Verbose logging while tests are failing

Author: tieneupin

src/murfey/workflows/fib/register_lamella_evaluation_image.py

@@ -179,6 +179,9 @@ def _register_dcg(
     murfey_db.add(imaging_site)
     murfey_db.commit()
 
+    logger.info(
+        f"Return ImagingSite with values: {json.dumps(imaging_site.model_dump(), indent=2, default=str)}"
+    )
     return imaging_site
 
 
@@ -216,6 +219,10 @@ def _register_grid_square(
         return imaging_site
     atlas = atlas_search[-1]
 
+    logger.info(
+        f"Found atlas ImagingSite: {json.dumps(atlas.model_dump(), indent=2, default=str)}"
+    )
+
     # Check if the atlas has the required values for the GridSquare registration
     if not (
         atlas.pos_x is not None
@@ -316,6 +323,10 @@ def _register_grid_square(
         grid_square_entry.pixel_size = grid_square_params.pixel_size
         grid_square_entry.image = grid_square_params.image
 
+        logger.info(
+            f"Updated Murfey GridSquare entry: {json.dumps(grid_square_entry.model_dump(), indent=2, default=str)}"
+        )
+
         # Update existing entry on ISPyB
         murfey.server._transport_object.do_update_grid_square(
             grid_square_id=grid_square_entry.id,
@@ -353,13 +364,19 @@ def _register_grid_square(
             pixel_size=grid_square_params.pixel_size,
             image=grid_square_params.image,
         )
+        logger.info(
+            f"Creating new Murfey GridSquare entry: {json.dumps(grid_square_entry.model_dump(), indent=2, default=str)}"
+        )
     murfey_db.add(grid_square_entry)
 
     # Add grid square ID to existing CLEM image series entry
     imaging_site.grid_square_id = grid_square_entry.id
     murfey_db.add(imaging_site)
     murfey_db.commit()
 
+    logger.info(
+        f"Updated ImagingSite after GridSquare registration: {json.dumps(imaging_site.model_dump(), indent=2, default=str)}"
+    )
     return imaging_site