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Signed-off-by: Wenqi Li <wenqil@nvidia.com>
part of #5090
### Description
update the changelog
please see also the backward compatibility guide:
https://github.com/Project-MONAI/MONAI/blob/dev/CONTRIBUTING.md#backwards-compatibility
### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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@@ -5,6 +5,53 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
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## [Unreleased]
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## [1.0.0] - 2022-09-16
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### Added
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*`monai.auto3dseg` base APIs and `monai.apps.auto3dseg` components for automated machine learning (AutoML) workflow
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*`monai.fl` module with base APIs and `MonaiAlgo` for federated learning client workflow
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* An initial backwards compatibility [guide](https://github.com/Project-MONAI/MONAI/blob/dev/CONTRIBUTING.md#backwards-compatibility)
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* Initial release of accelerated MRI reconstruction components, including `CoilSensitivityModel`
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* Support of `MetaTensor` and new metadata attributes for various digital pathology components
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* Various `monai.bundle` enhancements for MONAI model-zoo usability, including config debug mode and `get_all_bundles_list`
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* new `monai.transforms` components including `SignalContinuousWavelet` for 1D signal, `ComputeHoVerMaps` for digital pathology, and `SobelGradients` for spatial gradients
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*`VarianceMetric` and `LabelQualityScore` metrics for active learning
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* Dataset API for real-time stream and videos
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* Several networks and building blocks including `FlexibleUNet` and `HoVerNet`
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*`MeanIoUHandler` and `LogfileHandler` workflow event handlers
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*`WSIReader` with the TiffFile backend
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* Multi-threading in `WSIReader` with cuCIM backend
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*`get_stats` API in `monai.engines.Workflow`
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*`prune_meta_pattern` in `monai.transforms.LoadImage`
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*`max_interactions` for deepedit interaction workflow
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* Various profiling utilities in `monai.utils.profiling`
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### Changed
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* Base Docker image upgraded to `nvcr.io/nvidia/pytorch:22.08-py3` from `nvcr.io/nvidia/pytorch:22.06-py3`
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* Optionally depend on PyTorch-Ignite v0.4.10 instead of v0.4.9
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* The cache-based dataset now matches the transform information when read/write the cache
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*`monai.losses.ContrastiveLoss` now infers `batch_size` during `forward()`
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* Rearrange the spatial axes in `RandSmoothDeform` transforms following PyTorch's convention
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* Unified several environment flags into `monai.utils.misc.MONAIEnvVars`
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* Simplified `__str__` implementation of `MetaTensor` instead of relying on the `__repr__` implementation
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### Fixed
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* Improved error messages when both `monai` and `monai-weekly` are pip-installed
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* Inconsistent pseudo number sequences for different `num_workers` in `DataLoader`
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* Issue of repeated sequences for `monai.data.ShuffleBuffer`
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* Issue of not preserving the physical extent in `monai.transforms.Spacing`
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* Issue of using `inception_v3` as the backbone of `monai.networks.nets.TorchVisionFCModel`
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* Index device issue for `monai.transforms.Crop`
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* Efficiency issue when converting the array dtype and contiguous memory
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### Deprecated
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*`Addchannel` and `AsChannelFirst` transforms in favor of `EnsureChannelFirst`
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*`monai.apps.pathology.data` components in favor of the corresponding components from `monai.data`
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*`monai.apps.pathology.handlers` in favor of the corresponding components from `monai.handlers`
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### Removed
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*`Status` section in the pull request template in favor of the pull request draft mode
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*`monai.engines.BaseWorkflow`
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*`ndim` and `dimensions` arguments in favor of `spatial_dims`
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*`n_classes`, `num_classes` arguments in `AsDiscrete` in favor of `to_onehot`
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*`logit_thresh`, `threshold_values` arguments in `AsDiscrete` in favor of `threshold`
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*`torch.testing.assert_allclose` in favor of `tests.utils.assert_allclose`
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## [0.9.1] - 2022-07-22
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### Added
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* Support of `monai.data.MetaTensor` as core data structure across the modules
@@ -561,7 +608,8 @@ the postprocessing steps should be used before calling the metrics methods
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