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Support PEtab SciML problems and enable linting #3675

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Run time

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Job	Run time
build (ubuntu-latest, 3.12)	5m 46s
build (windows-latest, 3.x)	5m 7s
build (macos-latest, 3.12)	3m 21s
build (macos-latest, 3.x)	2m 23s
build (windows-latest, 3.12)	7m 8s
build (ubuntu-latest, 3.x)	4m 4s
	27m 49s