Deploying to r-dev from @ 36d59c3 🚀

Author: andrewherren

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: stochtree
 Title: Stochastic Tree Ensembles (XBART and BART) for Supervised Learning and Causal Inference
-Version: 0.1.1
+Version: 0.2.0
 Authors@R: 
   c(
     person("Drew", "Herren", email = "drewherrenopensource@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4109-6611")), 

cleanup

@@ -0,0 +1,2 @@
+#!/bin/sh
+rm -f src/Makevars

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.72 for stochtree 0.1.1.
+# Generated by GNU Autoconf 2.72 for stochtree 0.2.0.
 #
 #
 # Copyright (C) 1992-1996, 1998-2017, 2020-2023 Free Software Foundation,
@@ -600,8 +600,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='stochtree'
 PACKAGE_TARNAME='stochtree'
-PACKAGE_VERSION='0.1.1'
-PACKAGE_STRING='stochtree 0.1.1'
+PACKAGE_VERSION='0.2.0'
+PACKAGE_STRING='stochtree 0.2.0'
 PACKAGE_BUGREPORT=''
 PACKAGE_URL=''
 
@@ -1205,7 +1205,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-'configure' configures stochtree 0.1.1 to adapt to many kinds of systems.
+'configure' configures stochtree 0.2.0 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1267,7 +1267,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of stochtree 0.1.1:";;
+     short | recursive ) echo "Configuration of stochtree 0.2.0:";;
    esac
   cat <<\_ACEOF
 
@@ -1335,7 +1335,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-stochtree configure 0.1.1
+stochtree configure 0.2.0
 generated by GNU Autoconf 2.72
 
 Copyright (C) 2023 Free Software Foundation, Inc.
@@ -1372,7 +1372,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by stochtree $as_me 0.1.1, which was
+It was created by stochtree $as_me 0.2.0, which was
 generated by GNU Autoconf 2.72.  Invocation command line was
 
   $ $0$ac_configure_args_raw
@@ -2385,7 +2385,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by stochtree $as_me 0.1.1, which was
+This file was extended by stochtree $as_me 0.2.0, which was
 generated by GNU Autoconf 2.72.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -2440,7 +2440,7 @@ ac_cs_config_escaped=`printf "%s\n" "$ac_cs_config" | sed "s/^ //; s/'/'\\\\\\\\
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config='$ac_cs_config_escaped'
 ac_cs_version="\\
-stochtree config.status 0.1.1
+stochtree config.status 0.2.0
 configured by $0, generated by GNU Autoconf 2.72,
   with options \\"\$ac_cs_config\\"
 
@@ -3000,3 +3000,4 @@ if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
 printf "%s\n" "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
 fi
 
+

configure.ac

@@ -3,7 +3,7 @@
 # https://github.com/microsoft/LightGBM/blob/master/R-package/configure.ac
 
 AC_PREREQ(2.69)
-AC_INIT([stochtree], [0.1.1], [], [stochtree], [])
+AC_INIT([stochtree], [0.2.0], [], [stochtree], [])
 # Note: consider making version number dynamic as in 
 # https://github.com/microsoft/LightGBM/blob/195c26fc7b00eb0fec252dfe841e2e66d6833954/build-cran-package.sh
 

cran-comments.md

@@ -1,8 +1,7 @@
 ## R CMD check results
 
-0 errors | 0 warnings | 3 notes
+0 errors | 0 warnings | 2 notes
 
-* This is a new release.
 * Checking installed package size ... NOTE installed size is 46.3Mb (linux-only)
 * Possibly misspelled words in DESCRIPTION: All of the words are proper nouns or technical terms (BCF, Carvalho, Chipman, McCulloch, XBART)
 

inst/COPYRIGHTS

@@ -1,7 +1,7 @@
 stochtree
 Copyright 2023-2025 stochtree contributors
 
-Several stochtree C++ header and source files include or are inspired by code 
+Several stochtree C++ header / source files and build files include or are inspired by code 
 in several open-source decision tree libraries: xgboost, LightGBM, and treelite. 
 Copyright and license information for each of these three projects are detailed 
 further below and in comments in each of the files.
@@ -13,6 +13,11 @@ File: src/include/stochtree/log.h [LightGBM]
 File: src/include/stochtree/meta.h [LightGBM]
 File: src/include/stochtree/partition_tracker.h [LightGBM, xgboost]
 File: src/include/stochtree/tree.h [xgboost, treelite]
+File: configure.ac [LightGBM]
+File: configure.win [LightGBM]
+File: cleanup [LightGBM]
+File: Makevars.in [LightGBM]
+File: Makevars.win.in [LightGBM]
 
 This project includes software from the xgboost project (Apache, 2.0).
 * Copyright 2015-2024, XGBoost Contributors