Add PUT /config/ae (#371)

Signed-off-by: Victor Chang <vicchang@nvidia.com>

Author: mocsharp

.github/workflows/ci.yml

@@ -57,8 +57,21 @@ jobs:
         uses: gittools/actions/gitversion/execute@v0.10.2
         with:
           useConfigFile: true
+          updateAssemblyInfo: true
+          updateAssemblyInfoFilename: src/AssemblyInfo.cs
           configFilePath: .github/.gitversion.yml
 
+      - name: Print AssemblyInfo
+        run: cat src/AssemblyInfo.cs
+
+      - name: Upload AssemblyInfo
+        uses: actions/upload-artifact@v3.1.2
+        if: always()
+        with:
+          name: assembly-info
+          path: src/AssemblyInfo.cs
+          retention-days: 30
+
   CodeQL-Analyze:
     runs-on: ubuntu-latest
     permissions:
@@ -330,6 +343,16 @@ jobs:
           restore-keys: |
             ${{ runner.os }}-nuget
 
+      - name: Download AssemblyInfo.cs
+        id: download
+        uses: actions/download-artifact@v3
+        with:
+          name: assembly-info
+          path: src/
+          
+      - name: Print AssemblyInfo
+        run: cat src/AssemblyInfo.cs
+
       - name: Restore dependencies
         run: dotnet restore
         working-directory: ./src

doc/dependency_decisions.yml

@@ -2401,21 +2401,21 @@
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/mongodb/mongo-csharp-driver/raw/master/License.txt)
     :versions:
-    - 2.19.0
+    - 2.19.1
     :when: 2022-11-16 23:38:53.891380809 Z
 - - :approve
   - MongoDB.Driver
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/mongodb/mongo-csharp-driver/raw/master/License.txt)
     :versions:
-    - 2.19.0
+    - 2.19.1
     :when: 2022-11-16 23:38:54.213853364 Z
 - - :approve
   - MongoDB.Driver.Core
   - :who: mocsharp
     :why: Apache-2.0 (https://github.com/mongodb/mongo-csharp-driver/raw/master/License.txt)
     :versions:
-    - 2.19.0
+    - 2.19.1
     :when: 2022-11-16 23:38:54.553730219 Z
 - - :approve
   - MongoDB.Libmongocrypt

docs/api/rest/config.md

@@ -168,6 +168,65 @@ curl --location --request POST 'http://localhost:5000/config/ae/' \
 
 ---
 
+## PUT /config/ae
+
+Updates an existing MONAI SCP Application Entity.
+
+> [!Note]
+> The MONAI SCP AE Title cannot be changed.
+
+> [!Note]
+> The DICOM tag used for `grouping` can be either a Study Instance UID (0020,000D) or Series Instance UID (0020,000E).
+> The default is set to a Study Instance UID (0020,000D) if not specified.
+
+> [!Note]
+> `timeout` is the number of seconds the AE Title will wait between each instance before assembling a payload and publishing
+> a workflow request. We recommend calculating this value based on the network speed and the maximum size of each
+> DICOM instance.
+
+### Parameters
+
+See the [MonaiApplicationEntity](xref:Monai.Deploy.InformaticsGateway.Api.MonaiApplicationEntity)
+class definition for details.
+
+### Responses
+
+Response Content Type: JSON - [MonaiApplicationEntity](xref:Monai.Deploy.InformaticsGateway.Api.MonaiApplicationEntity).
+
+| Code | Description                                                                                                                                 |
+| ---- | ------------------------------------------------------------------------------------------------------------------------------------------- |
+| 200  | AE Title updated successfully.                                                                                                              |
+| 400  | Validation error. The response will be a [Problem details](https://datatracker.ietf.org/doc/html/rfc7807) object with server error details. |
+| 404  | Named MONAI AE not found.                                                                                                                      |
+| 500  | Server error. The response will be a [Problem details](https://datatracker.ietf.org/doc/html/rfc7807) object with server error details.     |
+
+### Example Request
+
+```bash
+curl --location --request PUT 'http://localhost:5000/config/ae/' \
+    --header 'Content-Type: application/json' \
+    --data-raw '{
+            "name": "breast-tumor",
+            "timeout": 3,
+            "workflows": [
+                "3f6a08a1-0dea-44e9-ab82-1ff1adf43a8e"
+            ]
+        }
+    }'
+```
+
+### Example Response
+
+```json
+{
+  "name": "breast-tumor",
+  "aeTitle": "BREASTV1",
+  "workflows": ["3f6a08a1-0dea-44e9-ab82-1ff1adf43a8e"],
+  "timeout": 3
+}
+```
+
+---
 ## DELETE /config/ae/{name}
 
 Deletes the specified MONAI SCP Application Entity.

docs/changelog.md

@@ -1,5 +1,5 @@
 <!--
-  ~ Copyright 2021-2022 MONAI Consortium
+  ~ Copyright 2021-2023 MONAI Consortium
   ~
   ~ Licensed under the Apache License, Version 2.0 (the "License");
   ~ you may not use this file except in compliance with the License.
@@ -17,6 +17,43 @@
 
 # Changelog
 
+## 0.3.15
+
+[GitHub Milestone 0.3.15](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/20)
+
+- New APIs for managing SCP AE Titles
+  - `PUT /config/ae`: [Update SCP AE TItle](./api/rest/config.md#put-configae)
+
+## 0.3.14
+
+[GitHub Milestone 0.3.14](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/19)
+
+- Fixes RabbitMQ startup issues.
+
+## 0.3.13
+
+[GitHub Milestone 0.3.13](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/18)
+
+- Fixes an issue where failure uploads caused payload to stuck in the queue and stops processing any incoming data.
+
+## 0.3.12
+
+[GitHub Milestone 0.3.12](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/17)
+
+- Fixes exception handling for unavailable previously created dead-letter queues
+
+## 0.3.11
+
+[GitHub Milestone 0.3.11](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/16)
+
+- Adds exception handling for unavailable previously created dead-letter queues
+
+## 0.3.10
+
+[GitHub Milestone 0.3.10](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/15)
+
+- Fixes payload assembler not respecting user configured timeout window
+
 ## 0.3.8
 
 [GitHub Milestone 0.3.8](https://github.com/Project-MONAI/monai-deploy-informatics-gateway/milestone/14)

docs/compliance/third-party-licenses.md

@@ -8672,14 +8672,14 @@ By downloading this software, you agree to the license terms & all licenses list
 
 
 <details>
-<summary>MongoDB.Bson 2.19.0</summary>
+<summary>MongoDB.Bson 2.19.1</summary>
 
 ## MongoDB.Bson
 
-- Version: 2.19.0
+- Version: 2.19.1
 - Authors: MongoDB Inc.
 - Project URL: https://www.mongodb.com/docs/drivers/csharp/
-- Source: [NuGet](https://www.nuget.org/packages/MongoDB.Bson/2.19.0)
+- Source: [NuGet](https://www.nuget.org/packages/MongoDB.Bson/2.19.1)
 - License: [Apache-2.0](https://github.com/mongodb/mongo-csharp-driver/raw/master/License.txt)
 
 
@@ -8704,14 +8704,14 @@ By downloading this software, you agree to the license terms & all licenses list
 
 
 <details>
-<summary>MongoDB.Driver 2.19.0</summary>
+<summary>MongoDB.Driver 2.19.1</summary>
 
 ## MongoDB.Driver
 
-- Version: 2.19.0
+- Version: 2.19.1
 - Authors: MongoDB Inc.
 - Project URL: https://www.mongodb.com/docs/drivers/csharp/
-- Source: [NuGet](https://www.nuget.org/packages/MongoDB.Driver/2.19.0)
+- Source: [NuGet](https://www.nuget.org/packages/MongoDB.Driver/2.19.1)
 - License: [Apache-2.0](https://github.com/mongodb/mongo-csharp-driver/raw/master/License.txt)
 
 
@@ -8736,14 +8736,14 @@ By downloading this software, you agree to the license terms & all licenses list
 
 
 <details>
-<summary>MongoDB.Driver.Core 2.19.0</summary>
+<summary>MongoDB.Driver.Core 2.19.1</summary>
 
 ## MongoDB.Driver.Core
 
-- Version: 2.19.0
+- Version: 2.19.1
 - Authors: MongoDB Inc.
 - Project URL: https://www.mongodb.com/docs/drivers/csharp/
-- Source: [NuGet](https://www.nuget.org/packages/MongoDB.Driver.Core/2.19.0)
+- Source: [NuGet](https://www.nuget.org/packages/MongoDB.Driver.Core/2.19.1)
 - License: [Apache-2.0](https://github.com/mongodb/mongo-csharp-driver/raw/master/License.txt)
 
 

src/Api/Monai.Deploy.InformaticsGateway.Api.csproj

@@ -24,12 +24,10 @@
     <CodeAnalysisRuleSet>..\.sonarlint\project-monai_monai-deploy-informatics-gatewaycsharp.ruleset</CodeAnalysisRuleSet>
     <RestorePackagesWithLockFile>true</RestorePackagesWithLockFile>
     <Nullable>enable</Nullable>
+    <GenerateAssemblyInfo>false</GenerateAssemblyInfo>
   </PropertyGroup>
 
   <ItemGroup>
-    <PackageReference Include="GitVersion.MsBuild" Version="5.12.0">
-      <PrivateAssets>All</PrivateAssets>
-    </PackageReference>
     <PackageReference Include="Macross.Json.Extensions" Version="3.0.0" />
     <PackageReference Include="Microsoft.EntityFrameworkCore.Abstractions" Version="6.0.15" />
     <PackageReference Include="Monai.Deploy.Messaging" Version="0.1.22" />
@@ -46,6 +44,10 @@
     <AdditionalFiles Include="..\.sonarlint\project-monai_monai-deploy-informatics-gateway\CSharp\SonarLint.xml" Link="SonarLint.xml" />
   </ItemGroup>
 
+  <ItemGroup>
+    <Compile Include="..\AssemblyInfo.cs" Link="AssemblyInfo.cs" />
+  </ItemGroup>
+
   <ItemGroup>
     <ProjectReference Include="..\Common\Monai.Deploy.InformaticsGateway.Common.csproj" />
   </ItemGroup>

src/Api/MonaiApplicationEntity.cs

@@ -15,6 +15,7 @@
  * limitations under the License.
  */
 
+using System;
 using System.Collections.Generic;
 using System.ComponentModel.DataAnnotations;
 using System.ComponentModel.DataAnnotations.Schema;
@@ -95,6 +96,16 @@ public class MonaiApplicationEntity : MongoDBEntityBase
         /// </summary>
         public string? CreatedBy { get; set; }
 
+        /// <summary>
+        /// Gets or set the most recent user who updated the DICOM entity.
+        /// </summary>
+        public string? UpdatedBy { get; set; }
+
+        /// <summary>
+        /// Gets or set the most recent date time the DICOM entity was updated.
+        /// </summary>
+        public DateTime? DateTimeUpdated { get; set; }
+
         public MonaiApplicationEntity()
         {
             SetDefaultValues();
@@ -124,9 +135,21 @@ public override string ToString()
             return $"Name: {Name}/AET: {AeTitle}";
         }
 
-        public void SetAuthor(ClaimsPrincipal user)
+        public void SetAuthor(ClaimsPrincipal user, EditMode editMode)
         {
-            CreatedBy = user.Identity?.Name;
+            if (editMode == EditMode.Update)
+            {
+                DateTimeUpdated = DateTime.UtcNow;
+            }
+
+            if (editMode == EditMode.Create)
+            {
+                CreatedBy = user.Identity?.Name;
+            }
+            else if (editMode == EditMode.Update)
+            {
+                UpdatedBy = user.Identity?.Name;
+            }
         }
     }
 }

src/Api/Storage/Payload.cs

@@ -75,6 +75,9 @@ public TimeSpan Elapsed
 
         public string? CalledAeTitle { get => Files.OfType<DicomFileStorageMetadata>().Select(p => p.CalledAeTitle).FirstOrDefault(); }
 
+        public int FilesUploaded { get => Files.Count(p => p.IsUploaded); }
+        public int FilesFailedToUpload { get => Files.Count(p => p.IsUploadFailed); }
+
         public Payload(string key, string correlationId, uint timeout)
         {
             Guard.Against.NullOrWhiteSpace(key);

src/Api/packages.lock.json

@@ -2,12 +2,6 @@
   "version": 1,
   "dependencies": {
     "net6.0": {
-      "GitVersion.MsBuild": {
-        "type": "Direct",
-        "requested": "[5.12.0, )",
-        "resolved": "5.12.0",
-        "contentHash": "dJuigXycpJNOiLT9or7mkHSkGFHgGW3/p6cNNYEKZBa7Hhp1FdX/cvqYWWYhRLpfoZOedeA7aRbYiOB3vW/dvA=="
-      },
       "Macross.Json.Extensions": {
         "type": "Direct",
         "requested": "[3.0.0, )",

src/AssemblyInfo.cs

@@ -0,0 +1,22 @@
+/*
+ * Copyright 2023 MONAI Consortium
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+using System.Reflection;
+
+[assembly: AssemblyVersion("0.0.0.0")]
+[assembly: AssemblyFileVersion("0.0.0.0")]
+[assembly: AssemblyInformationalVersion("0.0.0")]
+