internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByCortesCGHCrossStrain searchCategory-fold-difference TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByCortesCGHCrossStrain internal webservice +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByName http://edamontology.org/topic_0199 Genetic Variation RflpIsolateRecordClasses.RflpIsolateRecordClass search RflpIsolateQuestions.ByName menu webservice +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.BySampleDetails http://edamontology.org/topic_0199 Genetic Variation RflpIsolateRecordClasses.RflpIsolateRecordClass search RflpIsolateQuestions.BySampleDetails menu webservice +RflpIsolateRecordClasses.RflpIsolateRecordClass.RflpIsolateQuestions.ByGenotypeNumber http://edamontology.org/topic_0199 Genetic Variation RflpIsolateRecordClasses.RflpIsolateRecordClass search RflpIsolateQuestions.ByGenotypeNumber menu +## TEMPLATE_ANCHOR internalGeneSearchCategory +## TEMPLATE_ANCHOR internalSpanSearchCategory + + + + +## ToxoDB Chip + + + + +rtpcr_graph DatasetRecordClasses.DatasetRecordClass.DS_2bf995383e TranscriptRecordClasses.TranscriptRecordClass attribute rtpcr_graph gene results + + +tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 TranscriptRecordClasses.TranscriptRecordClass attribute tbruTREU927_RNAi_Horn_rnaSeq_RSRC_expr_graph gene results + + download +prob_MAP DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute prob_MAP gene results + download +prob_MCMC DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute prob_MCMC gene results + download +MAP_location DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute MAP_location gene results + download +MCMC_location DatasetRecordClasses.DatasetRecordClass.DS_eda79f81b5 TranscriptRecordClasses.TranscriptRecordClass attribute MCMC_location gene results + + +quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from the CDS Sequence 1 internal download +TranscriptRecordClasses.TranscriptRecordClass.no_tet_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute no_tet_cds transcript 1 results download +TranscriptRecordClasses.TranscriptRecordClass.bfd3_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd3_cds transcript 2 results download +TranscriptRecordClasses.TranscriptRecordClass.bfd6_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd6_cds transcript 3 results download +TranscriptRecordClasses.TranscriptRecordClass.pf_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute pf_cds transcript 4 results download +TranscriptRecordClasses.TranscriptRecordClass.dif_cds quantFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute dif_cds transcript 5 results + +foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from the CDS Sequence - Fold-Change 2 internal download +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd3_cds transcript 1 results download +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd6_cds transcript 2 results download +TranscriptRecordClasses.TranscriptRecordClass.fc_pf_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_pf_cds transcript 3 results download +TranscriptRecordClasses.TranscriptRecordClass.fc_dif_cds foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_dif_cds transcript 4 results + +quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from gene model (5 prime UTR + CDS) 3 internal download +TranscriptRecordClasses.TranscriptRecordClass.no_tet_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute no_tet_model transcript 1 results download +TranscriptRecordClasses.TranscriptRecordClass.bfd3_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd3_model transcript 2 results download +TranscriptRecordClasses.TranscriptRecordClass.bfd6_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute bfd6_model transcript 3 results download +TranscriptRecordClasses.TranscriptRecordClass.pf_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute pf_model transcript 4 results download +TranscriptRecordClasses.TranscriptRecordClass.dif_model quantFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute dif_model transcript 5 results + +foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC DatasetRecordClasses.DatasetRecordClass.DS_98fb258539 foldChangeFromCdsSeqs_tbruTREU927_RNAi_Horn_rnaSeq_RSRC Quantitated from gene model (5 prime UTR + CDS) - Fold-Change 4 internal download +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd3_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd3_model transcript 1 results download +TranscriptRecordClasses.TranscriptRecordClass.fc_bfd6_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_bfd6_model transcript 2 results download +TranscriptRecordClasses.TranscriptRecordClass.fc_pf_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_pf_model transcript 3 results download +TranscriptRecordClasses.TranscriptRecordClass.fc_dif_model foldChangeFromGenes_tbruTREU927_RNAi_Horn_rnaSeq_RSRC TranscriptRecordClasses.TranscriptRecordClass attribute fc_dif_model transcript 4 results + +mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph DatasetRecordClasses.DatasetRecordClass.DS_4585d065bf TranscriptRecordClasses.TranscriptRecordClass attribute mmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC_parasitemia_graph gene results + +pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph DatasetRecordClasses.DatasetRecordClass.DS_c35d971a20 TranscriptRecordClasses.TranscriptRecordClass attribute pcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC_parasitemia_graph gene results + webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRC internal + webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile searchCategory-transcriptomics-percentile TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqmmulAG07107_Galinski_Mmulatta_Infected_with_Pcynomolgi_ebi_rnaSeq_RSRCPercentile internal + webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRC internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense searchCategory-transcriptomics-sense-antisense TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCSenseAntisense internal + webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile searchCategory-transcriptomics-percentile TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqpcynM_Galinski_infected_Mmulatta_rnaSeq_RSRCPercentile internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.genesByRNASeqUserDataset searchCategory-transcriptomics-fold-change TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.genesByRNASeqUserDataset internal webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacyclmics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqMetaCycletbruTREU927_Rijo_Circadian_Regulation_ebi_rnaSeq_RSRC internal + + webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC searchCategory-transcriptomics-metacyclmics-metacycle TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByRNASeqMetaCyclencraOR74A_Bharath_Circadian_Time_Course_ebi_rnaSeq_RSRC internal + + + + + webservice +OrganismRecordClasses.OrganismRecordClass.OrganismQuestions.GenomeDataTypes http://edamontology.org/topic_0637 organism OrganismRecordClasses.OrganismRecordClass search OrganismQuestions.GenomeDataTypes menu + +FileRecordClasses.FileRecordClass.data_type http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute data_type 1 results +FileRecordClasses.FileRecordClass.file_format http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute file_format 2 results +FileRecordClasses.FileRecordClass.filesize_text http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute filesize_text 3 results record-internal +FileRecordClasses.FileRecordClass.filesize http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute filesize 3 record-internal download +FileRecordClasses.FileRecordClass.organism http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute organism 4 results +FileRecordClasses.FileRecordClass.build_num http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute build_num 5 results +FileRecordClasses.FileRecordClass.filename http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute filename 6 results +FileRecordClasses.FileRecordClass.category http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute category 1 results +FileRecordClasses.FileRecordClass.file_type http://www.w3.org/2002/07/owl#Thing thing FileRecordClasses.FileRecordClass attribute file_type 1 results + +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.GenomicSpanByLongReadEvidence DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.GenomicSpanByLongReadEvidence menu webservice +DynSpanRecordClasses.DynSpanRecordClass.SpanQuestions.IntronJunctionDynamicSearch DynSpanRecordClasses.DynSpanRecordClass search SpanQuestions.IntronJunctionDynamicSearch menu + +TranscriptRecordClasses.TranscriptRecordClass.InternalGeneDatasetQuestions.GenesByLongReadEvidence http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search InternalGeneDatasetQuestions.GenesByLongReadEvidence menu + + +JbrowseRecordClasses.JbrowseGeneRecordClass.link http://edamontology.org/topic_3345 Data identity and mapping JbrowseRecordClasses.JbrowseGeneRecordClass attribute link gene record +JbrowseRecordClasses.JbrowseGeneRecordClass.product http://edamontology.org/topic_0219 Curation and Annotation JbrowseRecordClasses.JbrowseGeneRecordClass attribute product gene record +JbrowseRecordClasses.JbrowseGeneRecordClass.organism http://edamontology.org/topic_0637 Taxonomy JbrowseRecordClasses.JbrowseGeneRecordClass attribute organism gene record +JbrowseRecordClasses.JbrowseGeneRecordClass.name http://edamontology.org/topic_0219 Curation and Annotation JbrowseRecordClasses.JbrowseGeneRecordClass attribute name gene record +JbrowseRecordClasses.JbrowseGeneRecordClass.orthomcl_link http://edamontology.org/topic_3299 Evolutionary Biology JbrowseRecordClasses.JbrowseGeneRecordClass attribute orthomcl_link gene record +JbrowseRecordClasses.JbrowseGeneRecordClass.so_term_name http://edamontology.org/topic_1775 GenomicSequenceLocationCategory JbrowseRecordClasses.JbrowseGeneRecordClass attribute so_term_name gene record +JbrowseRecordClasses.JbrowseGeneRecordClass.location_text GenomicSequenceLocationCategory Function analysis JbrowseRecordClasses.JbrowseGeneRecordClass attribute location_text gene record + + +JbrowseRecordClasses.JbrowseGeneRecordClass.GOTerms http://edamontology.org/topic_1775 Function analysis JbrowseRecordClasses.JbrowseGeneRecordClass table GOTerms transcript record +JbrowseRecordClasses.Jbrowse.GeneRecordClass.GeneTranscripts http://edamontology.org/topic_0114 Gene Structure JbrowseRecordClasses.JbrowseGeneRecordClass table GeneTranscripts gene record + From b7b8044e91acead0d7caaca25ba3347d2476faf4 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Wed, 29 Apr 2026 07:00:12 -0400 Subject: [PATCH 59/64] Add ontology entry, tab separated this time! --- Model/lib/wdk/ontology/individuals.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index 8d3a2aa60..545830e6d 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -75,6 +75,7 @@ TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneType http TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByIntronJunctions http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByIntronJunctions menu webservice TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGeneModelChars http://edamontology.org/topic_0114 Gene Structure TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGeneModelChars menu webservice TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByGoTerm http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByGoTerm menu webservice +TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesBySecondaryMetabolites http://edamontology.org/topic_1775 Function analysis TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesBySecondaryMetabolites menu webservice ## TEMPLATE_ANCHOR geneImageGoTermOntology TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_QIAGEN_RSRC webservice TranscriptRecordClasses.TranscriptRecordClass.GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC searchCategory-phenotype-curated phenotype TranscriptRecordClasses.TranscriptRecordClass search GeneQuestions.GenesByPhenotype_phenotype_DATA_RSRC webservice From faf6e55ee076a18650ded8f327cafa077fe83760 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Wed, 29 Apr 2026 09:34:26 -0400 Subject: [PATCH 60/64] Add gene page table for antismash --- Model/lib/wdk/model/records/geneRecord.xml | 12 +++++++ .../wdk/model/records/geneTableQueries.xml | 32 +++++++++++++++++++ 2 files changed, 44 insertions(+) diff --git a/Model/lib/wdk/model/records/geneRecord.xml b/Model/lib/wdk/model/records/geneRecord.xml index af8f7b216..a07850cea 100644 --- a/Model/lib/wdk/model/records/geneRecord.xml +++ b/Model/lib/wdk/model/records/geneRecord.xml @@ -3174,6 +3174,18 @@ name" internal="true"/> + + + + + + +
+ diff --git a/Model/lib/wdk/model/records/geneTableQueries.xml b/Model/lib/wdk/model/records/geneTableQueries.xml index 309b2a94b..8017f7d51 100644 --- a/Model/lib/wdk/model/records/geneTableQueries.xml +++ b/Model/lib/wdk/model/records/geneTableQueries.xml @@ -4849,5 +4849,37 @@ FROM webready.GeneAttributes_p ga, ( + + + + + + + + + + + + + From 3d00f6cf76a0b55ed400e0b8c63f455f1d6690ca Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Wed, 29 Apr 2026 09:35:00 -0400 Subject: [PATCH 61/64] Add ontology for antismash table --- Model/lib/wdk/ontology/individuals.txt | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index 545830e6d..e437e0dc4 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -236,7 +236,8 @@ GeneRecordClasses.GeneRecordClass.specialJbrowseUrl http://edamontology.org/topi GeneRecordClasses.GeneRecordClass.ExpressionGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ExpressionGraphsDataTable gene record-internal GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table UserDatasetsTranscriptomicsGraphsDataTable gene record-internal GeneRecordClasses.GeneRecordClass.FacetMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FacetMetadata gene record-internal -GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FungiVBOrgLinkoutsTable gene record-internal +GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FungiVBOrgLinkoutsTable gene record-internal +GeneRecordClasses.GeneRecordClass.AntiSmashClusters http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table AntiSmashClusters gene record GeneRecordClasses.GeneRecordClass.ContXAxisMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ContXAxisMetadata gene record-internal GeneRecordClasses.GeneRecordClass.ai_expression http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute ai_expression gene 2 record From 7fce3d495cf88d2a4cbc2d452ceca6ff5ffee2f9 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Wed, 29 Apr 2026 10:23:12 -0400 Subject: [PATCH 62/64] Change name to secondary metabolites to match search. Fixes to ontology --- Model/lib/wdk/model/records/geneRecord.xml | 4 ++-- Model/lib/wdk/model/records/geneTableQueries.xml | 2 +- Model/lib/wdk/ontology/individuals.txt | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/Model/lib/wdk/model/records/geneRecord.xml b/Model/lib/wdk/model/records/geneRecord.xml index a07850cea..00d5e450e 100644 --- a/Model/lib/wdk/model/records/geneRecord.xml +++ b/Model/lib/wdk/model/records/geneRecord.xml @@ -3174,11 +3174,11 @@ name" internal="true"/> - + queryRef="GeneTables.SecondaryMetaboliteClusters"> diff --git a/Model/lib/wdk/model/records/geneTableQueries.xml b/Model/lib/wdk/model/records/geneTableQueries.xml index 8017f7d51..8f8ac9d61 100644 --- a/Model/lib/wdk/model/records/geneTableQueries.xml +++ b/Model/lib/wdk/model/records/geneTableQueries.xml @@ -4849,7 +4849,7 @@ FROM webready.GeneAttributes_p ga, ( - + diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index e437e0dc4..4292f86db 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -237,7 +237,7 @@ GeneRecordClasses.GeneRecordClass.ExpressionGraphsDataTable http://edamontology. GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table UserDatasetsTranscriptomicsGraphsDataTable gene record-internal GeneRecordClasses.GeneRecordClass.FacetMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FacetMetadata gene record-internal GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FungiVBOrgLinkoutsTable gene record-internal -GeneRecordClasses.GeneRecordClass.AntiSmashClusters http://edamontology.org/topic_0753 Metabolic Pathways GeneRecordClasses.GeneRecordClass table AntiSmashClusters gene record +GeneRecordClasses.GeneRecordClass.SecondaryMetaboliteClusters http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table SecondaryMetaboliteClusters transcript record download GeneRecordClasses.GeneRecordClass.ContXAxisMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ContXAxisMetadata gene record-internal GeneRecordClasses.GeneRecordClass.ai_expression http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute ai_expression gene 2 record From e714c84159795f18c328e4805403bacbdc578506 Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Wed, 29 Apr 2026 13:35:56 -0400 Subject: [PATCH 63/64] Change ontology to gene scope --- Model/lib/wdk/ontology/individuals.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Model/lib/wdk/ontology/individuals.txt b/Model/lib/wdk/ontology/individuals.txt index 4292f86db..a0f9e4ec1 100644 --- a/Model/lib/wdk/ontology/individuals.txt +++ b/Model/lib/wdk/ontology/individuals.txt @@ -237,7 +237,7 @@ GeneRecordClasses.GeneRecordClass.ExpressionGraphsDataTable http://edamontology. GeneRecordClasses.GeneRecordClass.UserDatasetsTranscriptomicsGraphsDataTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table UserDatasetsTranscriptomicsGraphsDataTable gene record-internal GeneRecordClasses.GeneRecordClass.FacetMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FacetMetadata gene record-internal GeneRecordClasses.GeneRecordClass.FungiVBOrgLinkoutsTable http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table FungiVBOrgLinkoutsTable gene record-internal -GeneRecordClasses.GeneRecordClass.SecondaryMetaboliteClusters http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table SecondaryMetaboliteClusters transcript record download +GeneRecordClasses.GeneRecordClass.SecondaryMetaboliteClusters http://edamontology.org/topic_1775 Function analysis GeneRecordClasses.GeneRecordClass table SecondaryMetaboliteClusters gene record download GeneRecordClasses.GeneRecordClass.ContXAxisMetadata http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass table ContXAxisMetadata gene record-internal GeneRecordClasses.GeneRecordClass.ai_expression http://edamontology.org/topic_3308 Transcriptomics GeneRecordClasses.GeneRecordClass attribute ai_expression gene 2 record From 2c207f1f9f435d5391f2cfa70430b586a90f654d Mon Sep 17 00:00:00 2001 From: Kathryn Crouch Date: Wed, 29 Apr 2026 13:36:50 -0400 Subject: [PATCH 64/64] Add wdkref for table --- .../apidb/apicommon/model/datasetInjector/AnnotatedGenome.java | 1 + 1 file changed, 1 insertion(+) diff --git a/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java b/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java index 3afbd47e8..e7c2a06d5 100644 --- a/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java +++ b/Model/src/main/java/org/apidb/apicommon/model/datasetInjector/AnnotatedGenome.java @@ -324,6 +324,7 @@ public void addModelReferences() { // FungalGPIForm only for FungiDB if (!(projectName.equals("FungiDB"))){ addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "FungalGPIForm"); + addWdkReference("GeneRecordClasses.GeneRecordClass", "table", "SecondaryMetaboliteClusters"); } // CommunityExpComments for only GiardiaDB and FungiDB