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feat(agent): harden runtime agent design #326

Job	Run time
nix-test (ubuntu-22.04, x86_64-unknown-linux-gnu, dist/pythinker)	1m 59s
test (3.13)	7m 49s
release-validate	9s
check	46s
nix-test (ubuntu-22.04-arm, aarch64-unknown-linux-gnu, dist/pythinker)	1m 27s
nix-test (macos-14, aarch64-apple-darwin, dist/pythinker)	2m 59s
test (3.12)	8m 18s
build (ubuntu-22.04, x86_64-unknown-linux-gnu, dist/onefile/pythinker)	3m 1s
test (3.14)	8m 29s
build (macos-14, aarch64-apple-darwin, dist/onefile/pythinker)	2m 3s
build (windows-2025-vs2026, x86_64-pc-windows-msvc, dist/onefile/pythinker.exe, true)	4m 0s
build (ubuntu-22.04-arm, aarch64-unknown-linux-gnu, dist/onefile/pythinker)	2m 36s
build (windows-2022, x86_64-pc-windows-msvc, dist/onefile/pythinker.exe)	4m 10s
	47m 46s