From 22fcb8b63be9a55090dca9f73e8dd683f4ebf320 Mon Sep 17 00:00:00 2001 From: tsmorz Date: Tue, 2 Dec 2025 09:44:06 +0100 Subject: [PATCH 1/4] update uv commands --- .github/workflows/pypi-publish.yml | 43 +++++++++ .pre-commit-config.yaml | 36 ++++--- Dockerfile | 2 +- Makefile | 16 +++- README.md | 30 ++++++ pyproject.toml | 87 +++++++---------- repo_tree.py | 143 ++++++++++++++++++++++++++++ src/exosuit_python/__main__.py | 22 +---- src/exosuit_python/exosuit.py | 19 ++++ tests/main_test.py | 2 +- uv.lock | 147 ++++++++++++++++++++--------- 11 files changed, 410 insertions(+), 137 deletions(-) create mode 100644 .github/workflows/pypi-publish.yml create mode 100644 repo_tree.py create mode 100644 src/exosuit_python/exosuit.py diff --git a/.github/workflows/pypi-publish.yml b/.github/workflows/pypi-publish.yml new file mode 100644 index 0000000..d289e0c --- /dev/null +++ b/.github/workflows/pypi-publish.yml @@ -0,0 +1,43 @@ +name: Publish to PyPI + +on: + push: + tags: + - "v*.*.*" + +permissions: + contents: read + id-token: write # REQUIRED for Trusted Publishing + +jobs: + publish: + runs-on: ubuntu-latest + + steps: + - name: Checkout repository + uses: actions/checkout@v4 + + - name: Install uv + uses: astral-sh/setup-uv@v1 + with: + version: latest + + - name: Sync dependencies (no dev deps needed) + run: uv sync + + - name: Build wheel and sdist + run: uv build --wheel --sdist + + - name: List built artifacts + run: ls -R dist + + - name: Inspect METADATA (optional debug) + run: | + wheel=$(ls dist/*.whl) + unzip -p "$wheel" "$(unzip -l "$wheel" | awk '/METADATA$/ {print $NF}')" || true + + - name: Publish to PyPI (Trusted Publishing) + uses: pypa/gh-action-pypi-publish@release/v1 + with: + packages-dir: dist + verbose: true diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 80e9cde..8baf2e4 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -5,6 +5,9 @@ default_language_version: python: python3.12 repos: +# -------------------------------------------------------- +# Basic hygiene checks (whitespace, yaml, shebangs, etc.) +# -------------------------------------------------------- - repo: https://github.com/pre-commit/pre-commit-hooks rev: v6.0.0 hooks: @@ -16,20 +19,25 @@ repos: - id: name-tests-test - id: requirements-txt-fixer -- repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.18.2 +# -------------------------------------------------------- +# Delegate formatting + linting to your Makefile +# -------------------------------------------------------- +- repo: local hooks: - - id: mypy - args: ["--ignore-missing-imports"] - additional_dependencies: [] - exclude: ^testing/resources/ + - id: make-format + name: Run format (ruff format + ruff lint) + entry: make format + language: system + types: [python] -- repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.14.6 +# -------------------------------------------------------- +# Optional: run tests before commit +# (Often skipped in CI & enabled manually because slow) +# -------------------------------------------------------- +- repo: local hooks: - - id: ruff - types_or: [python, pyi] - args: ["--fix"] - - - id: ruff-format - types_or: [python, pyi] + - id: make-test + name: Run pytest suite + entry: make test + language: system + types: [python] diff --git a/Dockerfile b/Dockerfile index d086f5d..21e7af5 100644 --- a/Dockerfile +++ b/Dockerfile @@ -6,7 +6,7 @@ ENV PYTHONDONTWRITEBYTECODE=1 \ PYTHONUNBUFFERED=1 # Select the package and version at build time -ARG PKG=exosuit_python +ARG PKG=exosuit_python[no_hw] ARG VER=latest ENV PKG=${PKG} VER=${VER} diff --git a/Makefile b/Makefile index 4929928..4d28185 100644 --- a/Makefile +++ b/Makefile @@ -14,7 +14,7 @@ lint: uv run ruff check --fix typecheck: - uv run mypy src/ tests/ --ignore-missing-imports + uv run pyright src format: make lint @@ -29,15 +29,13 @@ clean: rm -rf junit-pytest.xml rm -rf logs/* find . -name ".coverage*" -delete - find . -name "coverage.xml" -delete find . -name "__pycache__" -exec rm -r {} + update: - uv sync --upgrade --all-groups - uv run pre-commit autoupdate + uv lock --upgrade update-deep: - uv cache clean pypi + uv cache clean make update docker: @@ -46,3 +44,11 @@ docker: app: uv run python -m exosuit_python + +tree: + uv run python repo_tree.py --update-readme + +build: + uv build + unzip -l dist/*.whl + unzip -p dist/*.whl */METADATA diff --git a/README.md b/README.md index c69324f..5164906 100644 --- a/README.md +++ b/README.md @@ -49,3 +49,33 @@ if __name__ == "__main__": ```bash uv run python -m exosuit_python ``` + +## Structure + +``` +├── src +│ └── exosuit_python +│ ├── __init__.py +│ ├── __main__.py +│ ├── definitions.py +│ ├── exosuit.py +│ └── utils.py +├── tests +│ ├── __init__.py +│ ├── conftest.py +│ ├── main_test.py +│ └── utils_test.py +├── .dockerignore +├── .gitignore +├── .pre-commit-config.yaml +├── .python-version +├── CONTRIBUTING.md +├── Dockerfile +├── LICENSE +├── Makefile +├── README.md +├── pyproject.toml +├── repo_tree.py +└── uv.lock +``` + diff --git a/pyproject.toml b/pyproject.toml index f9b8680..c85e10b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,23 +1,30 @@ [project] -name = "exosuit-python" +name = "exosuit_python" version = "0.0.2" -description = "Python-based lower limb exosuit" +description = "IMU sensor codes in Python for the exosuit" readme = "README.md" authors = [{ name = "Tsmorz", email = "tony.smoragiewicz@tum.de" }] requires-python = ">=3.11,<3.14" +# --- Core dependencies: NO hardware here --- dependencies = [ - "numpy>=2.2.3", - "loguru>=0.7.3", + "numpy>=2.2.3", + "loguru>=0.7.3", ] + [dependency-groups] dev = [ - "ruff>=0.6.9", - "mypy>=1.11", - "pytest>=8.3", - "pytest-cov>=6.0", - "pre-commit>=4.1.0", - "coveralls>=4.0.1", + "ruff>=0.6.9", + "mypy>=1.11", + "pytest>=8.3", + "pytest-cov>=6.0", + "pre-commit>=4.1.0", + "coveralls>=4.0.1", + "pyright>=1.1.407", +] +hw = [ +] +no_hw = [ ] [project.urls] @@ -25,62 +32,40 @@ homepage = "https://github.com/TUM-Aries-Lab/exosuit-python" [tool.ruff] line-length = 88 +fix = true lint.select = [ - "E", # pycodestyle (style errors) - "F", # Pyflakes (logical errors) - "W", # Warnings - "C90", # mccabe (complexity checks) - "I", # isort (import sorting) - "N", # pep8-naming (naming conventions) - "D", # pydocstyle (docstring conventions) - "UP", # pyupgrade (Python syntax modernization) - "B", # flake8-bugbear (common pitfalls and performance issues) - "S", # flake8-bandit (security issues) - "YTT", # flake8-2020 (Python 2 compatibility issues) - "Q", # flake8-quotes (quote consistency) - "PL", # pylint (general best practices) - "RUF", # Ruff-specific rules - "T20", - "F841", # unused variable - "ERA001" # commented out code + "E","F","W","C90","I","N","D","UP","B","S","YTT","Q","PL","RUF","T20","F841","ERA001", ] lint.ignore = [ - "D203", - "D213", - "E501", - "N803", - "N806", - "D415", - "S101", - "E203", - "E731", - "D107", - "PLR2004", - "S607", - "S605", - "S603", + "D203","D213","E501","N803","N806","D415","S101","E203","E731", + "D107","PLR2004","S607","S605","S603", ] -fix = true - [tool.ruff.lint.isort] -known-first-party = ["exosuit-python"] +known-first-party = ["exosuit_python"] combine-as-imports = true -[tool.lint.pydocstyle] -convention = "google" - [tool.ruff.format] quote-style = "double" indent-style = "space" line-ending = "lf" -# ------------------------- -# BUILD SYSTEM -# ------------------------- -# UV uses hatchling by default; Poetry build backend removed. [build-system] requires = ["hatchling"] build-backend = "hatchling.build" + +[tool.hatch.metadata] +allow-direct-references = true + +# Tell hatchling where the package lives (src layout) +[tool.hatch.build.targets.wheel] +packages = ["src/exosuit_python"] + +[tool.hatch.build.targets.sdist] +include = [ + "src/exosuit_python", + "README.md", + "LICENSE", +] diff --git a/repo_tree.py b/repo_tree.py new file mode 100644 index 0000000..842ff88 --- /dev/null +++ b/repo_tree.py @@ -0,0 +1,143 @@ +#!/usr/bin/env python3 +"""Generate a Markdown tree of the project directory. + +Usage: + python repo_tree.py + python repo_tree.py --update-readme +""" + +from __future__ import annotations + +import argparse +import fnmatch +from pathlib import Path + +from loguru import logger + +START_MARKER = "" +END_MARKER = "" +ENCODING = "utf-8" + +# Manual ignores are still allowed +MANUAL_IGNORE = { + ".git", + ".venv", + "__pycache__", + ".mypy_cache", + ".pytest_cache", + ".ruff_cache", + ".DS_Store", + "data", + "simulink", + ".github", +} + + +def load_gitignore_patterns(path: Path) -> list[str]: + """Load patterns from .gitignore.""" + gitignore = path / ".gitignore" + if not gitignore.exists(): + return [] + + patterns: list[str] = [] + for line in gitignore.read_text().splitlines(): + line_str = line.strip() + if not line_str or line_str.startswith("#"): + continue + patterns.append(line_str) + return patterns + + +def is_ignored(path: Path, patterns: list[str]) -> bool: + """Return True if path matches any ignore pattern. + + Supports: + - literal names + - wildcard patterns + - directory patterns (e.g. logs/) + """ + name = path.name + + # Manual ignores first + if name in MANUAL_IGNORE: + return True + + for pattern in patterns: + # Directory ignore + if pattern.endswith("/") and path.is_dir(): + if fnmatch.fnmatch(name + "/", pattern): + return True + + # File/directory wildcard + if fnmatch.fnmatch(name, pattern): + return True + + return False + + +def build_tree(path: Path, patterns: list[str], prefix: str = "") -> list[str]: + """Recursively build a tree representation.""" + entries = sorted( + [p for p in path.iterdir() if not is_ignored(p, patterns)], + key=lambda x: (x.is_file(), x.name), + ) + + lines: list[str] = [] + + for i, entry in enumerate(entries): + connector = "└── " if i == len(entries) - 1 else "├── " + + lines.append(f"{prefix}{connector}{entry.name}") + + if entry.is_dir(): + extension = " " if i == len(entries) - 1 else "│ " + lines.extend(build_tree(entry, patterns, prefix + extension)) + + return lines + + +def generate_markdown_tree() -> str: + """Return the full markdown tree as a formatted code block.""" + root = Path(".").resolve() + + gitignore_patterns = load_gitignore_patterns(root) + tree_lines = build_tree(root, gitignore_patterns) + tree_text = "\n".join(tree_lines) + + return f"```\n{tree_text}\n```" + + +def update_readme_block(readme_path: Path) -> None: + """Replace the section between markers with the generated tree.""" + readme = readme_path.read_text(encoding=ENCODING).splitlines() + + if START_MARKER not in readme or END_MARKER not in readme: + raise RuntimeError( + f"README.md must contain '{START_MARKER}' and '{END_MARKER}' markers." + ) + + start = readme.index(START_MARKER) + 1 + end = readme.index(END_MARKER) + + tree = generate_markdown_tree().splitlines() + + new_readme = readme[:start] + tree + readme[end:] + readme_path.write_text("\n".join(new_readme), encoding=ENCODING) + + logger.success("README updated with latest repo tree (gitignored files excluded).") + + +def main() -> None: + """Create a Markdown tree of the project directory.""" + parser = argparse.ArgumentParser() + parser.add_argument("--update-readme", action="store_true") + args = parser.parse_args() + + if args.update_readme: + update_readme_block(Path("README.md")) + else: + logger.info(generate_markdown_tree()) + + +if __name__ == "__main__": + main() diff --git a/src/exosuit_python/__main__.py b/src/exosuit_python/__main__.py index c6a7aef..57d0396 100644 --- a/src/exosuit_python/__main__.py +++ b/src/exosuit_python/__main__.py @@ -2,28 +2,8 @@ import argparse -from loguru import logger - from exosuit_python.definitions import DEFAULT_LOG_LEVEL, LogLevel -from exosuit_python.utils import setup_logger - - -def main( - log_level: str = DEFAULT_LOG_LEVEL, stderr_level: str = DEFAULT_LOG_LEVEL -) -> None: - """Run the main pipeline. - - :param log_level: The log level to use. - :param stderr_level: The std err level to use. - :return: None - """ - setup_logger(log_level=log_level, stderr_level=stderr_level) - logger.info("Hello, world!") - - logger.debug("This is Hannes") - - logger.info("Haoqing Yang") - +from exosuit_python.exosuit import main if __name__ == "__main__": # pragma: no cover parser = argparse.ArgumentParser("Run the pipeline.") diff --git a/src/exosuit_python/exosuit.py b/src/exosuit_python/exosuit.py new file mode 100644 index 0000000..8605833 --- /dev/null +++ b/src/exosuit_python/exosuit.py @@ -0,0 +1,19 @@ +"""Sample doc string.""" + +from loguru import logger + +from exosuit_python.definitions import DEFAULT_LOG_LEVEL +from exosuit_python.utils import setup_logger + + +def main( + log_level: str = DEFAULT_LOG_LEVEL, stderr_level: str = DEFAULT_LOG_LEVEL +) -> None: + """Run the main pipeline. + + :param log_level: The log level to use. + :param stderr_level: The std err level to use. + :return: None + """ + setup_logger(log_level=log_level, stderr_level=stderr_level) + logger.info("Hello, world!") diff --git a/tests/main_test.py b/tests/main_test.py index 4ea5946..e003333 100644 --- a/tests/main_test.py +++ b/tests/main_test.py @@ -1,6 +1,6 @@ """Test the main program.""" -from exosuit_python.__main__ import main +from exosuit_python.exosuit import main def test_main(): diff --git a/uv.lock b/uv.lock index 839b560..563d898 100644 --- a/uv.lock +++ b/uv.lock @@ -195,6 +195,7 @@ dev = [ { name = "coveralls" }, { name = "mypy" }, { name = 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10:39:28 +0100 Subject: [PATCH 2/4] v0.0.2a1 --- pyproject.toml | 2 +- src/exosuit_python/__init__.py | 2 ++ uv.lock | 2 +- 3 files changed, 4 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index c85e10b..4f770ce 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "exosuit_python" -version = "0.0.2" +version = "0.0.2a1" description = "IMU sensor codes in Python for the exosuit" readme = "README.md" authors = [{ name = "Tsmorz", email = "tony.smoragiewicz@tum.de" }] diff --git a/src/exosuit_python/__init__.py b/src/exosuit_python/__init__.py index a22f654..0d878b7 100644 --- a/src/exosuit_python/__init__.py +++ b/src/exosuit_python/__init__.py @@ -1 +1,3 @@ """Sample doc string.""" + +__version__ = "0.0.2a1" diff --git a/uv.lock b/uv.lock index 563d898..d0c9ab7 100644 --- a/uv.lock +++ b/uv.lock @@ -183,7 +183,7 @@ sdist = { url = "https://files.pythonhosted.org/packages/a2/55/8f8cab2afd404cf57 [[package]] name = "exosuit-python" -version = "0.0.2" +version = "0.0.2a1" source = { editable = "." } dependencies = [ { name = "loguru" }, From 3b57334f8514c1bf4bfb18c0456c140259db0c91 Mon Sep 17 00:00:00 2001 From: tsmorz Date: Tue, 2 Dec 2025 10:47:45 +0100 Subject: [PATCH 3/4] fix readme typo --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 5164906..65d7c8a 100644 --- a/README.md +++ b/README.md @@ -8,11 +8,11 @@ This repo is the main codebase to run the lower-limb exosuit on a single board c To install the library run: ```bash -uv pip install python-exosuit==latest +uv pip install exosuit-python==latest ``` OR ```bash -uv add git+https://github.com/TUM-Aries-Lab/python-exosuit.git@ # need credentials +uv add git+https://github.com/TUM-Aries-Lab/exosuit-python.git@ # need credentials ``` ## Development From 7ce5ac98c1089879dc318fb917bc1be38156c3a0 Mon Sep 17 00:00:00 2001 From: tsmorz Date: Tue, 2 Dec 2025 10:58:57 +0100 Subject: [PATCH 4/4] v0.0.2 --- README.md | 9 +++++---- pyproject.toml | 2 +- src/exosuit_python/__init__.py | 2 +- tests/{main_test.py => exosuit_test.py} | 0 uv.lock | 2 +- 5 files changed, 8 insertions(+), 7 deletions(-) rename tests/{main_test.py => exosuit_test.py} (100%) diff --git a/README.md b/README.md index 65d7c8a..963ffcc 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ [![Coverage Status](https://coveralls.io/repos/github/TUM-Aries-Lab/exosuit-python/badge.svg?branch=main)](https://coveralls.io/github/TUM-Aries-Lab/exosuit-python?branch=main) ![Docker Image CI](https://github.com/TUM-Aries-Lab/exosuit-python/actions/workflows/ci.yml/badge.svg) -This repo is the main codebase to run the lower-limb exosuit on a single board computer like the Jetson Nano. +This repo is the main codebase to run the lower-limb exosuit on a single board computer like the Jetson Nano or Raspberry Pi. ## Install To install the library run: @@ -16,7 +16,7 @@ uv add git+https://github.com/TUM-Aries-Lab/exosuit-python.git@ # ``` ## Development -0. Install [uv](https://docs.astral.sh/uv/getting-started/installation/) from Astral. +0. Install [**uv**](https://docs.astral.sh/uv/getting-started/installation/) from Astral. 1. `git clone git@github.com:TUM-Aries-Lab/exosuit-python.git` 2. Install the dependencies to use Makefiles. 3. `make init` to create the virtual environment and install dependencies @@ -31,7 +31,7 @@ It's super easy to publish your own packages on PyPI. To build and publish this uv build uv publish # make sure your version in pyproject.toml is updated ``` -The package can then be found at: https://pypi.org/project/exosuit-python +The package can then be found at: **https://pypi.org/project/exosuit-python** ## Module Usage ```python @@ -51,6 +51,7 @@ uv run python -m exosuit_python ``` ## Structure +Run `make tree` to update the repository tree scene below. ``` ├── src @@ -63,7 +64,7 @@ uv run python -m exosuit_python ├── tests │ ├── __init__.py │ ├── conftest.py -│ ├── main_test.py +│ ├── exosuit_test.py │ └── utils_test.py ├── .dockerignore ├── .gitignore diff --git a/pyproject.toml b/pyproject.toml index 4f770ce..c85e10b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [project] name = "exosuit_python" -version = "0.0.2a1" +version = "0.0.2" description = "IMU sensor codes in Python for the exosuit" readme = "README.md" authors = [{ name = "Tsmorz", email = "tony.smoragiewicz@tum.de" }] diff --git a/src/exosuit_python/__init__.py b/src/exosuit_python/__init__.py index 0d878b7..da05e3c 100644 --- a/src/exosuit_python/__init__.py +++ b/src/exosuit_python/__init__.py @@ -1,3 +1,3 @@ """Sample doc string.""" -__version__ = "0.0.2a1" +__version__ = "0.0.2" diff --git a/tests/main_test.py b/tests/exosuit_test.py similarity index 100% rename from tests/main_test.py rename to tests/exosuit_test.py diff --git a/uv.lock b/uv.lock index d0c9ab7..563d898 100644 --- a/uv.lock +++ b/uv.lock @@ -183,7 +183,7 @@ sdist = { url = "https://files.pythonhosted.org/packages/a2/55/8f8cab2afd404cf57 [[package]] name = "exosuit-python" -version = "0.0.2a1" +version = "0.0.2" source = { editable = "." } dependencies = [ { name = "loguru" },