diff --git a/README.md b/README.md new file mode 100644 index 0000000..ca29aa2 --- /dev/null +++ b/README.md @@ -0,0 +1,28 @@ +# README for Brian Code Associated with the Paper + +Peter beim Graben and Serafim Rodrigues + +A Biophysical observation model for field potentials of networks of +leaky-integrate-and-fire neurons. +*Front. Comput. Neurosci*, 04 January 2013 +doi: 10.3389/fncom.2012.00100 + +******************************* + +This python code, Gunft6.py, requires and runs under the Brian simulator. + +## Note for developers: + +- **Note 1:** As it stands, the code is not efficient (fast) as it does not use the facilities vector processing and uses a lot of for-loops which is not efficient. So it can be improved. +- **Note 2:** Periodic thalamic input is not yet implemented. + +***************************** + +1. This is a network of 5000 neurons, 80% of which excitatory, and 20% inhibitory. +2. The network is randomly connected (between pairs) with connection probability = 0.2. +3. Both Excitatory and Inhibitory neurons are described via LIF model. +4. The currents are double exponential, but the excitatory currents can receive external noise. + +--- + +2025-07-09: Converted README to Markdown. \ No newline at end of file diff --git a/readme.txt b/readme.txt deleted file mode 100644 index 906fbdf..0000000 --- a/readme.txt +++ /dev/null @@ -1,29 +0,0 @@ -This is the readme for the Brian code associated with the paper: - -Peter beim Graben and Serafim Rodrigues - -A Biophysical observation model for field potentials of networks of -leaky-integrate-and-fire neurons. -Front. Comput. Neurosci, 04 January 2013 -doi: 10.3389/fncom.2012.00100 - -******************************* -This python code, Gunft6.py, requires and runs under the Brian -simulator. - -Note for developers: - -Note 1 : As it stands, the code is not effiecient (fast) as it does -not use the facilties vector processing and uses a lot of for-loops -which is not efficient. So it can be improved. -Note 2: Periodic thalamic input is not yet implemented. - -***************************** - -1) This is a network of 5000 neurons, 80% of which excitatory, and 20% - inhibitory. -2) The network is randomy connected (between pairs) with connection - probability = 0.2. -3) Both Excitatory and Inhibitory neurons are described via LIF model. -4) The currents are double exponetial, but the excitatory currents can - recieve external noise.