From 4cfb540c41e21c634a7e7d295d64544481de1a0a Mon Sep 17 00:00:00 2001 From: Josh Chorlton Date: Thu, 2 Jul 2026 20:33:00 +0000 Subject: [PATCH] add test data for freyja data with pathogen specified --- .../freyja/pathogen_specified/rsv_sample.demix_out.tsv | 7 +++++++ 1 file changed, 7 insertions(+) create mode 100644 data/modules/freyja/pathogen_specified/rsv_sample.demix_out.tsv diff --git a/data/modules/freyja/pathogen_specified/rsv_sample.demix_out.tsv b/data/modules/freyja/pathogen_specified/rsv_sample.demix_out.tsv new file mode 100644 index 00000000..a90131b9 --- /dev/null +++ b/data/modules/freyja/pathogen_specified/rsv_sample.demix_out.tsv @@ -0,0 +1,7 @@ + variant_files/sample3.demix_out.tsv +summarized [('BQ.1* [Omicron (BQ.1.X)]', 0.9836862475443224), ('Omicron', 0.011029767835432084)] +lineages DN.1.1 BQ.1.1.44 BQ.1.1.6 BQ.1.1.53 BQ.1.1.52 BQ.1.22 BQ.1.1.19 BQ.1.1.58 BQ.1.1.37 BQ.1.1.1 BQ.1.1.4 BQ.1.1.36 BQ.1.18 BQ.1.1.45 BQ.1.1.3 BQ.1.1.10 BQ.1.1.18 BQ.1.1.64 BQ.1.1.46 BQ.1.1.50 DT.2 BQ.1.1.66 BQ.1.1.47 BQ.1.1.68 BQ.1.1.67 BQ.1.9 BQ.1.24 BQ.1.1 XBS BQ.1.1.32 BQ.1.1.69 BQ.1.1.16 BQ.1.1.17 BQ.1.1.14 BQ.1.1.40 BQ.1.1.51 BQ.1.1.24 BQ.1.1.9 BQ.1.1.13 BQ.1.1.15 BQ.1.1.22 BQ.1.1.56 BQ.1.1.31 BQ.1.1.21 DT.3 BQ.1.1.62 EH.1 EE.5 DR.1 BQ.1.1.2 BQ.1.1.59 BQ.1.1.48 BQ.1.1.49 BQ.1.1.23 ED.3 ED.2 ED.1 BQ.1.1.7 BQ.1.1.61 BQ.1.1.43 EN.1 BQ.1.1.41 BQ.1.1.28 BQ.1.1.54 BQ.1.1.27 DU.1 DN.1 EE.2 EE.1 BQ.1.1.8 EE.4 BQ.1.1.63 EF.1 EF.2 BQ.1.1.39 BQ.1.1.60 BQ.1.1.20 BQ.1.1.70 BQ.1.1.42 BQ.1.1.57 BQ.1.1.38 BQ.1.1.55 BQ.1.1.65 BQ.1.1.29 EA.1 BQ.1.1.5 BQ.1.1.35 CZ.2 EE.3 BQ.1.19 CW.1 +abundances 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.01102977 0.00203691 +resid 0.06712715121973137 +coverage 1.8392803397652409 +pathogen RSV-A