Merge pull request #435 from ArnoStrouwen/qa

Aqua + typos CI

Author: ChrisRackauckas

.github/workflows/SpellCheck.yml

@@ -0,0 +1,13 @@
+name: Spell Check
+
+on: [pull_request]
+
+jobs:
+  typos-check:
+    name: Spell Check with Typos
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout Actions Repository
+        uses: actions/checkout@v3
+      - name: Check spelling
+        uses: crate-ci/typos@v1.16.23 

.typos.toml

@@ -0,0 +1,4 @@
+[default.extend-words]
+fom = "fom"
+Pris = "Pris"
+PARM = "PARM"

Project.toml

@@ -8,7 +8,6 @@ ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
 ConcreteStructs = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 EnumX = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
-EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
 FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641"
 GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527"
 InteractiveUtils = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
@@ -34,6 +33,7 @@ BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
 BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
 CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
 Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
+EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869"
 FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e"
 HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771"
 IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153"
@@ -47,7 +47,7 @@ RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
 LinearSolveBandedMatricesExt = "BandedMatrices"
 LinearSolveBlockDiagonalsExt = "BlockDiagonals"
 LinearSolveCUDAExt = "CUDA"
-LinearSolveEnzymeExt = "Enzyme"
+LinearSolveEnzymeExt = ["Enzyme", "EnzymeCore"]
 LinearSolveHYPREExt = "HYPRE"
 LinearSolveIterativeSolversExt = "IterativeSolvers"
 LinearSolveKernelAbstractionsExt = "KernelAbstractions"
@@ -58,39 +58,55 @@ LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools"
 LinearSolveFastAlmostBandedMatricesExt = ["FastAlmostBandedMatrices"]
 
 [compat]
+Aqua = "0.8"
 ArrayInterface = "7.4.11"
 BandedMatrices = "1"
 BlockDiagonals = "0.1"
 ConcreteStructs = "0.2"
+CUDA = "5"
 DocStringExtensions = "0.9"
 EnumX = "1"
+Enzyme = "0.11"
 EnzymeCore = "0.6"
+FastAlmostBandedMatrices = "0.1"
 FastLapackInterface = "2"
+FiniteDiff = "2"
+ForwardDiff = "0.10"
 GPUArraysCore = "0.1"
 HYPRE = "1.4.0"
 InteractiveUtils = "1.6"
 IterativeSolvers = "0.9.3"
 Libdl = "1.6"
 LinearAlgebra = "1.9"
+JET = "0.8"
 KLU = "0.3.0, 0.4"
 KernelAbstractions = "0.9"
 Krylov = "0.9"
 KrylovKit = "0.6"
+Metal = "0.5"
+MPI = "0.20"
+MultiFloats = "1"
+Pardiso = "0.5"
+Pkg = "1"
 PrecompileTools = "1"
 Preferences = "1"
+Random = "1"
 RecursiveArrayTools = "2"
 RecursiveFactorization = "0.2.8"
 Reexport = "1"
 Requires = "1"
+SafeTestsets = "0.1"
 SciMLBase = "2"
 SciMLOperators = "0.3"
 Setfield = "1"
 SparseArrays = "1.9"
 Sparspak = "0.3.6"
+Test = "1"
 UnPack = "1"
 julia = "1.9"
 
 [extras]
+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
 BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
 Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
@@ -113,4 +129,4 @@ SafeTestsets = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [targets]
-test = ["Test", "IterativeSolvers", "InteractiveUtils", "JET", "KrylovKit", "Pkg", "Random", "SafeTestsets", "MultiFloats", "ForwardDiff", "HYPRE", "MPI", "BlockDiagonals", "Enzyme", "FiniteDiff", "BandedMatrices", "FastAlmostBandedMatrices"]
+test = ["Aqua", "Test", "IterativeSolvers", "InteractiveUtils", "JET", "KrylovKit", "Pkg", "Random", "SafeTestsets", "MultiFloats", "ForwardDiff", "HYPRE", "MPI", "BlockDiagonals", "Enzyme", "FiniteDiff", "BandedMatrices", "FastAlmostBandedMatrices"]

docs/src/solvers/solvers.md

@@ -109,7 +109,7 @@ NormalBunchKaufmanFactorization
 
 ### LinearSolve.jl
 
-LinearSolve.jl contains some linear solvers built in for specailized cases.
+LinearSolve.jl contains some linear solvers built in for specialized cases.
 
 ```@docs
 SimpleLUFactorization

test/basictests.jl

@@ -43,17 +43,17 @@ function test_interface(alg, prob1, prob2)
     sol = solve(prob2, alg; cache_kwargs...)
     @test A2 * sol.u ≈ b2
 
-    # Test cache resue: base mechanism
+    # Test cache reuse: base mechanism
     cache = SciMLBase.init(prob1, alg; cache_kwargs...) # initialize cache
     sol = solve!(cache)
     @test A1 * sol.u ≈ b1
 
-    # Test cache resue: only A changes
+    # Test cache reuse: only A changes
     cache.A = deepcopy(A2)
     sol = solve!(cache; cache_kwargs...)
     @test A2 * sol.u ≈ b1
 
-    # Test cache resue: both A and b change
+    # Test cache reuse: both A and b change
     cache.A = deepcopy(A2)
     cache.b = b2
     sol = solve!(cache; cache_kwargs...)

test/qa.jl

@@ -0,0 +1,12 @@
+using LinearSolve, Aqua
+@testset "Aqua" begin
+    Aqua.find_persistent_tasks_deps(LinearSolve)
+    Aqua.test_ambiguities(LinearSolve, recursive = false, broken = true)
+    Aqua.test_deps_compat(LinearSolve, ignore = [:MKL_jll])
+    Aqua.test_piracies(LinearSolve,
+        treat_as_own = [LinearProblem])
+    Aqua.test_project_extras(LinearSolve)
+    Aqua.test_stale_deps(LinearSolve)
+    Aqua.test_unbound_args(LinearSolve)
+    Aqua.test_undefined_exports(LinearSolve)
+end

test/runtests.jl

@@ -7,6 +7,7 @@ const GROUP = get(ENV, "GROUP", "All")
 const HAS_EXTENSIONS = isdefined(Base, :get_extension)
 
 if GROUP == "All" || GROUP == "Core"
+    @time @safetestset "Quality Assurance" include("qa.jl")
     @time @safetestset "Basic Tests" include("basictests.jl")
     VERSION >= v"1.9" && @time @safetestset "Re-solve" include("resolve.jl")
     @time @safetestset "Zero Initialization Tests" include("zeroinittests.jl")