From f2c09e605425c201ba9936668f91cf16ae84187f Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Fri, 13 Mar 2026 14:26:06 +0000 Subject: [PATCH 01/17] Apply python copier template uvx copier copy https://github.com/DiamondLightSource/python-copier-template.git . --- .copier-answers.yml | 19 +++ .devcontainer/devcontainer.json | 72 ++++++++++ .github/CONTRIBUTING.md | 27 ++++ .github/ISSUE_TEMPLATE/bug_report.md | 21 +++ .github/ISSUE_TEMPLATE/issue.md | 13 ++ .../pull_request_template.md | 8 ++ .github/pages/index.html | 11 ++ .github/pages/make_switcher.py | 96 +++++++++++++ .github/workflows/_container.yml | 64 +++++++++ .github/workflows/_dist.yml | 37 +++++ .github/workflows/_release.yml | 32 +++++ .github/workflows/_test.yml | 39 +++++ .github/workflows/_tox.yml | 22 +++ .github/workflows/ci.yml | 47 ++++++ .gitignore | 92 ++++++++---- .gitleaks.toml | 19 +++ .pre-commit-config.yaml | 37 +++++ .python-version | 1 + .vscode/extensions.json | 5 + .vscode/launch.json | 19 +++ .vscode/settings.json | 12 ++ .vscode/tasks.json | 16 +++ Dockerfile | 44 ++++++ README.md | 70 ++------- catalog-info.yaml | 10 ++ pyproject.toml | 136 +++++++++++++++++- renovate.json | 39 +++++ src/pyburt/__init__.py | 11 ++ src/pyburt/__main__.py | 24 ++++ tests/test_cli.py | 9 ++ uv.lock | 3 + 31 files changed, 973 insertions(+), 82 deletions(-) create mode 100644 .copier-answers.yml create mode 100644 .devcontainer/devcontainer.json create mode 100644 .github/CONTRIBUTING.md create mode 100644 .github/ISSUE_TEMPLATE/bug_report.md create mode 100644 .github/ISSUE_TEMPLATE/issue.md create mode 100644 .github/PULL_REQUEST_TEMPLATE/pull_request_template.md create mode 100644 .github/pages/index.html create mode 100755 .github/pages/make_switcher.py create mode 100644 .github/workflows/_container.yml create mode 100644 .github/workflows/_dist.yml create mode 100644 .github/workflows/_release.yml create mode 100644 .github/workflows/_test.yml create mode 100644 .github/workflows/_tox.yml create mode 100644 .github/workflows/ci.yml create mode 100644 .gitleaks.toml create mode 100644 .pre-commit-config.yaml create mode 100644 .python-version create mode 100644 .vscode/extensions.json create mode 100644 .vscode/launch.json create mode 100644 .vscode/settings.json create mode 100644 .vscode/tasks.json create mode 100644 Dockerfile create mode 100644 catalog-info.yaml create mode 100644 renovate.json create mode 100644 src/pyburt/__init__.py create mode 100644 src/pyburt/__main__.py create mode 100644 tests/test_cli.py create mode 100644 uv.lock diff --git a/.copier-answers.yml b/.copier-answers.yml new file mode 100644 index 0000000..d581d87 --- /dev/null +++ b/.copier-answers.yml @@ -0,0 +1,19 @@ +# Changes here will be overwritten by Copier +_commit: 5.0.2 +_src_path: https://github.com/DiamondLightSource/python-copier-template.git +author_email: diamhighlvlapps@diamond.ac.uk +author_name: High Level Apps +component_lifecycle: production +component_owner: group:default/high-level-apps +component_type: application +description: Python version of the BackUp and ResTore tool +distribution_name: pyburt +docker: true +docker_debug: false +docs_type: README +git_platform: github.com +github_org: DiamondLightSource +package_name: pyburt +pypi: false +repo_name: pyburt +type_checker: mypy diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json new file mode 100644 index 0000000..c12cce5 --- /dev/null +++ b/.devcontainer/devcontainer.json @@ -0,0 +1,72 @@ +// For format details, see https://containers.dev/implementors/json_reference/ +{ + "name": "Python 3 Developer Container", + "build": { + "dockerfile": "../Dockerfile", + "target": "developer" + }, + "remoteEnv": { + // Allow X11 apps to run inside the container + "DISPLAY": "${localEnv:DISPLAY}", + // Put things that allow it in the persistent cache + "PRE_COMMIT_HOME": "/cache/pre-commit", + "UV_CACHE_DIR": "/cache/uv", + "UV_PYTHON_CACHE_DIR": "/cache/uv-python", + // Make a venv that is specific for this workspace path as the cache is shared + "UV_PROJECT_ENVIRONMENT": "/cache/venv-for${localWorkspaceFolder}", + // Do the equivalent of "activate" the venv so we don't have to "uv run" everything + "VIRTUAL_ENV": "/cache/venv-for${localWorkspaceFolder}", + "PATH": "/cache/venv-for${localWorkspaceFolder}/bin:${containerEnv:PATH}" + }, + "customizations": { + "vscode": { + // Set *default* container specific settings.json values on container create. + "settings": { + // Use the container's python by default + "python.defaultInterpreterPath": "/cache/venv-for${localWorkspaceFolder}/bin/python", + // Don't activate the venv as it is already in the PATH + "python.terminal.activateEnvInCurrentTerminal": false, + "python.terminal.activateEnvironment": false, + // Workaround to prevent garbled python REPL in the terminal + // https://github.com/microsoft/vscode-python/issues/25505 + "python.terminal.shellIntegration.enabled": false + }, + // Add the IDs of extensions you want installed when the container is created. + "extensions": [ + "ms-python.python", + "github.vscode-github-actions", + "tamasfe.even-better-toml", + "redhat.vscode-yaml", + "ryanluker.vscode-coverage-gutters", + "charliermarsh.ruff", + "ms-azuretools.vscode-docker" + ] + } + }, + // Create the config folder for the bash-config feature and uv cache + "initializeCommand": "mkdir -p ${localEnv:HOME}/.config/terminal-config", + "runArgs": [ + // Allow the container to access the host X11 display and EPICS CA + "--net=host", + // Make sure SELinux does not disable with access to host filesystems like tmp + "--security-opt=label=disable" + ], + "mounts": [ + // Mount in the user terminal config folder so it can be edited + { + "source": "${localEnv:HOME}/.config/terminal-config", + "target": "/user-terminal-config", + "type": "bind" + }, + // Keep a persistent cross container cache for uv, pre-commit, and the venvs + { + "source": "devcontainer-shared-cache", + "target": "/cache", + "type": "volume" + } + ], + // Mount the parent as /workspaces so we can pip install peers as editable + "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", + // After the container is created, recreate the venv then make pre-commit first run faster + "postCreateCommand": "uv venv --clear && uv sync && pre-commit install --install-hooks" +} diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md new file mode 100644 index 0000000..5f40b11 --- /dev/null +++ b/.github/CONTRIBUTING.md @@ -0,0 +1,27 @@ +# Contribute to the project + +Contributions and issues are most welcome! All issues and pull requests are +handled through [GitHub](https://github.com/DiamondLightSource/pyburt/issues). Also, please check for any existing issues before +filing a new one. If you have a great idea but it involves big changes, please +file a ticket before making a pull request! We want to make sure you don't spend +your time coding something that might not fit the scope of the project. + +## Issue or Discussion? + +Github also offers [discussions](https://github.com/DiamondLightSource/pyburt/discussions) as a place to ask questions and share ideas. If +your issue is open ended and it is not obvious when it can be "closed", please +raise it as a discussion instead. + +## Code Coverage + +While 100% code coverage does not make a library bug-free, it significantly +reduces the number of easily caught bugs! Please make sure coverage remains the +same or is improved by a pull request! + +## Developer Information + +It is recommended that developers use a [vscode devcontainer](https://code.visualstudio.com/docs/devcontainers/containers). This repository contains configuration to set up a containerized development environment that suits its own needs. + +This project was created using the [Diamond Light Source Copier Template](https://github.com/DiamondLightSource/python-copier-template) for Python projects. + +For more information on common tasks like setting up a developer environment, running the tests, and setting a pre-commit hook, see the template's [How-to guides](https://diamondlightsource.github.io/python-copier-template/5.0.2/how-to.html). diff --git a/.github/ISSUE_TEMPLATE/bug_report.md b/.github/ISSUE_TEMPLATE/bug_report.md new file mode 100644 index 0000000..92087f5 --- /dev/null +++ b/.github/ISSUE_TEMPLATE/bug_report.md @@ -0,0 +1,21 @@ +--- +name: Bug Report +about: The template to use for reporting bugs and usability issues +title: " " +labels: 'bug' +assignees: '' + +--- + +Describe the bug, including a clear and concise description of the expected behaviour, the actual behavior and the context in which you encountered it (ideally include details of your environment). + +## Steps To Reproduce +Steps to reproduce the behavior: +1. Go to '...' +2. Click on '....' +3. Scroll down to '....' +4. See error + + +## Acceptance Criteria +- Specific criteria that will be used to judge if the issue is fixed diff --git a/.github/ISSUE_TEMPLATE/issue.md b/.github/ISSUE_TEMPLATE/issue.md new file mode 100644 index 0000000..52c84dd --- /dev/null +++ b/.github/ISSUE_TEMPLATE/issue.md @@ -0,0 +1,13 @@ +--- +name: Issue +about: The standard template to use for feature requests, design discussions and tasks +title: " " +labels: '' +assignees: '' + +--- + +A brief description of the issue, including specific stakeholders and the business case where appropriate + +## Acceptance Criteria +- Specific criteria that will be used to judge if the issue is fixed diff --git a/.github/PULL_REQUEST_TEMPLATE/pull_request_template.md b/.github/PULL_REQUEST_TEMPLATE/pull_request_template.md new file mode 100644 index 0000000..8200afe --- /dev/null +++ b/.github/PULL_REQUEST_TEMPLATE/pull_request_template.md @@ -0,0 +1,8 @@ +Fixes #ISSUE + +### Instructions to reviewer on how to test: +1. Do thing x +2. Confirm thing y happens + +### Checks for reviewer +- [ ] Would the PR title make sense to a user on a set of release notes diff --git a/.github/pages/index.html b/.github/pages/index.html new file mode 100644 index 0000000..c495f39 --- /dev/null +++ b/.github/pages/index.html @@ -0,0 +1,11 @@ + + + + + Redirecting to main branch + + + + + + diff --git a/.github/pages/make_switcher.py b/.github/pages/make_switcher.py new file mode 100755 index 0000000..c06813a --- /dev/null +++ b/.github/pages/make_switcher.py @@ -0,0 +1,96 @@ +"""Make switcher.json to allow docs to switch between different versions.""" + +import json +import logging +from argparse import ArgumentParser +from pathlib import Path +from subprocess import CalledProcessError, check_output + + +def report_output(stdout: bytes, label: str) -> list[str]: + """Print and return something received frm stdout.""" + ret = stdout.decode().strip().split("\n") + print(f"{label}: {ret}") + return ret + + +def get_branch_contents(ref: str) -> list[str]: + """Get the list of directories in a branch.""" + stdout = check_output(["git", "ls-tree", "-d", "--name-only", ref]) + return report_output(stdout, "Branch contents") + + +def get_sorted_tags_list() -> list[str]: + """Get a list of sorted tags in descending order from the repository.""" + stdout = check_output(["git", "tag", "-l", "--sort=-v:refname"]) + return report_output(stdout, "Tags list") + + +def get_versions(ref: str, add: str | None) -> list[str]: + """Generate the file containing the list of all GitHub Pages builds.""" + # Get the directories (i.e. builds) from the GitHub Pages branch + try: + builds = set(get_branch_contents(ref)) + except CalledProcessError: + builds = set() + logging.warning(f"Cannot get {ref} contents") + + # Add and remove from the list of builds + if add: + builds.add(add) + + # Get a sorted list of tags + tags = get_sorted_tags_list() + + # Make the sorted versions list from main branches and tags + versions: list[str] = [] + for version in ["master", "main"] + tags: + if version in builds: + versions.append(version) + builds.remove(version) + + # Add in anything that is left to the bottom + versions += sorted(builds) + print(f"Sorted versions: {versions}") + return versions + + +def write_json(path: Path, repository: str, versions: list[str]): + """Write the JSON switcher to path.""" + org, repo_name = repository.split("/") + struct = [ + {"version": version, "url": f"https://{org}.github.io/{repo_name}/{version}/"} + for version in versions + ] + text = json.dumps(struct, indent=2) + print(f"JSON switcher:\n{text}") + path.write_text(text, encoding="utf-8") + + +def main(args=None): + """Parse args and write switcher.""" + parser = ArgumentParser( + description="Make a versions.json file from gh-pages directories" + ) + parser.add_argument( + "--add", + help="Add this directory to the list of existing directories", + ) + parser.add_argument( + "repository", + help="The GitHub org and repository name: ORG/REPO", + ) + parser.add_argument( + "output", + type=Path, + help="Path of write switcher.json to", + ) + args = parser.parse_args(args) + + # Write the versions file + versions = get_versions("origin/gh-pages", args.add) + write_json(args.output, args.repository, versions) + + +if __name__ == "__main__": + main() diff --git a/.github/workflows/_container.yml b/.github/workflows/_container.yml new file mode 100644 index 0000000..1d02e99 --- /dev/null +++ b/.github/workflows/_container.yml @@ -0,0 +1,64 @@ +on: + workflow_call: + inputs: + publish: + type: boolean + description: If true, pushes image to container registry + +jobs: + build: + runs-on: ubuntu-latest + + steps: + - name: Checkout + uses: actions/checkout@v5 + with: + # Need this to get version number from last tag + fetch-depth: 0 + + - name: Set up Docker Buildx + id: buildx + uses: docker/setup-buildx-action@v3 + + - name: Log in to GitHub Docker Registry + if: github.event_name != 'pull_request' + uses: docker/login-action@v3 + with: + registry: ghcr.io + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + + - name: Build and export to Docker local cache + uses: docker/build-push-action@v6 + env: + DOCKER_BUILD_RECORD_UPLOAD: false + with: + context: . + # Need load and tags so we can test it below + load: true + tags: tag_for_testing + + - name: Test cli works in cached runtime image + run: docker run --rm tag_for_testing --version + + - name: Create tags for publishing image + id: meta + uses: docker/metadata-action@v5 + with: + images: ghcr.io/${{ github.repository }} + tags: | + type=ref,event=tag + type=raw,value=latest + + - name: Push cached image to container registry + if: inputs.publish && github.ref_type == 'tag' + uses: docker/build-push-action@v6 + env: + DOCKER_BUILD_RECORD_UPLOAD: false + # This does not build the image again, it will find the image in the + # Docker cache and publish it + with: + context: . + push: true + tags: ${{ steps.meta.outputs.tags }} + labels: ${{ steps.meta.outputs.labels }} diff --git a/.github/workflows/_dist.yml b/.github/workflows/_dist.yml new file mode 100644 index 0000000..9fdb47f --- /dev/null +++ b/.github/workflows/_dist.yml @@ -0,0 +1,37 @@ +on: + workflow_call: + +jobs: + build: + runs-on: "ubuntu-latest" + + steps: + - name: Checkout + uses: actions/checkout@v5 + with: + # Need this to get version number from last tag + fetch-depth: 0 + + - name: Install uv + uses: astral-sh/setup-uv@v7 + + - name: Build sdist and wheel + run: > + export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) && + uvx --from build pyproject-build + + - name: Upload sdist and wheel as artifacts + uses: actions/upload-artifact@v4 + with: + name: dist + path: dist + + - name: Check for packaging errors + run: uvx twine check --strict dist/* + + - name: Install produced wheel + run: python -m pip install dist/*.whl + + - name: Test module --version works using the installed wheel + # If more than one module in src/ replace with module name to test + run: python -m $(ls --hide='*.egg-info' src | head -1) --version diff --git a/.github/workflows/_release.yml b/.github/workflows/_release.yml new file mode 100644 index 0000000..15171d4 --- /dev/null +++ b/.github/workflows/_release.yml @@ -0,0 +1,32 @@ +on: + workflow_call: + +jobs: + artifacts: + runs-on: ubuntu-latest + + steps: + - name: Download artifacts + uses: actions/download-artifact@v5 + with: + merge-multiple: true + + - name: Zip up docs + run: | + set -vxeuo pipefail + if [ -d html ]; then + mv html $GITHUB_REF_NAME + zip -r docs.zip $GITHUB_REF_NAME + rm -rf $GITHUB_REF_NAME + fi + + - name: Create GitHub Release + # We pin to the SHA, not the tag, for security reasons. + # https://docs.github.com/en/actions/learn-github-actions/security-hardening-for-github-actions#using-third-party-actions + uses: softprops/action-gh-release@6da8fa9354ddfdc4aeace5fc48d7f679b5214090 # v2.4.1 + with: + prerelease: ${{ contains(github.ref_name, 'a') || contains(github.ref_name, 'b') || contains(github.ref_name, 'rc') }} + files: "*" + generate_release_notes: true + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml new file mode 100644 index 0000000..46cd49d --- /dev/null +++ b/.github/workflows/_test.yml @@ -0,0 +1,39 @@ +on: + workflow_call: + inputs: + python-version: + type: string + description: The version of python to install, default is from .python-version file + default: "" + runs-on: + type: string + description: The runner to run this job on + required: true + +env: + # https://github.com/pytest-dev/pytest/issues/2042 + PY_IGNORE_IMPORTMISMATCH: "1" + UV_PYTHON: ${{ inputs.python-version }} + +jobs: + run: + runs-on: ${{ inputs.runs-on }} + + steps: + - name: Checkout + uses: actions/checkout@v5 + with: + # Need this to get version number from last tag + fetch-depth: 0 + + - name: Install uv + uses: astral-sh/setup-uv@v7 + + - name: Run tests + run: uv run --locked tox -e tests + + - name: Upload coverage to Codecov + uses: codecov/codecov-action@v5 + with: + name: ${{ inputs.python-version }}/${{ inputs.runs-on }} + files: cov.xml diff --git a/.github/workflows/_tox.yml b/.github/workflows/_tox.yml new file mode 100644 index 0000000..56eddd4 --- /dev/null +++ b/.github/workflows/_tox.yml @@ -0,0 +1,22 @@ +on: + workflow_call: + inputs: + tox: + type: string + description: What to run under tox + required: true + + +jobs: + run: + runs-on: "ubuntu-latest" + + steps: + - name: Checkout + uses: actions/checkout@v5 + + - name: Install uv + uses: astral-sh/setup-uv@v7 + + - name: Run tox + run: uv run --locked tox -e ${{ inputs.tox }} diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 0000000..3a57bd8 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,47 @@ +name: CI + +on: + push: + branches: + - main + tags: + - '*' + pull_request: + +jobs: + + lint: + uses: ./.github/workflows/_tox.yml + with: + tox: pre-commit,type-checking + + test: + strategy: + matrix: + runs-on: ["ubuntu-latest"] # can add windows-latest, macos-latest + python-version: ["3.11", "3.12", "3.13"] + fail-fast: false + uses: ./.github/workflows/_test.yml + with: + runs-on: ${{ matrix.runs-on }} + python-version: ${{ matrix.python-version }} + + container: + needs: test + if: always() + uses: ./.github/workflows/_container.yml + with: + publish: ${{ needs.test.result == 'success' }} + permissions: + contents: read + packages: write + + dist: + uses: ./.github/workflows/_dist.yml + + release: + needs: [dist, test] + if: github.ref_type == 'tag' + uses: ./.github/workflows/_release.yml + permissions: + contents: write diff --git a/.gitignore b/.gitignore index 23b91d4..0f33bf2 100644 --- a/.gitignore +++ b/.gitignore @@ -1,27 +1,71 @@ -# IDE files -/.idea/ -/.vscode/ - -# Build files -*/_build/ -/pyburt.egg-info/ -/build/ -/dist/ - -# Pipenv cache -/.cache/ - -# Python backup files -*.pyc - -# Testing files -/.pytest_cache/ -/.coverage -/htmlcov/ +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] + +# C extensions +*.so + +# Distribution / packaging +.Python +env/ +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +*.egg-info/ +.installed.cfg +*.egg +**/_version.py + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml cov.xml +.pytest_cache/ +.mypy_cache/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log + +# Sphinx documentation +docs/_build/ +docs/_api + +# PyBuilder +target/ + +# likely venv names +.venv* +venv* -# Virtualenvs -/venv*/ +# further build artifacts +lockfiles/ -# mypy cache -/.mypy_cache/ +# ruff cache +.ruff_cache/ diff --git a/.gitleaks.toml b/.gitleaks.toml new file mode 100644 index 0000000..9ecf124 --- /dev/null +++ b/.gitleaks.toml @@ -0,0 +1,19 @@ +# This allow-list is limited to YAML/YML files to cut down SealedSecrets false positives. +# All gitleaks default rules still apply everywhere (useDefault = true). +# To broaden this allow-list to all files, comment out the 'paths' line below. + +[extend] +useDefault = true + +[[rules]] +id = "generic-api-key" + +# Pattern-only allowlist for long Ag… tokens in YAML +[[rules.allowlists]] +condition = "AND" +regexes = [ + # Boundary-safe Ag… token without lookarounds (RE2-safe) + '''(?:^|[^A-Za-z0-9+/=])(Ag[A-Za-z0-9+/]{500,}={0,2})(?:[^A-Za-z0-9+/=]|$)''' +] +# Limit to YAML only for now. Comment this out if you want it to apply everywhere. +paths = ['''(?i).*\.ya?ml$'''] diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..a43ed57 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,37 @@ +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v5.0.0 + hooks: + - id: check-added-large-files + exclude: ^uv.lock + - id: check-yaml + - id: check-merge-conflict + - id: end-of-file-fixer + + - repo: local + hooks: + - id: ruff + name: lint with ruff + language: system + entry: ruff check --force-exclude --fix + types: [python] + require_serial: true + + - id: ruff-format + name: format with ruff + language: system + entry: ruff format --force-exclude + types: [python] + require_serial: true + + - id: uv-sync + name: update uv.lock and venv + pass_filenames: false + language: system + entry: uv sync + files: ^(uv\.lock|pyproject\.toml)$ + + - repo: https://github.com/gitleaks/gitleaks + rev: v8.28.0 + hooks: + - id: gitleaks diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..2c07333 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.11 diff --git a/.vscode/extensions.json b/.vscode/extensions.json new file mode 100644 index 0000000..933c580 --- /dev/null +++ b/.vscode/extensions.json @@ -0,0 +1,5 @@ +{ + "recommendations": [ + "ms-vscode-remote.remote-containers", + ] +} diff --git a/.vscode/launch.json b/.vscode/launch.json new file mode 100644 index 0000000..7d563e0 --- /dev/null +++ b/.vscode/launch.json @@ -0,0 +1,19 @@ +{ + // Use IntelliSense to learn about possible attributes. + // Hover to view descriptions of existing attributes. + // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387 + "version": "0.2.0", + "configurations": [ + { + "name": "Debug Unit Test", + "type": "debugpy", + "request": "launch", + "justMyCode": false, + "program": "${file}", + "purpose": [ + "debug-test" + ], + "console": "integratedTerminal", + } + ] +} diff --git a/.vscode/settings.json b/.vscode/settings.json new file mode 100644 index 0000000..101c75f --- /dev/null +++ b/.vscode/settings.json @@ -0,0 +1,12 @@ +{ + "python.testing.unittestEnabled": false, + "python.testing.pytestEnabled": true, + "editor.formatOnSave": true, + "editor.codeActionsOnSave": { + "source.organizeImports": "explicit" + }, + "files.insertFinalNewline": true, + "[python]": { + "editor.defaultFormatter": "charliermarsh.ruff", + }, +} diff --git a/.vscode/tasks.json b/.vscode/tasks.json new file mode 100644 index 0000000..c999e86 --- /dev/null +++ b/.vscode/tasks.json @@ -0,0 +1,16 @@ +// See https://go.microsoft.com/fwlink/?LinkId=733558 +// for the documentation about the tasks.json format +{ + "version": "2.0.0", + "tasks": [ + { + "type": "shell", + "label": "Tests, lint and docs", + "command": "tox -p", + "options": { + "cwd": "${workspaceRoot}" + }, + "problemMatcher": [], + } + ] +} diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 0000000..5e0ccfc --- /dev/null +++ b/Dockerfile @@ -0,0 +1,44 @@ +# The devcontainer should use the developer target and run as root with podman +# or docker with user namespaces. +FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer + +# Add any system dependencies for the developer/build environment here +RUN apt-get update -y && apt-get install -y --no-install-recommends \ + graphviz \ + && apt-get dist-clean + +# The build stage installs the context into the venv +FROM developer AS build + +# Change the working directory to the `app` directory +# and copy in the project +WORKDIR /app +COPY . /app +RUN chmod o+wrX . + +# Tell uv sync to install python in a known location so we can copy it out later +ENV UV_PYTHON_INSTALL_DIR=/python + +# Sync the project without its dev dependencies +RUN --mount=type=cache,target=/root/.cache/uv \ + uv sync --locked --no-editable --no-dev + + +# The runtime stage copies the built venv into a runtime container +FROM ubuntu:noble AS runtime + +# Add apt-get system dependecies for runtime here if needed +# RUN apt-get update -y && apt-get install -y --no-install-recommends \ +# some-library \ +# && apt-get dist-clean + +# Copy the python installation from the build stage +COPY --from=build /python /python + +# Copy the environment, but not the source code +COPY --from=build /app/.venv /app/.venv +ENV PATH=/app/.venv/bin:$PATH + +# change this entrypoint if it is not the same as the repo +ENTRYPOINT ["pyburt"] +CMD ["--version"] diff --git a/README.md b/README.md index 7f1f293..c055143 100644 --- a/README.md +++ b/README.md @@ -1,34 +1,20 @@ -[![pipeline status](https://gitlab.diamond.ac.uk/controls/python3/pyburt/badges/master/pipeline.svg)](https://gitlab.diamond.ac.uk/controls/python3/pyburt/commits/master) -[![coverage report](https://gitlab.diamond.ac.uk/controls/python3/pyburt/badges/master/coverage.svg)](https://gitlab.diamond.ac.uk/controls/python3/pyburt/commits/master) -[![Documentation Status](https://readthedocs.org/projects/pyburt/badge/?version=latest)](https://pyburt.readthedocs.io/en/latest/?badge=latest) -[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0) -[![Python 3.7](https://img.shields.io/badge/python-3.7-blueviolet.svg)](https://www.python.org/downloads/release/python-373/) -[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/ambv/black) +[![CI](https://github.com/DiamondLightSource/pyburt/actions/workflows/ci.yml/badge.svg)](https://github.com/DiamondLightSource/pyburt/actions/workflows/ci.yml) +[![Coverage](https://codecov.io/gh/DiamondLightSource/pyburt/branch/main/graph/badge.svg)](https://codecov.io/gh/DiamondLightSource/pyburt) -# pyburt - -**pyburt** is the Python version of the Burt EPICS extension. It utilises the -[cothread](https://cothread.readthedocs.io/en/latest/) python library for -Channel Access operations. +[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://www.apache.org/licenses/LICENSE-2.0) -## Documentation +# pyburt -Full documentation is available at [readthedocs](https://readthedocs.org/projects/pyburt/). +Python version of the BackUp and ResTore tool -## Installation +This is where you should write a short paragraph that describes what your module does, +how it does it, and why people should use it. -```bash -$ pipenv install pyburt -``` +Source | +:---: | :---: +Docker | `docker run ghcr.io/diamondlightsource/pyburt:latest` +Releases | -## Development - -```bash -$ git clone git@gitlab.diamond.ac.uk:controls/python3/pyburt.git -$ cd pyburt -$ pipenv install -d -$ python setup.py install -``` ## API Usage @@ -87,25 +73,9 @@ optional arguments: -l L Optional restore log file destination. ``` -## License - -See [LICENSE](). - -### Build - -To build the Sphinx documentation: - -```bash -$ pipenv shell -(pyburt) $ cd docs -(pyburt) $ make html -``` - -The generated pages are in `docs/_build/html`. +## Tests -### Tests - -##### Unit Tests +#### Unit Tests To run the core pytest unit tests: ```bash @@ -114,7 +84,7 @@ $ pipenv run unit-tests Note: the unit tests should be run from the root project directory. -##### DLS Integration Tests +#### DLS Integration Tests There are separate DLS integration tests for pyburt. These tests run snapshot and restore operations against a soft IOC (see `tests/integration/softioc.py`). @@ -124,15 +94,3 @@ To run both integration and unit tests: ```bash $ pipenv run tests ``` - -## Developing outside Diamond - -At present `Pipfile.lock` contains Diamond dependencies. To use a development -environment outside Diamond, you need Python 3.7 or greater and Pipenv installed. Then - -```bash -$ pipenv install --skip-lock --dev -$ pipenv run tests -``` - -If the tests pass then your development environment is set up correctly. diff --git a/catalog-info.yaml b/catalog-info.yaml new file mode 100644 index 0000000..b4fad42 --- /dev/null +++ b/catalog-info.yaml @@ -0,0 +1,10 @@ +apiVersion: backstage.io/v1alpha1 +kind: Component +metadata: + name: pyburt + title: pyburt + description: Python version of the BackUp and ResTore tool +spec: + type: application + lifecycle: production + owner: group:default/high-level-apps diff --git a/pyproject.toml b/pyproject.toml index 07de284..d134c3a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,3 +1,135 @@ [build-system] -requires = ["setuptools", "wheel"] -build-backend = "setuptools.build_meta" \ No newline at end of file +requires = ["setuptools>=64", "setuptools_scm[toml]>=8"] +build-backend = "setuptools.build_meta" + +[project] +name = "pyburt" +classifiers = [ + "Development Status :: 3 - Alpha", + "License :: OSI Approved :: Apache Software License", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: 3.13", +] +description = "Python version of the BackUp and ResTore tool" +dependencies = [] # Add project dependencies here, e.g. ["click", "numpy"] +dynamic = ["version"] +license.file = "LICENSE" +readme = "README.md" +requires-python = ">=3.11" + +[dependency-groups] +dev = [ + "copier", + "mypy", + "pre-commit", + "pytest", + "pytest-cov", + "ruff", + "tox-uv", + "types-mock", +] + +[project.scripts] +pyburt = "pyburt.__main__:main" + +[project.urls] +GitHub = "https://github.com/DiamondLightSource/pyburt" + +[[project.authors]] # Further authors may be added by duplicating this section +email = "diamhighlvlapps@diamond.ac.uk" +name = "High Level Apps" + +[tool.setuptools_scm] +version_file = "src/pyburt/_version.py" + +[tool.mypy] +ignore_missing_imports = true # Ignore missing stubs in imported modules + +[tool.pytest.ini_options] +# Run pytest with all our checkers, and don't spam us with massive tracebacks on error +addopts = """ + --tb=native -vv + """ +# https://iscinumpy.gitlab.io/post/bound-version-constraints/#watch-for-warnings +filterwarnings = "error" +# Doctest python code in docs, python code in src docstrings, test functions in tests +testpaths = "docs src tests" + +[tool.coverage.run] +patch = ["subprocess"] +data_file = "/tmp/pyburt.coverage" + +[tool.coverage.paths] +# Tests are run from installed location, map back to the src directory +source = ["src", "**/site-packages/"] + +[tool.tox] +skipsdist = true +# envs to runs automatically with tox -p +env_list = ["pre-commit", "type-checking", "tests"] + +[tool.tox.env_run_base] +# Pass all environment variables to the test environments +passenv = ["*"] + +[tool.tox.env.pre-commit] +description = "Run pre-commit on all files" +commands = [ + [ + "pre-commit", + "run", + "--all-files", + "--show-diff-on-failure", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.type-checking] +description = "Run mypy" +commands = [ + [ + "mypy", + "src", + "tests", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.tests] +description = "Run tests with coverage" +commands = [ + [ + "pytest", + "--cov=pyburt", + "--cov-report", + "term", + "--cov-report", + "xml:cov.xml", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.ruff] +src = ["src", "tests"] +line-length = 88 +lint.select = [ + "B", # flake8-bugbear - https://docs.astral.sh/ruff/rules/#flake8-bugbear-b + "C4", # flake8-comprehensions - https://docs.astral.sh/ruff/rules/#flake8-comprehensions-c4 + "E", # pycodestyle errors - https://docs.astral.sh/ruff/rules/#error-e + "F", # pyflakes rules - https://docs.astral.sh/ruff/rules/#pyflakes-f + "N", # pep8-naming - https://docs.astral.sh/ruff/rules/#pep8-naming-n + "W", # pycodestyle warnings - https://docs.astral.sh/ruff/rules/#warning-w + "I", # isort - https://docs.astral.sh/ruff/rules/#isort-i + "UP", # pyupgrade - https://docs.astral.sh/ruff/rules/#pyupgrade-up + "SLF", # self - https://docs.astral.sh/ruff/settings/#lintflake8-self +] + +[tool.ruff.lint.per-file-ignores] +# By default, private member access is allowed in tests +# See https://github.com/DiamondLightSource/python-copier-template/issues/154 +# Remove this line to forbid private member access in tests +"tests/**/*" = ["SLF001"] diff --git a/renovate.json b/renovate.json new file mode 100644 index 0000000..9f40897 --- /dev/null +++ b/renovate.json @@ -0,0 +1,39 @@ +{ + "$schema": "https://docs.renovatebot.com/renovate-schema.json", + "extends": [ + "config:recommended" + ], + "lockFileMaintenance": { + "description": "Keep uv.lock up to date, merging if tests pass", + "enabled": true, + "automerge": true + }, + "packageRules": [ + { + "description": "Disable python version as that is managed by python-copier-template", + "matchManagers": [ + "pyenv" + ], + "enabled": false + }, + { + "description": "Disable github actions that are managed by python-copier-template", + "matchPackageNames": [ + "actions/checkout", + "astral-sh/setup-uv", + "actions/upload-artifact", + "actions/download-artifact", + "softprops/action-gh-release", + "codecov/codecov-action", + "docker/setup-buildx-action", + "docker/login-action", + "docker/build-push-action", + "docker/metadata-action" + ], + "matchManagers": [ + "github-actions" + ], + "enabled": false + } + ] +} diff --git a/src/pyburt/__init__.py b/src/pyburt/__init__.py new file mode 100644 index 0000000..a2ffbf3 --- /dev/null +++ b/src/pyburt/__init__.py @@ -0,0 +1,11 @@ +"""Top level API. + +.. data:: __version__ + :type: str + + Version number as calculated by https://github.com/pypa/setuptools_scm +""" + +from ._version import __version__ + +__all__ = ["__version__"] diff --git a/src/pyburt/__main__.py b/src/pyburt/__main__.py new file mode 100644 index 0000000..78c0c85 --- /dev/null +++ b/src/pyburt/__main__.py @@ -0,0 +1,24 @@ +"""Interface for ``python -m pyburt``.""" + +from argparse import ArgumentParser +from collections.abc import Sequence + +from . import __version__ + +__all__ = ["main"] + + +def main(args: Sequence[str] | None = None) -> None: + """Argument parser for the CLI.""" + parser = ArgumentParser() + parser.add_argument( + "-v", + "--version", + action="version", + version=__version__, + ) + parser.parse_args(args) + + +if __name__ == "__main__": + main() diff --git a/tests/test_cli.py b/tests/test_cli.py new file mode 100644 index 0000000..b1463c5 --- /dev/null +++ b/tests/test_cli.py @@ -0,0 +1,9 @@ +import subprocess +import sys + +from pyburt import __version__ + + +def test_cli_version(): + cmd = [sys.executable, "-m", "pyburt", "--version"] + assert subprocess.check_output(cmd).decode().strip() == __version__ diff --git a/uv.lock b/uv.lock new file mode 100644 index 0000000..9431a63 --- /dev/null +++ b/uv.lock @@ -0,0 +1,3 @@ +version = 1 +revision = 3 +requires-python = ">=3.11" From a9b8b60a30a30b99eb09995a652d4280e6dd9c7d Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Fri, 13 Mar 2026 14:29:47 +0000 Subject: [PATCH 02/17] Move pyburt source code into src directory --- burt/__init__.py | 24 ------ burt/_version_git.py | 97 ------------------------ src/pyburt/__init__.py | 34 ++++++--- {burt => src/pyburt}/checks.py | 0 {burt => src/pyburt}/config/__init__.py | 0 {burt => src/pyburt}/config/logconfig.py | 0 {burt => src/pyburt}/consts.py | 0 {burt => src/pyburt}/parsers/__init__.py | 0 {burt => src/pyburt}/parsers/check.py | 0 {burt => src/pyburt}/parsers/parser.py | 0 {burt => src/pyburt}/parsers/req.py | 0 {burt => src/pyburt}/parsers/rgr.py | 0 {burt => src/pyburt}/parsers/rqg.py | 0 {burt => src/pyburt}/parsers/snap.py | 0 {burt => src/pyburt}/read.py | 0 {burt => src/pyburt}/utils/__init__.py | 0 {burt => src/pyburt}/utils/file.py | 0 {burt => src/pyburt}/utils/utils.py | 0 {burt => src/pyburt}/write.py | 0 19 files changed, 24 insertions(+), 131 deletions(-) delete mode 100644 burt/__init__.py delete mode 100644 burt/_version_git.py rename {burt => src/pyburt}/checks.py (100%) rename {burt => src/pyburt}/config/__init__.py (100%) rename {burt => src/pyburt}/config/logconfig.py (100%) rename {burt => src/pyburt}/consts.py (100%) rename {burt => src/pyburt}/parsers/__init__.py (100%) rename {burt => src/pyburt}/parsers/check.py (100%) rename {burt => src/pyburt}/parsers/parser.py (100%) rename {burt => src/pyburt}/parsers/req.py (100%) rename {burt => src/pyburt}/parsers/rgr.py (100%) rename {burt => src/pyburt}/parsers/rqg.py (100%) rename {burt => src/pyburt}/parsers/snap.py (100%) rename {burt => src/pyburt}/read.py (100%) rename {burt => src/pyburt}/utils/__init__.py (100%) rename {burt => src/pyburt}/utils/file.py (100%) rename {burt => src/pyburt}/utils/utils.py (100%) rename {burt => src/pyburt}/write.py (100%) diff --git a/burt/__init__.py b/burt/__init__.py deleted file mode 100644 index 93bb129..0000000 --- a/burt/__init__.py +++ /dev/null @@ -1,24 +0,0 @@ -"""The top-level burt package.""" -from burt._version_git import __version__ # noqa -from burt.checks import CheckFailedException, check -from burt.parsers.check import CheckParser -from burt.parsers.req import ReqParser -from burt.parsers.rgr import RgrParser -from burt.parsers.rqg import RqgParser -from burt.parsers.snap import SnapParser -from burt.read import take_snapshot, take_snapshot_group -from burt.write import restore, restore_group - -__all__ = [ - "restore", - "restore_group", - "take_snapshot", - "take_snapshot_group", - "check", - "CheckFailedException", - "ReqParser", - "SnapParser", - "RgrParser", - "RqgParser", - "CheckParser", -] diff --git a/burt/_version_git.py b/burt/_version_git.py deleted file mode 100644 index ec811d1..0000000 --- a/burt/_version_git.py +++ /dev/null @@ -1,97 +0,0 @@ -# Compute a version number from a git repo or archive - -# This file is released into the public domain. Generated by: -# versiongit-1.0 (https://github.com/dls-controls/versiongit) -import os -import re -import sys -from subprocess import STDOUT, CalledProcessError, check_output - -# These will be filled in if git archive is run or by setup.py cmdclasses -GIT_REFS = "$Format:%D$" -GIT_SHA1 = "$Format:%h$" - -# Git describe gives us sha1, last version-like tag, and commits since then -CMD = "git describe --tags --dirty --always --long --match=[0-9]*[-.][0-9]*" - - -def get_version_from_git(path=None): - """Try to parse version from git describe, fallback to git archive tags""" - tag, plus, suffix = "0.0", "untagged", "" - if not GIT_SHA1.startswith("$"): - # git archive or the cmdclasses below have filled in these strings - sha1 = GIT_SHA1 - for ref_name in GIT_REFS.split(", "): - if ref_name.startswith("tag: "): - # git from 1.8.3 onwards labels archive tags "tag: TAGNAME" - tag, plus = ref_name[5:], "0" - else: - if path is None: - # If no path to git repo, choose the directory this file is in - path = os.path.dirname(os.path.abspath(__file__)) - # output is TAG-NUM-gHEX[-dirty] or HEX[-dirty] - try: - cmd_out = check_output(CMD.split(), stderr=STDOUT, cwd=path) - except Exception as e: - sys.stderr.write("%s: %s\n" % (type(e).__name__, str(e))) - if isinstance(e, CalledProcessError): - sys.stderr.write("-> %s" % e.output.decode()) - return "0.0+unknown", None, e - else: - out = cmd_out.decode().strip() - if out.endswith("-dirty"): - out = out[:-6] - suffix = ".dirty" - if "-" in out: - # There is a tag, extract it and the other pieces - match = re.search(r"^(.+)-(\d+)-g([0-9a-f]+)$", out) - tag, plus, sha1 = match.groups() - else: - # No tag, just sha1 - sha1 = out - # Replace dashes in tag for dots - tag = tag.replace("-", ".") - if plus != "0" or suffix: - # Not on a tag, add additional info - tag = "%(tag)s+%(plus)s.g%(sha1)s%(suffix)s" % locals() - return tag, sha1, None - - -__version__, git_sha1, git_error = get_version_from_git() - - -def get_cmdclass(build_py=None, sdist=None): - """Create cmdclass dict to pass to setuptools.setup that will write a - _version_static.py file in our resultant sdist, wheel or egg""" - if build_py is None: - from setuptools.command.build_py import build_py - if sdist is None: - from setuptools.command.sdist import sdist - - def make_version_static(base_dir, pkg): - vg = os.path.join(base_dir, pkg.split(".")[0], "_version_git.py") - if os.path.isfile(vg): - lines = open(vg).readlines() - with open(vg, "w") as f: - for line in lines: - # Replace GIT_* with static versions - if line.startswith("GIT_SHA1 = "): - f.write("GIT_SHA1 = '%s'\n" % git_sha1) - elif line.startswith("GIT_REFS = "): - f.write("GIT_REFS = 'tag: %s'\n" % __version__) - else: - f.write(line) - - class BuildPy(build_py): - def run(self): - build_py.run(self) - for pkg in self.packages: - make_version_static(self.build_lib, pkg) - - class Sdist(sdist): - def make_release_tree(self, base_dir, files): - sdist.make_release_tree(self, base_dir, files) - for pkg in self.distribution.packages: - make_version_static(base_dir, pkg) - - return dict(build_py=BuildPy, sdist=Sdist) diff --git a/src/pyburt/__init__.py b/src/pyburt/__init__.py index a2ffbf3..68d2d06 100644 --- a/src/pyburt/__init__.py +++ b/src/pyburt/__init__.py @@ -1,11 +1,25 @@ -"""Top level API. +"""The top-level burt package.""" +from burt._version import __version__ # noqa +from burt.checks import CheckFailedException, check +from burt.parsers.check import CheckParser +from burt.parsers.req import ReqParser +from burt.parsers.rgr import RgrParser +from burt.parsers.rqg import RqgParser +from burt.parsers.snap import SnapParser +from burt.read import take_snapshot, take_snapshot_group +from burt.write import restore, restore_group -.. data:: __version__ - :type: str - - Version number as calculated by https://github.com/pypa/setuptools_scm -""" - -from ._version import __version__ - -__all__ = ["__version__"] +__all__ = [ + "restore", + "restore_group", + "take_snapshot", + "take_snapshot_group", + "check", + "CheckFailedException", + "ReqParser", + "SnapParser", + "RgrParser", + "RqgParser", + "CheckParser", + "__version__" +] diff --git a/burt/checks.py b/src/pyburt/checks.py similarity index 100% rename from burt/checks.py rename to src/pyburt/checks.py diff --git a/burt/config/__init__.py b/src/pyburt/config/__init__.py similarity index 100% rename from burt/config/__init__.py rename to src/pyburt/config/__init__.py diff --git a/burt/config/logconfig.py b/src/pyburt/config/logconfig.py similarity index 100% rename from burt/config/logconfig.py rename to src/pyburt/config/logconfig.py diff --git a/burt/consts.py b/src/pyburt/consts.py similarity index 100% rename from burt/consts.py rename to src/pyburt/consts.py diff --git a/burt/parsers/__init__.py b/src/pyburt/parsers/__init__.py similarity index 100% rename from burt/parsers/__init__.py rename to src/pyburt/parsers/__init__.py diff --git a/burt/parsers/check.py b/src/pyburt/parsers/check.py similarity index 100% rename from burt/parsers/check.py rename to src/pyburt/parsers/check.py diff --git a/burt/parsers/parser.py b/src/pyburt/parsers/parser.py similarity index 100% rename from burt/parsers/parser.py rename to src/pyburt/parsers/parser.py diff --git a/burt/parsers/req.py b/src/pyburt/parsers/req.py similarity index 100% rename from burt/parsers/req.py rename to src/pyburt/parsers/req.py diff --git a/burt/parsers/rgr.py b/src/pyburt/parsers/rgr.py similarity index 100% rename from burt/parsers/rgr.py rename to src/pyburt/parsers/rgr.py diff --git a/burt/parsers/rqg.py b/src/pyburt/parsers/rqg.py similarity index 100% rename from burt/parsers/rqg.py rename to src/pyburt/parsers/rqg.py diff --git a/burt/parsers/snap.py b/src/pyburt/parsers/snap.py similarity index 100% rename from burt/parsers/snap.py rename to src/pyburt/parsers/snap.py diff --git a/burt/read.py b/src/pyburt/read.py similarity index 100% rename from burt/read.py rename to src/pyburt/read.py diff --git a/burt/utils/__init__.py b/src/pyburt/utils/__init__.py similarity index 100% rename from burt/utils/__init__.py rename to src/pyburt/utils/__init__.py diff --git a/burt/utils/file.py b/src/pyburt/utils/file.py similarity index 100% rename from burt/utils/file.py rename to src/pyburt/utils/file.py diff --git a/burt/utils/utils.py b/src/pyburt/utils/utils.py similarity index 100% rename from burt/utils/utils.py rename to src/pyburt/utils/utils.py diff --git a/burt/write.py b/src/pyburt/write.py similarity index 100% rename from burt/write.py rename to src/pyburt/write.py From bf6d12c9793291b6415a7bbf0e7761ddc0819118 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Fri, 13 Mar 2026 16:08:49 +0000 Subject: [PATCH 03/17] Switch python build config to pyproject.toml Also apply ruff formatting --- pyproject.toml | 4 +- setup.cfg | 51 -- setup.py | 16 - src/pyburt/__init__.py | 3 +- src/pyburt/config/logconfig.py | 3 +- src/pyburt/parsers/__init__.py | 1 + src/pyburt/parsers/check.py | 5 +- src/pyburt/parsers/parser.py | 17 +- src/pyburt/parsers/req.py | 3 +- src/pyburt/parsers/rgr.py | 5 +- src/pyburt/parsers/rqg.py | 3 +- src/pyburt/parsers/snap.py | 5 +- src/pyburt/read.py | 27 +- src/pyburt/utils/file.py | 1 + src/pyburt/write.py | 29 +- uv.lock | 1141 ++++++++++++++++++++++++++++++++ 16 files changed, 1199 insertions(+), 115 deletions(-) delete mode 100644 setup.cfg delete mode 100644 setup.py diff --git a/pyproject.toml b/pyproject.toml index d134c3a..594b8ad 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,7 +12,7 @@ classifiers = [ "Programming Language :: Python :: 3.13", ] description = "Python version of the BackUp and ResTore tool" -dependencies = [] # Add project dependencies here, e.g. ["click", "numpy"] +dependencies = ["cothread>=2.15", "pygelf"] # Add project dependencies here, e.g. ["click", "numpy"] dynamic = ["version"] license.file = "LICENSE" readme = "README.md" @@ -32,6 +32,8 @@ dev = [ [project.scripts] pyburt = "pyburt.__main__:main" +burt-read = "pyburt.read:main" +burt-write = "pyburt.write:main" [project.urls] GitHub = "https://github.com/DiamondLightSource/pyburt" diff --git a/setup.cfg b/setup.cfg deleted file mode 100644 index 6d60b86..0000000 --- a/setup.cfg +++ /dev/null @@ -1,51 +0,0 @@ -[metadata] -name = pyburt -description = Python version of BURT -author = Ito Alcuaz -author_email = ito.alcuaz@diamond.ac.uk -license = Apache -url = https://gitlab.diamond.ac.uk/controls/python3/pyburt - -[options] -packages = find: -include_package_data = False -install_requires = - cothread>=2.15 - pygelf - -[options.packages.find] -# Don't include our tests directory in the distribution -exclude = tests - -[options.entry_points] -console_scripts = - burt-read = burt.read:main - burt-write = burt.write:main - -[mypy] -# Ignore missing stubs for modules we use -ignore_missing_imports = True - -[isort] -profile=black -float_to_top=true -skip=setup.py,conf.py,build - -[flake8] -# Make flake8 respect black's line length (default 88), -max-line-length = 88 -extend-ignore = - E203, # See https://github.com/PyCQA/pycodestyle/issues/373 - F811, # support typing.overload decorator - F722, # allow Annotated[typ, some_func("some string")] -application-import-names = burt - -[tool:pytest] -# Run pytest with all our checkers, and don't spam us with massive tracebacks on error -addopts = - --tb=native -vv --flake8 --black --mypy --doctest-modules --doctest-glob="*.rst" - --cov=burt --cov-report term --cov-report xml:cov.xml - -[coverage:run] -# This is covered in the versiongit test suite so exclude it here -omit = */_version_git.py diff --git a/setup.py b/setup.py deleted file mode 100644 index c3362d6..0000000 --- a/setup.py +++ /dev/null @@ -1,16 +0,0 @@ -import os -import sys - -from setuptools import setup - -# Place the directory containing _version_git on the path -for path, _, filenames in os.walk(os.path.dirname(os.path.abspath(__file__))): - if "_version_git.py" in filenames: - sys.path.append(path) - break - -from _version_git import __version__, get_cmdclass # noqa - -# Setup information is stored in setup.cfg but this function call -# is still necessary. -setup(cmdclass=get_cmdclass(), version=__version__) diff --git a/src/pyburt/__init__.py b/src/pyburt/__init__.py index 68d2d06..5c1b5db 100644 --- a/src/pyburt/__init__.py +++ b/src/pyburt/__init__.py @@ -1,4 +1,5 @@ """The top-level burt package.""" + from burt._version import __version__ # noqa from burt.checks import CheckFailedException, check from burt.parsers.check import CheckParser @@ -21,5 +22,5 @@ "RgrParser", "RqgParser", "CheckParser", - "__version__" + "__version__", ] diff --git a/src/pyburt/config/logconfig.py b/src/pyburt/config/logconfig.py index 29d4dfd..776b648 100644 --- a/src/pyburt/config/logconfig.py +++ b/src/pyburt/config/logconfig.py @@ -1,4 +1,5 @@ """Modified logconfig.py from dls_ade.""" + import getpass import logging import logging.config @@ -12,7 +13,7 @@ GRAYLOG_PORT = 12228 DEFAULT_LOG_FORMAT = ( - "%(asctime)5s - %(filename)s:%(lineno)d - %(" "levelname)5s - %(message)s" + "%(asctime)5s - %(filename)s:%(lineno)d - %(levelname)5s - %(message)s" ) DEFAULT_CONFIG = { diff --git a/src/pyburt/parsers/__init__.py b/src/pyburt/parsers/__init__.py index 85fd47b..542acb9 100644 --- a/src/pyburt/parsers/__init__.py +++ b/src/pyburt/parsers/__init__.py @@ -1,4 +1,5 @@ """Parsers package.""" + from burt.parsers.parser import BurtParser, ParserException from burt.parsers.req import ReqParser from burt.parsers.rgr import RgrParser diff --git a/src/pyburt/parsers/check.py b/src/pyburt/parsers/check.py index 649ee95..8ae48e9 100644 --- a/src/pyburt/parsers/check.py +++ b/src/pyburt/parsers/check.py @@ -1,4 +1,5 @@ """Check parser class which reads the information from a .check BURT file.""" + from collections import namedtuple from burt.parsers import BurtParser, ParserException @@ -42,7 +43,7 @@ def __init__(self, path): path (str): The path to the .snap file. """ - super(CheckParser, self).__init__(path) + super().__init__(path) def get_header(self): """Get the .check file header. @@ -51,7 +52,7 @@ def get_header(self): namedtuple(super.HEADER): The .snap file header. """ - return super(CheckParser, self).HEADER( + return super().HEADER( self.CHECK_HEADER_START, (self.COMMENTS_PREFIX,), self.CHECK_HEADER_END ) diff --git a/src/pyburt/parsers/parser.py b/src/pyburt/parsers/parser.py index b49ef72..8088228 100644 --- a/src/pyburt/parsers/parser.py +++ b/src/pyburt/parsers/parser.py @@ -1,7 +1,8 @@ """Parsers package.""" + from abc import ABCMeta, abstractmethod from collections import namedtuple -from typing import Any, Dict, List, Tuple +from typing import Any # Global inline comment prefix. INLINE_COMMENT = "%" @@ -65,7 +66,7 @@ def get_header(self) -> "HEADER": """ return self.HEADER(None, None, None) - def parse(self) -> Tuple[Dict[str, List[str]], List[Any]]: + def parse(self) -> tuple[dict[str, list[str]], list[Any]]: """Parse the .* BURT file located at self.path. Returns: @@ -74,7 +75,7 @@ def parse(self) -> Tuple[Dict[str, List[str]], List[Any]]: If there is no header, the dict will be empty. """ - with open(self.path, "r") as f: + with open(self.path) as f: file_contents = f.read() if self.get_header() and self.get_header().prefixes is not None: @@ -88,7 +89,7 @@ def parse(self) -> Tuple[Dict[str, List[str]], List[Any]]: return header_vals, body_vals - def parse_header(self, header_lines) -> Dict[str, List[str]]: + def parse_header(self, header_lines) -> dict[str, list[str]]: """Parse the header portion of a .* BURT file. Args: @@ -102,7 +103,7 @@ def parse_header(self, header_lines) -> Dict[str, List[str]]: ParserException: If the header is malformed. """ - prefix_to_val: Dict[str, List[str]] = {} + prefix_to_val: dict[str, list[str]] = {} for line in header_lines: # Ugly wart of old style .snap files: directory line doesn't have a colon. @@ -129,7 +130,7 @@ def parse_header(self, header_lines) -> Dict[str, List[str]]: return prefix_to_val - def parse_body(self, body_lines) -> List[object]: + def parse_body(self, body_lines) -> list[object]: """Parse the body portion of a .* BURT file. Args: @@ -156,7 +157,7 @@ def parse_body(self, body_lines) -> List[object]: return body_objs - def _extract_header_and_body(self, file_contents) -> Tuple[List[str], List[str]]: + def _extract_header_and_body(self, file_contents) -> tuple[list[str], list[str]]: """Get the contents from a BURT file with both a header and a footer. Args: @@ -170,7 +171,7 @@ def _extract_header_and_body(self, file_contents) -> Tuple[List[str], List[str]] ParserException: If the BURT file is malformed. """ - if not (self.get_header().start_label in file_contents) and ( + if self.get_header().start_label not in file_contents and ( self.get_header().end_label in file_contents ): raise ParserException("Malformed BURT header.") diff --git a/src/pyburt/parsers/req.py b/src/pyburt/parsers/req.py index dc4fc73..c3e1326 100644 --- a/src/pyburt/parsers/req.py +++ b/src/pyburt/parsers/req.py @@ -1,4 +1,5 @@ """Request parser class which reads the information from a .req BURT file.""" + from collections import namedtuple from burt import consts @@ -31,7 +32,7 @@ def __init__(self, path): path (str): The path to the .req file. """ - super(ReqParser, self).__init__(path) + super().__init__(path) def read_body_line(self, line) -> "REQ_PV": """Store a PV entry in the .req file into a namedtuple object. diff --git a/src/pyburt/parsers/rgr.py b/src/pyburt/parsers/rgr.py index e562bb0..30de88c 100644 --- a/src/pyburt/parsers/rgr.py +++ b/src/pyburt/parsers/rgr.py @@ -1,4 +1,5 @@ """Parser class which reads the information from a .rgr BURT file.""" + from burt.parsers import BurtParser, ParserException from burt.parsers.snap import SnapParser from burt.utils.file import is_check_file, is_snap_file @@ -38,7 +39,7 @@ def __init__(self, path): path (str): The path to the .rgr file. """ - super(RgrParser, self).__init__(path) + super().__init__(path) self._is_snap_section = False @@ -49,7 +50,7 @@ def get_header(self): namedtuple(super.HEADER): The .rgr file header. """ - return super(RgrParser, self).HEADER( + return super().HEADER( self.RGR_HEADER_START, (SnapParser.COMMENTS_PREFIX, self.RQG_PREFIX), self.RGR_HEADER_END, diff --git a/src/pyburt/parsers/rqg.py b/src/pyburt/parsers/rqg.py index 359b99f..0b0f5a6 100644 --- a/src/pyburt/parsers/rqg.py +++ b/src/pyburt/parsers/rqg.py @@ -1,4 +1,5 @@ """Parser class which reads the information from a .rqg BURT file.""" + from burt.utils.file import is_check_file, is_req_file from . import BurtParser, ParserException @@ -32,7 +33,7 @@ def __init__(self, path): path (str): The path to the .rgr file. """ - super(RqgParser, self).__init__(path) + super().__init__(path) self._is_req_section = False diff --git a/src/pyburt/parsers/snap.py b/src/pyburt/parsers/snap.py index 847417b..b45ca2f 100644 --- a/src/pyburt/parsers/snap.py +++ b/src/pyburt/parsers/snap.py @@ -1,4 +1,5 @@ """Snap parser class which reads the information from a .snap BURT file.""" + import re from collections import namedtuple @@ -53,7 +54,7 @@ def __init__(self, path): path (str): The path to the .snap file. """ - super(SnapParser, self).__init__(path) + super().__init__(path) def get_header(self): """Get the .snap file header. @@ -62,7 +63,7 @@ def get_header(self): namedtuple(super.HEADER): The .snap file header. """ - return super(SnapParser, self).HEADER( + return super().HEADER( self.SNAP_HEADER_START, ( self.TIME_PREFIX, diff --git a/src/pyburt/read.py b/src/pyburt/read.py index 0a1302e..028d26c 100644 --- a/src/pyburt/read.py +++ b/src/pyburt/read.py @@ -13,12 +13,18 @@ A request group .rqg file contains a collection of paths to .req files, and is used to create bulk snapshots. """ + import argparse import logging import os import time -from typing import Any, List, Tuple +from typing import Any +import burt +from burt.config import logconfig +from burt.parsers.snap import SnapParser as Snap +from burt.utils.file import is_req_file, is_rgr_file, is_rqg_file, is_snap_file +from burt.utils.utils import get_user_details from cothread.catools import ( DBR_CHAR, DBR_DOUBLE, @@ -30,12 +36,6 @@ caget, ) -import burt -from burt.config import logconfig -from burt.parsers.snap import SnapParser as Snap -from burt.utils.file import is_req_file, is_rgr_file, is_rqg_file, is_snap_file -from burt.utils.utils import get_user_details - # Scalar pv entries are shown as a 15 width precision number(s) in scientific notation. SNAP_PRECISION_LONG_PYFORMAT = "{:.15e}" SNAP_PRECISION_SHORT_PYFORMAT = "{:.6e}" @@ -46,12 +46,12 @@ class InvalidReadingException(Exception): def take_snapshot( - req_files: List[str], + req_files: list[str], snap_file: str, comments: str = None, keywords: str = None, compat: bool = False, -) -> List[str]: +) -> list[str]: """Save the PVs and their state to the specified snap file, with metadata. If more than one .req file is given as a list or iterable, then the snapshot values @@ -78,7 +78,7 @@ def take_snapshot( snap_header = _gen_snap_header(req_files, comments, keywords) logging.debug(f"Generated .snap header: {snap_header}") - all_req_failed_pvs: List[str] = [] + all_req_failed_pvs: list[str] = [] all_req_snap_footer_entries = [] for req_file in req_files: @@ -112,7 +112,7 @@ def take_snapshot_group( comments: str = None, keywords: str = None, check: bool = True, -) -> List[str]: +) -> list[str]: """Perform a BURT snapshot for each request file in the .rqg file. Args: @@ -137,7 +137,7 @@ def take_snapshot_group( raise NotImplementedError("Not yet implemented.") -def _check_snapshot_params(req_files: List[str], snap_file: str) -> None: +def _check_snapshot_params(req_files: list[str], snap_file: str) -> None: """Check take_snapshot parameters for validity. Args: @@ -324,7 +324,7 @@ def _gen_snap_footer(ca_readings, pv_entries, compat=False): def _ca_val_to_snap_entry( ca_reading: Any, requested_save_len: int, compat: bool -) -> Tuple[int, str]: +) -> tuple[int, str]: """Format a reading returned from caget into a string for a snap file. Cothread automatically converts a DBR channel access type into its python @@ -429,7 +429,6 @@ def _flatten_ca_array(ca_reading, requested_length, compat): # Adding EPICS null chars if applicable. # Note: Burt represents empty array elements as null zeroes for integer types. if len(ca_reading) < ca_reading.element_count: - # DBR_ENUM and DBR_ENUM_STR are never expected because we caget with # DBR_ENUM_STR as a return type request. if ca_reading.datatype in (DBR_SHORT, DBR_LONG, DBR_CHAR, DBR_STRING): diff --git a/src/pyburt/utils/file.py b/src/pyburt/utils/file.py index c6a6ff4..8ca4ba9 100644 --- a/src/pyburt/utils/file.py +++ b/src/pyburt/utils/file.py @@ -1,4 +1,5 @@ """BURT file related utility functions.""" + from os.path import isfile, splitext from burt import consts diff --git a/src/pyburt/write.py b/src/pyburt/write.py index da04eb3..2dbb0da 100644 --- a/src/pyburt/write.py +++ b/src/pyburt/write.py @@ -15,14 +15,20 @@ and some .check files which verifies certain preconditions prior to the restore operation proceeding. It is used for bulk restoring of PVs. """ + import argparse import logging import os import sys from collections import OrderedDict -from typing import Any, Dict, List, Optional, Union, cast +from typing import Any, Union, cast +import burt import cothread +from burt import consts +from burt.config import logconfig +from burt.parsers.snap import SnapParser +from burt.utils.file import is_check_file, is_null_char, is_rgr_file, is_snap_file from cothread.catools import ( DBR_CHAR, DBR_DOUBLE, @@ -35,16 +41,10 @@ connect, ) -import burt -from burt import consts -from burt.config import logconfig -from burt.parsers.snap import SnapParser -from burt.utils.file import is_check_file, is_null_char, is_rgr_file, is_snap_file - CaValue = Union[str, int, float] -def restore(snap_file: str) -> List[str]: +def restore(snap_file: str) -> list[str]: """Restores the state of the PVs in the .snap file. This function does nothing for PVs marked with RO or RON specifiers. @@ -73,7 +73,7 @@ def restore(snap_file: str) -> List[str]: pvs = _get_pvs_in_snap(snap_file) # Improve performance by putting all at once later on. - pvs_to_restore: Dict[str, Any] = OrderedDict() + pvs_to_restore: dict[str, Any] = OrderedDict() # Obtain for the channel type prior to the put for each pv, so we can put the # correct type. @@ -101,7 +101,7 @@ def restore(snap_file: str) -> List[str]: return failed_pvs -def restore_group(rgr_file: str, check: bool = True) -> List[str]: +def restore_group(rgr_file: str, check: bool = True) -> list[str]: """Perform BURT restore for each .snap file contained in the .rgr file. Cothread returns cothread.catools.ca_nothing upon a successful caput(s). @@ -127,7 +127,6 @@ def restore_group(rgr_file: str, check: bool = True) -> List[str]: all_failed_pvs = [] for file_path in body: - if check and is_check_file(file_path): burt.check(file_path) @@ -220,7 +219,7 @@ def _get_pvs_in_snap(snap_file): def _snap_entry_to_ca_type( pv_entry: SnapParser.SNAP_PV, datatype: int -) -> Union[CaValue, List[CaValue]]: +) -> CaValue | list[CaValue]: """Coerce the correct ca type from the channel type.""" # Array value. if pv_entry.dtype_len > 1: @@ -241,7 +240,7 @@ def _snap_entry_to_ca_type( stripped_converted_vals = converted_vals # Tell Mypy that we have removed the Nones. - return cast(List[CaValue], stripped_converted_vals) + return cast(list[CaValue], stripped_converted_vals) # Scalar value else: converted_val = _convert_to_ca_type(pv_entry.vals[0], datatype) @@ -254,13 +253,13 @@ def _snap_entry_to_ca_type( return converted_val -def _convert_to_ca_type(snap_val, datatype) 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burt}/config/__init__.py | 0 src/{pyburt => burt}/config/logconfig.py | 0 src/{pyburt => burt}/consts.py | 0 src/{pyburt => burt}/parsers/__init__.py | 0 src/{pyburt => burt}/parsers/check.py | 0 src/{pyburt => burt}/parsers/parser.py | 0 src/{pyburt => burt}/parsers/req.py | 0 src/{pyburt => burt}/parsers/rgr.py | 0 src/{pyburt => burt}/parsers/rqg.py | 0 src/{pyburt => burt}/parsers/snap.py | 0 src/{pyburt => burt}/read.py | 11 ++++++----- src/{pyburt => burt}/utils/__init__.py | 0 src/{pyburt => burt}/utils/file.py | 0 src/{pyburt => burt}/utils/utils.py | 0 src/{pyburt => burt}/write.py | 11 ++++++----- 18 files changed, 13 insertions(+), 11 deletions(-) rename src/{pyburt => burt}/__init__.py (100%) rename src/{pyburt => burt}/__main__.py (100%) rename src/{pyburt => burt}/checks.py (97%) rename src/{pyburt => burt}/config/__init__.py (100%) rename src/{pyburt => burt}/config/logconfig.py (100%) rename src/{pyburt => burt}/consts.py (100%) rename src/{pyburt => burt}/parsers/__init__.py (100%) rename src/{pyburt => burt}/parsers/check.py (100%) rename src/{pyburt => burt}/parsers/parser.py (100%) rename src/{pyburt => burt}/parsers/req.py (100%) rename src/{pyburt => burt}/parsers/rgr.py (100%) rename src/{pyburt => burt}/parsers/rqg.py (100%) rename src/{pyburt => burt}/parsers/snap.py (100%) rename src/{pyburt => burt}/read.py (99%) rename src/{pyburt => burt}/utils/__init__.py (100%) rename src/{pyburt => burt}/utils/file.py (100%) rename src/{pyburt => burt}/utils/utils.py (100%) rename src/{pyburt => burt}/write.py (99%) diff --git a/src/pyburt/__init__.py b/src/burt/__init__.py similarity index 100% rename from src/pyburt/__init__.py rename to src/burt/__init__.py diff --git a/src/pyburt/__main__.py b/src/burt/__main__.py similarity index 100% rename from src/pyburt/__main__.py rename to src/burt/__main__.py diff --git a/src/pyburt/checks.py b/src/burt/checks.py similarity index 97% rename from src/pyburt/checks.py rename to src/burt/checks.py index 483408a..8a486e2 100644 --- a/src/pyburt/checks.py +++ b/src/burt/checks.py @@ -25,7 +25,7 @@ def __init__(self, check_pv, msg=""): msg (str): Any other message. """ - super(CheckFailedException, self).__init__( + super().__init__( f"{check_pv.name} failed with target {check_pv.target} and " f"tolerance {check_pv.tolerance}. {msg}" ) diff --git a/src/pyburt/config/__init__.py b/src/burt/config/__init__.py similarity index 100% rename from src/pyburt/config/__init__.py rename to src/burt/config/__init__.py diff --git a/src/pyburt/config/logconfig.py b/src/burt/config/logconfig.py similarity index 100% rename from src/pyburt/config/logconfig.py rename to src/burt/config/logconfig.py diff --git a/src/pyburt/consts.py b/src/burt/consts.py similarity index 100% rename from src/pyburt/consts.py rename to src/burt/consts.py diff --git a/src/pyburt/parsers/__init__.py b/src/burt/parsers/__init__.py similarity index 100% rename from src/pyburt/parsers/__init__.py rename to src/burt/parsers/__init__.py diff --git a/src/pyburt/parsers/check.py b/src/burt/parsers/check.py similarity index 100% rename from src/pyburt/parsers/check.py rename to src/burt/parsers/check.py diff --git a/src/pyburt/parsers/parser.py b/src/burt/parsers/parser.py similarity index 100% rename from src/pyburt/parsers/parser.py rename to src/burt/parsers/parser.py diff --git a/src/pyburt/parsers/req.py b/src/burt/parsers/req.py similarity index 100% rename from src/pyburt/parsers/req.py rename to src/burt/parsers/req.py diff --git a/src/pyburt/parsers/rgr.py b/src/burt/parsers/rgr.py similarity index 100% rename from src/pyburt/parsers/rgr.py rename to src/burt/parsers/rgr.py diff --git a/src/pyburt/parsers/rqg.py b/src/burt/parsers/rqg.py similarity index 100% rename from src/pyburt/parsers/rqg.py rename to src/burt/parsers/rqg.py diff --git a/src/pyburt/parsers/snap.py b/src/burt/parsers/snap.py similarity index 100% rename from src/pyburt/parsers/snap.py rename to src/burt/parsers/snap.py diff --git a/src/pyburt/read.py b/src/burt/read.py similarity index 99% rename from src/pyburt/read.py rename to src/burt/read.py index 028d26c..74646d9 100644 --- a/src/pyburt/read.py +++ b/src/burt/read.py @@ -20,11 +20,6 @@ import time from typing import Any -import burt -from burt.config import logconfig -from burt.parsers.snap import SnapParser as Snap -from burt.utils.file import is_req_file, is_rgr_file, is_rqg_file, is_snap_file -from burt.utils.utils import get_user_details from cothread.catools import ( DBR_CHAR, DBR_DOUBLE, @@ -36,6 +31,12 @@ caget, ) +import burt +from burt.config import logconfig +from burt.parsers.snap import SnapParser as Snap +from burt.utils.file import is_req_file, is_rgr_file, is_rqg_file, is_snap_file +from burt.utils.utils import get_user_details + # Scalar pv entries are shown as a 15 width precision number(s) in scientific notation. SNAP_PRECISION_LONG_PYFORMAT = "{:.15e}" SNAP_PRECISION_SHORT_PYFORMAT = "{:.6e}" diff --git a/src/pyburt/utils/__init__.py b/src/burt/utils/__init__.py similarity index 100% rename from src/pyburt/utils/__init__.py rename to src/burt/utils/__init__.py diff --git a/src/pyburt/utils/file.py b/src/burt/utils/file.py similarity index 100% rename from src/pyburt/utils/file.py rename to src/burt/utils/file.py diff --git a/src/pyburt/utils/utils.py b/src/burt/utils/utils.py similarity index 100% rename from src/pyburt/utils/utils.py rename to src/burt/utils/utils.py diff --git a/src/pyburt/write.py b/src/burt/write.py similarity index 99% rename from src/pyburt/write.py rename to src/burt/write.py index 2dbb0da..9ff4524 100644 --- a/src/pyburt/write.py +++ b/src/burt/write.py @@ -23,12 +23,7 @@ from collections import OrderedDict from typing import Any, Union, cast -import burt import cothread -from burt import consts -from burt.config import logconfig -from burt.parsers.snap import SnapParser -from burt.utils.file import is_check_file, is_null_char, is_rgr_file, is_snap_file from cothread.catools import ( DBR_CHAR, DBR_DOUBLE, @@ -41,6 +36,12 @@ connect, ) +import burt +from burt import consts +from burt.config import logconfig +from burt.parsers.snap import SnapParser +from burt.utils.file import is_check_file, is_null_char, is_rgr_file, is_snap_file + CaValue = Union[str, int, float] From e75a54b956be2216c8829abc8534cc555e99bca8 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Fri, 13 Mar 2026 16:45:22 +0000 Subject: [PATCH 05/17] Fixes for running tests --- README.md | 5 ++- pyproject.toml | 16 ++++--- tests/{ => unit/burt}/test_cli.py | 4 +- uv.lock | 72 +++++++++++++++++++++++++++++++ 4 files changed, 88 insertions(+), 9 deletions(-) rename tests/{ => unit/burt}/test_cli.py (59%) diff --git a/README.md b/README.md index c055143..bd3fd91 100644 --- a/README.md +++ b/README.md @@ -74,12 +74,13 @@ optional arguments: ``` ## Tests +Before running any tests, make sure you build and run the devcontainer. #### Unit Tests To run the core pytest unit tests: ```bash -$ pipenv run unit-tests +$ pytest tests/unit/ ``` Note: the unit tests should be run from the root project directory. @@ -92,5 +93,5 @@ and restore operations against a soft IOC (see `tests/integration/softioc.py`). To run both integration and unit tests: ```bash -$ pipenv run tests +$ pytest ``` diff --git a/pyproject.toml b/pyproject.toml index 594b8ad..3e28228 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -12,7 +12,11 @@ classifiers = [ "Programming Language :: Python :: 3.13", ] description = "Python version of the BackUp and ResTore tool" -dependencies = ["cothread>=2.15", "pygelf"] # Add project dependencies here, e.g. ["click", "numpy"] +dependencies = [ + "cothread>=2.15", + "pygelf", + "epicscorelibs", +] # Add project dependencies here, e.g. ["click", "numpy"] dynamic = ["version"] license.file = "LICENSE" readme = "README.md" @@ -28,12 +32,14 @@ dev = [ "ruff", "tox-uv", "types-mock", + "mock", + "epicsdbbuilder", ] [project.scripts] -pyburt = "pyburt.__main__:main" -burt-read = "pyburt.read:main" -burt-write = "pyburt.write:main" +pyburt = "burt.__main__:main" +burt-read = "burt.read:main" +burt-write = "burt.write:main" [project.urls] GitHub = 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size = 23950, upload-time = "2026-02-11T01:16:00.295Z" }, +] + [[package]] name = "tomli" version = "2.4.0" From 3aad5035a169cee4dcbc8aebbe6f0d76d6f0f1bc Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Fri, 13 Mar 2026 16:46:46 +0000 Subject: [PATCH 06/17] Apply ruff formatting --- tests/conftest.py | 1 + tests/integration/burt/test_restore.py | 1 + tests/integration/burt/test_snapshot.py | 7 ++++--- tests/ioc_manager.py | 26 ++++++++++++------------- tests/unit/burt/test_check.py | 4 +++- tests/unit/burt/test_restore.py | 3 ++- tests/unit/burt/test_snapshot.py | 9 ++++----- tests/unit/parsers/test_check_parser.py | 1 + tests/unit/parsers/test_req_parser.py | 1 + tests/unit/parsers/test_rgr_parser.py | 1 + tests/unit/parsers/test_rqg_parser.py | 1 + tests/unit/parsers/test_snap_parser.py | 1 + tests/unit/utils/test_file.py | 1 + tests/utils.py | 1 + 14 files changed, 35 insertions(+), 23 deletions(-) diff --git a/tests/conftest.py b/tests/conftest.py index b7ed04d..59b67fd 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,4 +1,5 @@ """Test fixtures.""" + import os import pytest diff --git a/tests/integration/burt/test_restore.py b/tests/integration/burt/test_restore.py index 19683ad..1b2aa43 100755 --- a/tests/integration/burt/test_restore.py +++ b/tests/integration/burt/test_restore.py @@ -1,4 +1,5 @@ """Various integration tests for Pyburt restore which require a running IOC.""" + import itertools from random import randint diff --git a/tests/integration/burt/test_snapshot.py b/tests/integration/burt/test_snapshot.py index 131a85e..731c74f 100644 --- a/tests/integration/burt/test_snapshot.py +++ b/tests/integration/burt/test_snapshot.py @@ -1,4 +1,5 @@ """Various integration tests for Pyburt snapshots.""" + import os import pytest @@ -267,7 +268,7 @@ def test_header_against_burt(pyburt_tmpfile): "REQ_FILE": paths.BASIC_REQ, } - with open(pyburt_tmpfile, "r") as pyburt_out: + with open(pyburt_tmpfile) as pyburt_out: with open(paths.BURT_TEMPLATED_BASIC_SNAP) as burt_out: pyburt_out_header = pyburt_out.read().split(sp.SNAP_HEADER_END)[0] burt_out_header = ( @@ -296,8 +297,8 @@ def test_various_types_against_burt(pyburt_tmpfile): burt.take_snapshot([paths.VARIOUS_TYPES_REQ], pyburt_tmpfile) # Read into strings to discard time dependent header. - with open(pyburt_tmpfile, "r") as pyburt_out: - with open(paths.BURT_VARIOUS_TYPES_SNAP, "r") as burt_out: + with open(pyburt_tmpfile) as pyburt_out: + with open(paths.BURT_VARIOUS_TYPES_SNAP) as burt_out: pyburt_out_str = pyburt_out.read().split(sp.SNAP_HEADER_END)[1] burt_out_str = burt_out.read().split(sp.SNAP_HEADER_END)[1] diff --git a/tests/ioc_manager.py b/tests/ioc_manager.py index 5dea969..e297dd1 100644 --- a/tests/ioc_manager.py +++ b/tests/ioc_manager.py @@ -5,7 +5,7 @@ import time from dataclasses import dataclass, field from tempfile import NamedTemporaryFile -from typing import IO, Any, Dict, List, Optional +from typing import IO, Any import cothread from cothread import catools @@ -33,7 +33,7 @@ class Record: typ: str name: str - fields: Dict[str, Any] = field(default_factory=dict) + fields: dict[str, Any] = field(default_factory=dict) class IocManager: @@ -42,14 +42,14 @@ def __init__(self) -> None: IOC will start using defined EPICS environment variables. """ - self.record_list: List[Record] = [] + self.record_list: list[Record] = [] self.db_file: IO = NamedTemporaryFile("w+t") - self.process: Optional[subprocess.Popen] = None + self.process: subprocess.Popen | None = None def _add_record(self, typ, pv_name, **fields): - assert ( - not self.is_started() - ), f"Cannot add {typ} record to running IOC ({pv_name})" + assert not self.is_started(), ( + f"Cannot add {typ} record to running IOC ({pv_name})" + ) self.record_list.append(Record(typ, pv_name, fields)) def _generate_db_file(self) -> None: @@ -170,9 +170,9 @@ def add_longout_record(self, pv_name, **fields): def add_mbbi_record(self, pv_name, states, **fields): """Add a new mbbi PV record.""" nstates = len(states) - assert ( - nstates <= 16 - ), f"mbbi record does not support more than 16 states ({nstates} requested)" + assert nstates <= 16, ( + f"mbbi record does not support more than 16 states ({nstates} requested)" + ) states.extend([""] * (16 - nstates)) final_fields = self.build_mbbx_fields(states) @@ -183,9 +183,9 @@ def add_mbbi_record(self, pv_name, states, **fields): def add_mbbo_record(self, pv_name, states, **fields): """Add a new mbbo PV record.""" nstates = len(states) - assert ( - nstates <= 16 - ), f"mbbo record does not support more than 16 states ({nstates} requested)" + assert nstates <= 16, ( + f"mbbo record does not support more than 16 states ({nstates} requested)" + ) states.extend([""] * (16 - nstates)) final_fields = self.build_mbbx_fields(states) diff --git a/tests/unit/burt/test_check.py b/tests/unit/burt/test_check.py index a8b7e03..96b247f 100644 --- a/tests/unit/burt/test_check.py +++ b/tests/unit/burt/test_check.py @@ -1,5 +1,7 @@ """Various tests for the check file functionality.""" -import mock + +from unittest import mock + import pytest import burt diff --git a/tests/unit/burt/test_restore.py b/tests/unit/burt/test_restore.py index ffa1d39..aba9f47 100644 --- a/tests/unit/burt/test_restore.py +++ b/tests/unit/burt/test_restore.py @@ -1,8 +1,9 @@ """Unit tests for the BURT restore functionality.""" + import io +from unittest import mock import cothread -import mock import pytest from cothread.catools import ( DBR_CHAR, diff --git a/tests/unit/burt/test_snapshot.py b/tests/unit/burt/test_snapshot.py index 20c4ac3..8d7af49 100644 --- a/tests/unit/burt/test_snapshot.py +++ b/tests/unit/burt/test_snapshot.py @@ -1,8 +1,9 @@ """Various tests for the main burt module.""" + import os +from unittest import mock import cothread -import mock import pytest from cothread.catools import ( DBR_CHAR, @@ -174,8 +175,7 @@ def test_burtinter_req_file_prefix_compatability(): try: _old_req_file_header_burtinter_code(bad_req_entry_1) pytest.fail( - "This test should throw as old burtinter cannot handle more than " - "one space." + "This test should throw as old burtinter cannot handle more than one space." ) except IndexError: # Expected. @@ -184,8 +184,7 @@ def test_burtinter_req_file_prefix_compatability(): try: _old_req_file_header_burtinter_code(bad_req_entry_2) pytest.fail( - "This test should throw as old burtinter cannot handle more than " - "one space." + "This test should throw as old burtinter cannot handle more than one space." ) except IndexError: # Expected. diff --git a/tests/unit/parsers/test_check_parser.py b/tests/unit/parsers/test_check_parser.py index 0f1baa0..0d252cc 100644 --- a/tests/unit/parsers/test_check_parser.py +++ b/tests/unit/parsers/test_check_parser.py @@ -1,4 +1,5 @@ """Various tests for the check parser.""" + import pytest from burt import CheckParser as cp diff --git a/tests/unit/parsers/test_req_parser.py b/tests/unit/parsers/test_req_parser.py index 42b991d..67fda41 100644 --- a/tests/unit/parsers/test_req_parser.py +++ b/tests/unit/parsers/test_req_parser.py @@ -1,4 +1,5 @@ """Various tests for the req parser.""" + import pytest from burt import ReqParser as rp diff --git a/tests/unit/parsers/test_rgr_parser.py b/tests/unit/parsers/test_rgr_parser.py index 5a0122e..45bd02f 100644 --- a/tests/unit/parsers/test_rgr_parser.py +++ b/tests/unit/parsers/test_rgr_parser.py @@ -1,4 +1,5 @@ """Various tests for the rgr parser.""" + import pytest import burt diff --git a/tests/unit/parsers/test_rqg_parser.py b/tests/unit/parsers/test_rqg_parser.py index 2169fe3..a5d3b02 100644 --- a/tests/unit/parsers/test_rqg_parser.py +++ b/tests/unit/parsers/test_rqg_parser.py @@ -1,4 +1,5 @@ """Various tests for the rqg parser.""" + import pytest import burt diff --git a/tests/unit/parsers/test_snap_parser.py b/tests/unit/parsers/test_snap_parser.py index f09042f..3678099 100644 --- a/tests/unit/parsers/test_snap_parser.py +++ b/tests/unit/parsers/test_snap_parser.py @@ -1,4 +1,5 @@ """Various tests for the snap parser.""" + import pytest import burt diff --git a/tests/unit/utils/test_file.py b/tests/unit/utils/test_file.py index 8a6123b..e378f14 100644 --- a/tests/unit/utils/test_file.py +++ b/tests/unit/utils/test_file.py @@ -1,4 +1,5 @@ """Various tests for the utils file.""" + import burt.utils.file as f diff --git a/tests/utils.py b/tests/utils.py index 53cb3e7..5bd3119 100644 --- a/tests/utils.py +++ b/tests/utils.py @@ -23,6 +23,7 @@ def aug_val(val, ok=True, count=1, dtype=DBR_FLOAT): dtype: cothread DBR type """ + # noqa D202 https://github.com/PyCQA/pydocstyle/pull/395 class AugFloat(float): ok = True From ee2e2231aa755fcfb23461a2c2c35b094b550ac2 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Fri, 13 Mar 2026 16:50:33 +0000 Subject: [PATCH 07/17] Fix for deprecated np.object --- tests/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/utils.py b/tests/utils.py index 5bd3119..78f075b 100644 --- a/tests/utils.py +++ b/tests/utils.py @@ -47,7 +47,7 @@ class AugArray(numpy.ndarray): if count > 1: if dtype in (DBR_STRING, DBR_CHAR): - npdtype = numpy.object + npdtype = object else: npdtype = numpy.float64 f = AugArray([len(val)], dtype=npdtype) From e151032d1966ce88b7d7341670b4c4573abf02d3 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Fri, 13 Mar 2026 16:52:13 +0000 Subject: [PATCH 08/17] Remove unused sphinx docs --- docs/_static/theme_overrides.css | 33 ------- docs/_templates/layout.html | 24 ------ docs/conf.py | 143 ------------------------------- docs/images/dls-favicon.ico | Bin 99678 -> 0 bytes docs/images/dls-logo.svg | 11 --- docs/index.rst | 9 -- 6 files changed, 220 deletions(-) delete mode 100644 docs/_static/theme_overrides.css delete mode 100644 docs/_templates/layout.html delete mode 100644 docs/conf.py delete mode 100644 docs/images/dls-favicon.ico delete mode 100644 docs/images/dls-logo.svg delete mode 100644 docs/index.rst diff --git a/docs/_static/theme_overrides.css b/docs/_static/theme_overrides.css deleted file mode 100644 index df732c7..0000000 --- a/docs/_static/theme_overrides.css +++ /dev/null @@ -1,33 +0,0 @@ -/* override table width restrictions */ -@media screen and (min-width: 639px) { - .wy-table-responsive table td { - /* !important prevents the common CSS stylesheets from - overriding this as on RTD they are loaded after this stylesheet */ - white-space: normal !important; - } -} - -/* override table padding */ -.rst-content table.docutils th, .rst-content table.docutils td { - padding: 4px 6px; -} - -/* allow us to stop margin after list so we can add to it */ -.no-margin-after-ul ul { - margin-bottom: 0 !important; -} - -/* Add two-column option */ -@media only screen and (min-width: 1000px), - only screen and (min-width: 500px) and (max-width: 768px){ - .columns { - padding-left: 5px; - padding-right: 5px; - float: left; - width: 50%; - } -} - -.endcolumns { - clear: both -} diff --git a/docs/_templates/layout.html b/docs/_templates/layout.html deleted file mode 100644 index 5fec68a..0000000 --- a/docs/_templates/layout.html +++ /dev/null @@ -1,24 +0,0 @@ - -{% extends "!layout.html" %} -{% block menu %} - - {{ super() }} - - - Index - - - {% if versions %} -

Versions

-
    - {%- for item in versions|reverse %} -
  • {{ item.name }}
    • - {%- endfor %} -
- {% endif %} -{% endblock %} diff --git a/docs/conf.py b/docs/conf.py deleted file mode 100644 index f67eb16..0000000 --- a/docs/conf.py +++ /dev/null @@ -1,143 +0,0 @@ -# Configuration file for the Sphinx documentation builder. -# -# This file only contains a selection of the most common options. For a full -# list see the documentation: -# https://www.sphinx-doc.org/en/master/usage/configuration.html - -# -- Path setup -------------------------------------------------------------- - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -import os -import sys - - -sys.path.insert(0, os.path.abspath(os.path.join(__file__, "..", ".."))) - -import burt # noqa - -# -- General configuration ------------------------------------------------ - -# General information about the project. -project = "burt" -copyright = "2019, Diamond Light Source" -author = "Ito Alcuaz" - -# The full version, including alpha/beta/rc tags. -release = burt.__version__ - -# The short X.Y version. -if "+" in release: - # Not on a tag - version = "master" -else: - version = release - -extensions = [ - # Use this for generating API docs - "sphinx.ext.autodoc", - # This can parse google style docstrings - "sphinx.ext.napoleon", - # For linking to external sphinx documentation - "sphinx.ext.intersphinx", - # Add links to source code in API docs - "sphinx.ext.viewcode", - # Adds the inheritance-diagram generation directive - "sphinx.ext.inheritance_diagram", - # Add multiple versions of documentation on CI - "sphinx_multiversion", -] - -# If true, Sphinx will warn about all references where the target cannot -# be found. -nitpicky = True - -# A list of (type, target) tuples (by default empty) that should be ignored when -# generating warnings in "nitpicky mode". Note that type should include the -# domain name if present. Example entries would be ('py:func', 'int') or -# ('envvar', 'LD_LIBRARY_PATH'). -nitpick_ignore = [("py:func", "int")] - -# Both the class’ and the __init__ method’s docstring are concatenated and -# inserted into the main body of the autoclass directive -autoclass_content = "both" - -# Order the members by the order they appear in the source code -autodoc_member_order = "bysource" - -# Don't inherit docstrings from baseclasses -autodoc_inherit_docstrings = False - -# Output graphviz directive produced images in a scalable format -graphviz_output_format = "svg" - -# The name of a reST role (builtin or Sphinx extension) to use as the default -# role, that is, for text marked up `like this` -default_role = "any" - -# Add any paths that contain templates here, relative to this directory. -templates_path = ["_templates"] - -# The suffix of source filenames. -source_suffix = ".rst" - -# The master toctree document. -master_doc = "index" - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -# These patterns also affect html_static_path and html_extra_path -exclude_patterns = ["_build"] - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = "sphinx" - -# This means you can link things like `str` and `asyncio` to the relevant -# docs in the python documentation. -intersphinx_mapping = dict(python=("https://docs.python.org/3/", None)) - -# A dictionary of graphviz graph attributes for inheritance diagrams. -inheritance_graph_attrs = dict(rankdir="TB") - -# Common links that should be available on every page -rst_epilog = """ -.. _Diamond Light Source: - http://www.diamond.ac.uk -""" - -# -- Options for HTML output ------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# -html_theme = "sphinx_rtd_theme" - -# Options for the sphinx rtd theme, use DLS blue -html_theme_options = dict(style_nav_header_background="rgb(7, 43, 93)") - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ["_static"] - -# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. -html_show_sphinx = False - -# If true, "(C) Copyright ..." is shown in the HTML footer. 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- - - - - - diff --git a/docs/index.rst b/docs/index.rst deleted file mode 100644 index 7b4c03a..0000000 --- a/docs/index.rst +++ /dev/null @@ -1,9 +0,0 @@ -Pyburt -====== - -Pyburt is a simple Python package used for saving and restoring -values of EPICS PVs. - -.. toctree:: - :maxdepth: 2 - :caption: Contents: From b54351c42b67b7d09943ce618ab8ee33bee869c5 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 10:58:42 +0000 Subject: [PATCH 09/17] Remove old unused files --- .gitattributes | 1 - .gitlab-ci.yml | 8 - Pipfile | 44 --- Pipfile.lock | 739 ------------------------------------------------- 4 files changed, 792 deletions(-) delete mode 100644 .gitattributes delete mode 100644 .gitlab-ci.yml delete mode 100644 Pipfile delete mode 100644 Pipfile.lock diff --git a/.gitattributes b/.gitattributes deleted file mode 100644 index 41a1393..0000000 --- a/.gitattributes +++ /dev/null @@ -1 +0,0 @@ -*/_version_git.py export-subst diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml deleted file mode 100644 index 85f01ba..0000000 --- a/.gitlab-ci.yml +++ /dev/null @@ -1,8 +0,0 @@ -include: - - project: 'controls/reports/ci_templates' - ref: master - file: 'python3/dls_py3_template.yml' - -variables: - SKIP_DOCS: 1 - diff --git a/Pipfile b/Pipfile deleted file mode 100644 index a7e0cba..0000000 --- a/Pipfile +++ /dev/null @@ -1,44 +0,0 @@ -[[source]] -name = "pypi" -url = "https://pypi.org/simple" -verify_ssl = true - -[dev-packages] -# Pinning black stops us having to allow pre-releases globally -black = "==19.10b0" - -# Pins to make lockfile usable on multiple Python versions and platforms -mypy = "*" -atomicwrites = "*" -typing-extensions = "*" -importlib-metadata = "*" - -# Switch to main repo after PR https://github.com/Holzhaus/sphinx-multiversion/pull/64 is merged -sphinx-multiversion = {editable = true,git = "https://github.com/dls-controls/sphinx-multiversion.git",ref = "only-arg"} - -# List wheel here to make sure we make the same version to make wheels on gitlab and github CI -wheel = "0.33.1" - -# Test and docs dependencies -mock = "*" -pytest-cov = "*" -pytest-mypy = "*" -pytest-flake8 = "*" -pytest-black = "*" -flake8-isort = "*" -isort = ">5.0" -sphinx-rtd-theme = "*" -epicscorelibs = "*" -epicsdbbuilder = "*" - -[packages] -# All other package requirements from setup.cfg -pyburt = {editable = true, path = "."} - -[scripts] -tests = "python -m pytest --cov=burt tests" -unit-tests = "python -m pytest --cov=burt tests/unit" -docs = "sphinx-build -E -b html docs build/html" -build = "python setup.py sdist bdist_wheel" -# Delete any files that git ignore hides from us -gitclean = "git clean -fdX" diff --git a/Pipfile.lock b/Pipfile.lock deleted file mode 100644 index fd1f733..0000000 --- a/Pipfile.lock +++ /dev/null @@ -1,739 +0,0 @@ -{ - "_meta": { - "hash": { - "sha256": "a201c38094af5303c9a7c00261b48446f141525125a4963194c491bc51abdef0" - }, - "pipfile-spec": 6, - "requires": {}, - "sources": [ - { - "name": "pypi", - "url": 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tests/resources/req/malformed_save_len_too_large.req | 2 +- tests/resources/req/normal.req | 2 +- tests/resources/req/types.req | 2 -- tests/resources/req/various_types.req | 1 - tests/resources/rgr/blank.rgr | 2 +- tests/resources/rgr/duplicate_rgr_headers.rgr | 2 +- tests/resources/rgr/inline_comments.rgr | 2 +- tests/resources/rgr/malformed_body.rgr | 2 +- tests/resources/rgr/malformed_body_misordered_checks.rgr | 2 +- tests/resources/rgr/malformed_header_missing_colons.rgr | 2 +- tests/resources/rgr/malformed_header_strange_entries.rgr | 2 +- tests/resources/rgr/malformed_header_typo.rgr | 2 +- tests/resources/rgr/malformed_header_typo_prefixes.rgr | 2 +- tests/resources/rgr/misordered_headers.rgr | 2 +- tests/resources/rgr/missing_bottom_rgr_header.rgr | 2 +- tests/resources/rgr/missing_top_rgr_header.rgr | 2 +- tests/resources/rgr/normal.rgr | 2 +- tests/resources/rgr/only_header.rgr | 2 +- tests/resources/rqg/blank.rqg | 2 +- tests/resources/rqg/inline_comments.rqg | 2 +- tests/resources/rqg/malformed_misordered_checks.rqg | 2 +- tests/resources/rqg/normal.rqg | 2 +- tests/resources/snap/arrays_and_scalars.snap | 2 +- tests/resources/snap/arrays_and_scalars_with_mods.snap | 2 +- tests/resources/snap/blank.snap | 2 +- tests/resources/snap/duplicate_burt_headers.snap | 2 +- tests/resources/snap/enum_with_spaces.snap | 2 +- tests/resources/snap/inline_comments.snap | 2 +- tests/resources/snap/ioc_restore_array.snap | 2 +- tests/resources/snap/ioc_restore_enum.snap | 2 +- tests/resources/snap/ioc_restore_scalar.snap | 2 +- tests/resources/snap/ioc_restore_string.snap | 2 +- tests/resources/snap/malformed_body.snap | 2 +- tests/resources/snap/malformed_footer_non_int_length.snap | 2 +- tests/resources/snap/malformed_footer_unknown_prefix.snap | 2 +- tests/resources/snap/malformed_header_burt_typo.snap | 2 +- tests/resources/snap/malformed_header_missing_colons.snap | 2 +- tests/resources/snap/malformed_header_strange_entries.snap | 2 +- tests/resources/snap/malformed_header_typo_prefixes.snap | 2 +- tests/resources/snap/misordered_burt_headers.snap | 2 +- tests/resources/snap/misordered_header_prefixes.snap | 2 +- tests/resources/snap/missing_bottom_burt_header.snap | 2 +- tests/resources/snap/missing_top_burt_header.snap | 2 +- tests/resources/snap/multiple_req_paths.snap | 2 +- tests/resources/snap/only_header.snap | 2 +- tests/resources/snap/scalars.snap | 2 +- 53 files changed, 50 insertions(+), 55 deletions(-) diff --git a/tests/resources/check/normal_2.check b/tests/resources/check/normal_2.check index 2fb046e..12af77f 100644 --- a/tests/resources/check/normal_2.check +++ b/tests/resources/check/normal_2.check @@ -10,5 +10,3 @@ SR01A-PC-Q1B-10:OFFSET1.VAL 6 % comment SR03A-PC-Q1B-01:OFFSET1.VAL 5 2 SR03A-PC-Q2B-02:OFFSET1.VAL 0 0 - - diff --git a/tests/resources/req/array.req b/tests/resources/req/array.req index 28ed38a..334f254 100644 --- a/tests/resources/req/array.req +++ b/tests/resources/req/array.req @@ -7,4 +7,4 @@ SR-CS-SOFT-01:CHAR_ARR SR-CS-SOFT-01:DOUBLE_ARR SR-CS-SOFT-01:FLOAT_ARR SR-CS-SOFT-01:LONG_ARR -SR-CS-SOFT-01:STRING_ARR \ No newline at end of file +SR-CS-SOFT-01:STRING_ARR diff --git a/tests/resources/req/blank.req b/tests/resources/req/blank.req index 6fc9551..4149f3f 100644 --- a/tests/resources/req/blank.req +++ b/tests/resources/req/blank.req @@ -1 +1 @@ -% This is a blank test file for the base case. \ No newline at end of file +% This is a blank test file for the base case. diff --git a/tests/resources/req/inline_comments.req b/tests/resources/req/inline_comments.req index 3e758eb..c7bc638 100644 --- a/tests/resources/req/inline_comments.req +++ b/tests/resources/req/inline_comments.req @@ -3,4 +3,4 @@ SR01C-DI-COL-01:GAP % This inline comment should be handled. % Another percent s %SR01C-DI-COL-02:CENTRE % This PV should be ignored due to percent sign in front. %SR01C-DI-COL-02:CENTRE % Comment line with whitespace. % Comment -SR01C-DI-COL-01:LEFT \ No newline at end of file +SR01C-DI-COL-01:LEFT diff --git a/tests/resources/req/malformed.req b/tests/resources/req/malformed.req index 17afe69..295bd4a 100644 --- a/tests/resources/req/malformed.req +++ b/tests/resources/req/malformed.req @@ -8,4 +8,4 @@ Lorem ipsum Lorem ipsum %% -%% TODO: this test .req file needs to be broken up into separate files to isolate the different cases \ No newline at end of file +%% TODO: this test .req file needs to be broken up into separate files to isolate the different cases diff --git a/tests/resources/req/malformed_save_len_neg_int.req b/tests/resources/req/malformed_save_len_neg_int.req index 680916b..20976be 100644 --- a/tests/resources/req/malformed_save_len_neg_int.req +++ b/tests/resources/req/malformed_save_len_neg_int.req @@ -1 +1 @@ -SR-DI-PICO-01:BUCKETS -1 \ No newline at end of file +SR-DI-PICO-01:BUCKETS -1 diff --git a/tests/resources/req/malformed_save_len_non_int.req b/tests/resources/req/malformed_save_len_non_int.req index f027a97..1fb7046 100644 --- a/tests/resources/req/malformed_save_len_non_int.req +++ b/tests/resources/req/malformed_save_len_non_int.req @@ -1 +1 @@ -SR-DI-PICO-01:BUCKETS x \ No newline at end of file +SR-DI-PICO-01:BUCKETS x diff --git a/tests/resources/req/malformed_save_len_too_large.req b/tests/resources/req/malformed_save_len_too_large.req index e480503..f85ddeb 100644 --- a/tests/resources/req/malformed_save_len_too_large.req +++ b/tests/resources/req/malformed_save_len_too_large.req @@ -1,2 +1,2 @@ % This PV only has 8 elements. -SR-CS-SOFT-01:DOUBLE_ARR 9 \ No newline at end of file +SR-CS-SOFT-01:DOUBLE_ARR 9 diff --git a/tests/resources/req/normal.req b/tests/resources/req/normal.req index b71b814..a379411 100644 --- a/tests/resources/req/normal.req +++ b/tests/resources/req/normal.req @@ -15,4 +15,4 @@ RON SR01C-DI-COL-01:POS1 RO SR01C-DI-COL-01:POS2 RO SR01C-DI-COL-02:POS1 RO SR01C-DI-COL-02:POS2 -SR-CS-RING-01:MODE \ No newline at end of file +SR-CS-RING-01:MODE diff --git a/tests/resources/req/types.req b/tests/resources/req/types.req index 0d91474..d400d07 100644 --- a/tests/resources/req/types.req +++ b/tests/resources/req/types.req @@ -33,5 +33,3 @@ LI-TI-EVG-01:LINAC-PRE % Array short LI-VA-VLVCC-01:SOFTWARE - - diff --git a/tests/resources/req/various_types.req b/tests/resources/req/various_types.req index cacce82..bb1ba4b 100644 --- a/tests/resources/req/various_types.req +++ b/tests/resources/req/various_types.req @@ -36,4 +36,3 @@ SR-CS-SOFT-01:CHAR % Array char SR-CS-SOFT-01:CHAR_ARR - diff --git a/tests/resources/rgr/blank.rgr b/tests/resources/rgr/blank.rgr index 6fc9551..4149f3f 100644 --- a/tests/resources/rgr/blank.rgr +++ b/tests/resources/rgr/blank.rgr @@ -1 +1 @@ -% This is a blank test file for the base case. \ No newline at end of file +% This is a blank test file for the base case. diff --git a/tests/resources/rgr/duplicate_rgr_headers.rgr b/tests/resources/rgr/duplicate_rgr_headers.rgr index d07a836..144c41e 100644 --- a/tests/resources/rgr/duplicate_rgr_headers.rgr +++ b/tests/resources/rgr/duplicate_rgr_headers.rgr @@ -3,4 +3,4 @@ --- Start Restore Group header --- End Restore Group header --- Start Restore Group header ---- End Restore Group header \ No newline at end of file +--- End Restore Group header diff --git a/tests/resources/rgr/inline_comments.rgr b/tests/resources/rgr/inline_comments.rgr index 3e51911..066721f 100644 --- a/tests/resources/rgr/inline_comments.rgr +++ b/tests/resources/rgr/inline_comments.rgr @@ -13,4 +13,4 @@ Rqg File: /home/ops/sample.rqg /home/ops/burt/backupFiles/SR-PC/SR-rtf26_190226_164119.snap /home/ops/burt/backupFiles/SR-DI/SR-rtf26_190226_164119.snap /home/ops/burt/backupFiles/SR01A-PC/SR-rtf26_190226_164119.snap -/home/ops/burt/backupFiles/SR02A-PC-DDBA/SR-rtf26_190226_164119.snap \ No newline at end of file +/home/ops/burt/backupFiles/SR02A-PC-DDBA/SR-rtf26_190226_164119.snap diff --git a/tests/resources/rgr/malformed_body.rgr b/tests/resources/rgr/malformed_body.rgr index 6b775b0..90cb469 100644 --- a/tests/resources/rgr/malformed_body.rgr +++ b/tests/resources/rgr/malformed_body.rgr @@ -4,4 +4,4 @@ Rqg File: /home/ops/sample.rqg --- End Restore Group header /some/path/oops.random /normal/path/here.check -/normal/path/here.snap \ No newline at end of file +/normal/path/here.snap diff --git a/tests/resources/rgr/malformed_body_misordered_checks.rgr b/tests/resources/rgr/malformed_body_misordered_checks.rgr index 73a7c22..15fc5ba 100644 --- a/tests/resources/rgr/malformed_body_misordered_checks.rgr +++ b/tests/resources/rgr/malformed_body_misordered_checks.rgr @@ -18,4 +18,4 @@ Rqg File: /home/ops/sample.rqg /home/ops/burt/checkFiles/fastchic.check % misordered check 2 /home/ops/burt/backupFiles/SR01A-PC/SR-rtf26_190226_164119.snap -/home/ops/burt/backupFiles/SR02A-PC-DDBA/SR-rtf26_190226_164119.snap \ No newline at end of file +/home/ops/burt/backupFiles/SR02A-PC-DDBA/SR-rtf26_190226_164119.snap diff --git a/tests/resources/rgr/malformed_header_missing_colons.rgr b/tests/resources/rgr/malformed_header_missing_colons.rgr index c1dda84..33ec3e4 100644 --- a/tests/resources/rgr/malformed_header_missing_colons.rgr +++ b/tests/resources/rgr/malformed_header_missing_colons.rgr @@ -2,4 +2,4 @@ Comments Hello World --- End Restore Group header /some/path.check -/some/path.snap \ No newline at end of file +/some/path.snap diff --git a/tests/resources/rgr/malformed_header_strange_entries.rgr b/tests/resources/rgr/malformed_header_strange_entries.rgr index 28865c5..741ff91 100644 --- a/tests/resources/rgr/malformed_header_strange_entries.rgr +++ b/tests/resources/rgr/malformed_header_strange_entries.rgr @@ -3,4 +3,4 @@ Comments: \n\t#'~:@L.:@}EEP_+_(_OPK&!"¬`¬+=-)(*&%$"££"!|\\|/>\M<.~#';l][\t\n Rqg File: /home/ops/sample.rqg --- End Restore Group header /some/path.check -/some/path.snap \ No newline at end of file +/some/path.snap diff --git a/tests/resources/rgr/malformed_header_typo.rgr b/tests/resources/rgr/malformed_header_typo.rgr index 56995fa..5ad0e38 100644 --- a/tests/resources/rgr/malformed_header_typo.rgr +++ b/tests/resources/rgr/malformed_header_typo.rgr @@ -2,4 +2,4 @@ Comments: Rqg File: /home/ops/sample.rqg --- Ends Restore Group header -/some/path \ No newline at end of file +/some/path diff --git a/tests/resources/rgr/malformed_header_typo_prefixes.rgr b/tests/resources/rgr/malformed_header_typo_prefixes.rgr index 2caaaec..1168c47 100644 --- a/tests/resources/rgr/malformed_header_typo_prefixes.rgr +++ b/tests/resources/rgr/malformed_header_typo_prefixes.rgr @@ -2,4 +2,4 @@ Coment: Rqg File: /home/ops/sample.rqg --- End Restore Group header -/some/path \ No newline at end of file +/some/path diff --git a/tests/resources/rgr/misordered_headers.rgr b/tests/resources/rgr/misordered_headers.rgr index bbeb9f6..dceb087 100644 --- a/tests/resources/rgr/misordered_headers.rgr +++ b/tests/resources/rgr/misordered_headers.rgr @@ -1,2 +1,2 @@ --- End Restore Group header ---- Start Restore Group header \ No newline at end of file +--- Start Restore Group header diff --git a/tests/resources/rgr/missing_bottom_rgr_header.rgr b/tests/resources/rgr/missing_bottom_rgr_header.rgr index ea373e3..85b84ce 100644 --- a/tests/resources/rgr/missing_bottom_rgr_header.rgr +++ b/tests/resources/rgr/missing_bottom_rgr_header.rgr @@ -1 +1 @@ ---- Start Restore Group header \ No newline at end of file +--- Start Restore Group header diff --git a/tests/resources/rgr/missing_top_rgr_header.rgr b/tests/resources/rgr/missing_top_rgr_header.rgr index da8485d..716e12a 100644 --- a/tests/resources/rgr/missing_top_rgr_header.rgr +++ b/tests/resources/rgr/missing_top_rgr_header.rgr @@ -1 +1 @@ ---- End Restore Group header \ No newline at end of file +--- End Restore Group header diff --git a/tests/resources/rgr/normal.rgr b/tests/resources/rgr/normal.rgr index 3737000..9da916c 100644 --- a/tests/resources/rgr/normal.rgr +++ b/tests/resources/rgr/normal.rgr @@ -14,4 +14,4 @@ Rqg File: /home/ops/sample.rqg /home/ops/burt/backupFiles/SR-PC/SR-rtf26_190226_164119.snap /home/ops/burt/backupFiles/SR-DI/SR-rtf26_190226_164119.snap /home/ops/burt/backupFiles/SR01A-PC/SR-rtf26_190226_164119.snap -/home/ops/burt/backupFiles/SR02A-PC-DDBA/SR-rtf26_190226_164119.snap \ No newline at end of file +/home/ops/burt/backupFiles/SR02A-PC-DDBA/SR-rtf26_190226_164119.snap diff --git a/tests/resources/rgr/only_header.rgr b/tests/resources/rgr/only_header.rgr index 54ff10c..9af2e09 100644 --- a/tests/resources/rgr/only_header.rgr +++ b/tests/resources/rgr/only_header.rgr @@ -1,2 +1,2 @@ --- Start Restore Group header ---- End Restore Group header \ No newline at end of file +--- End Restore Group header diff --git a/tests/resources/rqg/blank.rqg b/tests/resources/rqg/blank.rqg index 6fc9551..4149f3f 100644 --- a/tests/resources/rqg/blank.rqg +++ b/tests/resources/rqg/blank.rqg @@ -1 +1 @@ -% This is a blank test file for the base case. \ No newline at end of file +% This is a blank test file for the base case. diff --git a/tests/resources/rqg/inline_comments.rqg b/tests/resources/rqg/inline_comments.rqg index 92cd705..0ebe094 100644 --- a/tests/resources/rqg/inline_comments.rqg +++ b/tests/resources/rqg/inline_comments.rqg @@ -15,4 +15,4 @@ /home/ops/burt/requestFiles/BR02C-TI.req /home/ops/burt/requestFiles/BR03C-TI.req /home/ops/burt/requestFiles/BR-PC.req -/home/ops/burt/requestFiles/BR-MP.req \ No newline at end of file +/home/ops/burt/requestFiles/BR-MP.req diff --git a/tests/resources/rqg/malformed_misordered_checks.rqg b/tests/resources/rqg/malformed_misordered_checks.rqg index bd5004c..15efc75 100644 --- a/tests/resources/rqg/malformed_misordered_checks.rqg +++ b/tests/resources/rqg/malformed_misordered_checks.rqg @@ -18,4 +18,4 @@ /home/ops/burt/requestFiles/BR03C-TI.req /home/ops/burt/requestFiles/BR-PC.req -/home/ops/burt/requestFiles/BR-MP.req \ No newline at end of file +/home/ops/burt/requestFiles/BR-MP.req diff --git a/tests/resources/rqg/normal.rqg b/tests/resources/rqg/normal.rqg index d60251f..2924668 100644 --- a/tests/resources/rqg/normal.rqg +++ b/tests/resources/rqg/normal.rqg @@ -16,4 +16,4 @@ /home/ops/burt/requestFiles/BR02C-TI.req /home/ops/burt/requestFiles/BR03C-TI.req /home/ops/burt/requestFiles/BR-PC.req -/home/ops/burt/requestFiles/BR-MP.req \ No newline at end of file +/home/ops/burt/requestFiles/BR-MP.req diff --git a/tests/resources/snap/arrays_and_scalars.snap b/tests/resources/snap/arrays_and_scalars.snap index d9e025d..dd5457c 100644 --- a/tests/resources/snap/arrays_and_scalars.snap +++ b/tests/resources/snap/arrays_and_scalars.snap @@ -12,4 +12,4 @@ Req File: /home/ops/burt/requestFiles/SR-DI.req SR01C-DI-COL-01:POS1 3 3.259328000000000e+00 3.259328000000000e+00 3.259328000000000e+00 % Random Inline Comment SR01C-DI-COL-01:POS2 1 -3.276854000000000e+00 SR01C-DI-COL-02:POS1 2 -1.200000000000000e+01 -1.200000000000000e+01 -SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 \ No newline at end of file +SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 diff --git a/tests/resources/snap/arrays_and_scalars_with_mods.snap b/tests/resources/snap/arrays_and_scalars_with_mods.snap index f837e15..ebc30a1 100644 --- a/tests/resources/snap/arrays_and_scalars_with_mods.snap +++ b/tests/resources/snap/arrays_and_scalars_with_mods.snap @@ -12,4 +12,4 @@ Req File: /home/ops/burt/requestFiles/SR-DI.req RON SR01C-DI-COL-01:POS1 3 3.259328000000000e+00 3.259328000000000e+00 3.259328000000000e+00 % Random Inline Comment RO SR01C-DI-COL-01:POS2 1 -3.276854000000000e+00 WO SR01C-DI-COL-02:POS1 2 -1.200000000000000e+01 -1.200000000000000e+01 -SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 \ No newline at end of file +SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 diff --git a/tests/resources/snap/blank.snap b/tests/resources/snap/blank.snap index 6fc9551..4149f3f 100644 --- a/tests/resources/snap/blank.snap +++ b/tests/resources/snap/blank.snap @@ -1 +1 @@ -% This is a blank test file for the base case. \ No newline at end of file +% This is a blank test file for the base case. diff --git a/tests/resources/snap/duplicate_burt_headers.snap b/tests/resources/snap/duplicate_burt_headers.snap index 89cce33..1c2e20b 100644 --- a/tests/resources/snap/duplicate_burt_headers.snap +++ b/tests/resources/snap/duplicate_burt_headers.snap @@ -3,4 +3,4 @@ --- End BURT header --- Start BURT header --- End BURT header ---- End BURT header \ No newline at end of file +--- End BURT header diff --git a/tests/resources/snap/enum_with_spaces.snap b/tests/resources/snap/enum_with_spaces.snap index c6b60d9..0848b36 100644 --- a/tests/resources/snap/enum_with_spaces.snap +++ b/tests/resources/snap/enum_with_spaces.snap @@ -12,4 +12,4 @@ Req File: tests/resources/req/normal.req SR01C-DI-COL-01:ENUM 1 NIL SR01C-DI-COL-01:ENUM2 1 "lower voltage" SR01C-DI-COL-01:ENUM3 1 "no voltage" -SR01C-DI-COL-01:ENUM4 1 "lower voltage no voltage" \ No newline at end of file +SR01C-DI-COL-01:ENUM4 1 "lower voltage no voltage" diff --git a/tests/resources/snap/inline_comments.snap b/tests/resources/snap/inline_comments.snap index 283e115..a09516f 100644 --- a/tests/resources/snap/inline_comments.snap +++ b/tests/resources/snap/inline_comments.snap @@ -15,4 +15,4 @@ SR01C-DI-COL-02:POS1 1 -1.200000000000000e+01 % Inline comments % Duplicated per %%% %%% %SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 % This PV should be ignored due to percent in front. %SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 % Comment line with whitespace. -SR01C-DI-COL-03:POS3 1 666 \ No newline at end of file +SR01C-DI-COL-03:POS3 1 666 diff --git a/tests/resources/snap/ioc_restore_array.snap b/tests/resources/snap/ioc_restore_array.snap index b397ca2..6b260bd 100644 --- a/tests/resources/snap/ioc_restore_array.snap +++ b/tests/resources/snap/ioc_restore_array.snap @@ -9,4 +9,4 @@ Type: Absolute Directory /home/ops/burt/backupFiles Req File: /home/ops/burt/requestFiles/SR-DI.req --- End BURT header -SR-CS-SOFT-01:DOUBLE_ARR 3 3.259328000000000e+00 4 -1 \ No newline at end of file +SR-CS-SOFT-01:DOUBLE_ARR 3 3.259328000000000e+00 4 -1 diff --git a/tests/resources/snap/ioc_restore_enum.snap b/tests/resources/snap/ioc_restore_enum.snap index cfc1365..66e8186 100644 --- a/tests/resources/snap/ioc_restore_enum.snap +++ b/tests/resources/snap/ioc_restore_enum.snap @@ -9,4 +9,4 @@ Type: Absolute Directory /home/ops/burt/backupFiles Req File: /home/ops/burt/requestFiles/SR-DI.req --- End BURT header -SR-CS-SOFT-01:MBBI 1 Fault \ No newline at end of file +SR-CS-SOFT-01:MBBI 1 Fault diff --git a/tests/resources/snap/ioc_restore_scalar.snap b/tests/resources/snap/ioc_restore_scalar.snap index 15f8e00..a12d3cf 100644 --- a/tests/resources/snap/ioc_restore_scalar.snap +++ b/tests/resources/snap/ioc_restore_scalar.snap @@ -9,4 +9,4 @@ Type: Absolute Directory /home/ops/burt/backupFiles Req File: /home/ops/burt/requestFiles/SR-DI.req --- End BURT header -SR-CS-SOFT-01:LONGIN 1 2 \ No newline at end of file +SR-CS-SOFT-01:LONGIN 1 2 diff --git a/tests/resources/snap/ioc_restore_string.snap b/tests/resources/snap/ioc_restore_string.snap index d3571c8..92e92e3 100644 --- a/tests/resources/snap/ioc_restore_string.snap +++ b/tests/resources/snap/ioc_restore_string.snap @@ -9,4 +9,4 @@ Type: Absolute Directory /home/ops/burt/backupFiles Req File: /home/ops/burt/requestFiles/SR-DI.req --- End BURT header -SR-CS-SOFT-01:STRINGIN 1 DIAD \ No newline at end of file +SR-CS-SOFT-01:STRINGIN 1 DIAD diff --git a/tests/resources/snap/malformed_body.snap b/tests/resources/snap/malformed_body.snap index 0bfb17e..7fb5039 100644 --- a/tests/resources/snap/malformed_body.snap +++ b/tests/resources/snap/malformed_body.snap @@ -17,4 +17,4 @@ random SR01C-DI-COL-01:POS6 1 1 nonexistent_pvSRO1C-DI-COL-02:POS99 2 1 1 SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 % The PVs below are not malformed. -SR01C-DI-COL-03:POS3 3 666 111 222 \ No newline at end of file +SR01C-DI-COL-03:POS3 3 666 111 222 diff --git a/tests/resources/snap/malformed_footer_non_int_length.snap b/tests/resources/snap/malformed_footer_non_int_length.snap index ff33607..37300a5 100644 --- a/tests/resources/snap/malformed_footer_non_int_length.snap +++ b/tests/resources/snap/malformed_footer_non_int_length.snap @@ -12,4 +12,4 @@ Req File: /home/ops/burt/requestFiles/SR-DI.req SR01C-DI-COL-01:POS1 -1 3.259328000000000e+00 3.259328000000000e+00 3.259328000000000e+00 % Should be fine SR01C-DI-COL-01:POS2 6.66 -3.276854000000000e+00 % Should be floored SR01C-DI-COL-02:POS1 qwerty -1.200000000000000e+01 -1.200000000000000e+01 % Should throw exception -SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 \ No newline at end of file +SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 diff --git a/tests/resources/snap/malformed_footer_unknown_prefix.snap b/tests/resources/snap/malformed_footer_unknown_prefix.snap index 2e945f0..cefeb2f 100644 --- a/tests/resources/snap/malformed_footer_unknown_prefix.snap +++ b/tests/resources/snap/malformed_footer_unknown_prefix.snap @@ -12,4 +12,4 @@ Req File: /home/ops/burt/requestFiles/SR-DI.req ROX SR01C-DI-COL-01:POS1 3 3.259328000000000e+00 3.259328000000000e+00 3.259328000000000e+00 WOR SR01C-DI-COL-01:POS2 1 -3.276854000000000e+00 SR01C-DI-COL-02:POS1 2 -1.200000000000000e+01 -1.200000000000000e+01 -RON SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 \ No newline at end of file +RON SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 diff --git a/tests/resources/snap/malformed_header_burt_typo.snap b/tests/resources/snap/malformed_header_burt_typo.snap index 14afcb9..3413c1a 100644 --- a/tests/resources/snap/malformed_header_burt_typo.snap +++ b/tests/resources/snap/malformed_header_burt_typo.snap @@ -1,2 +1,2 @@ --- Start BURTs header ---- End BURTs header \ No newline at end of file +--- End BURTs header diff --git a/tests/resources/snap/malformed_header_missing_colons.snap b/tests/resources/snap/malformed_header_missing_colons.snap index 0abf905..992375e 100644 --- a/tests/resources/snap/malformed_header_missing_colons.snap +++ b/tests/resources/snap/malformed_header_missing_colons.snap @@ -10,4 +10,4 @@ Directory /home/ops/burt/backupFiles Req File: /home/ops/burt/requestFiles/SR-DI.req --- End BURT header SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 -SR01C-DI-COL-03:POS3 3 666 111 222 \ No newline at end of file +SR01C-DI-COL-03:POS3 3 666 111 222 diff --git a/tests/resources/snap/malformed_header_strange_entries.snap b/tests/resources/snap/malformed_header_strange_entries.snap index 5b4543c..b40e335 100644 --- a/tests/resources/snap/malformed_header_strange_entries.snap +++ b/tests/resources/snap/malformed_header_strange_entries.snap @@ -10,4 +10,4 @@ Directory /home/ops/burt/backupFiles Req File: /home/ops/burt/requestFiles/SR-DI.req --- End BURT header SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 -SR01C-DI-COL-03:POS3 3 666 111 222 \ No newline at end of file +SR01C-DI-COL-03:POS3 3 666 111 222 diff --git a/tests/resources/snap/malformed_header_typo_prefixes.snap b/tests/resources/snap/malformed_header_typo_prefixes.snap index bf3d740..a9983b5 100644 --- a/tests/resources/snap/malformed_header_typo_prefixes.snap +++ b/tests/resources/snap/malformed_header_typo_prefixes.snap @@ -10,4 +10,4 @@ Directory /home/ops/burt/backupFiles Req File: /home/ops/burt/requestFiles/SR-DI.req --- End BURT header SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 -SR01C-DI-COL-03:POS3 3 666 111 222 \ No newline at end of file +SR01C-DI-COL-03:POS3 3 666 111 222 diff --git a/tests/resources/snap/misordered_burt_headers.snap b/tests/resources/snap/misordered_burt_headers.snap index 027efd0..71d6c38 100644 --- a/tests/resources/snap/misordered_burt_headers.snap +++ b/tests/resources/snap/misordered_burt_headers.snap @@ -1,2 +1,2 @@ --- End BURT header ---- Start BURT header \ No newline at end of file +--- Start BURT header diff --git a/tests/resources/snap/misordered_header_prefixes.snap b/tests/resources/snap/misordered_header_prefixes.snap index aee96f5..2cf798a 100644 --- a/tests/resources/snap/misordered_header_prefixes.snap +++ b/tests/resources/snap/misordered_header_prefixes.snap @@ -12,4 +12,4 @@ Directory /home/ops/burt/backupFiles SR01C-DI-COL-01:POS1 1 3.259328000000000e+00 SR01C-DI-COL-01:POS2 1 -3.276854000000000e+00 SR01C-DI-COL-02:POS1 1 -1.200000000000000e+01 -SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 \ No newline at end of file +SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 diff --git a/tests/resources/snap/missing_bottom_burt_header.snap b/tests/resources/snap/missing_bottom_burt_header.snap index 6a26ed3..19fc7dd 100644 --- a/tests/resources/snap/missing_bottom_burt_header.snap +++ b/tests/resources/snap/missing_bottom_burt_header.snap @@ -1 +1 @@ ---- Start BURT header \ No newline at end of file +--- Start BURT header diff --git a/tests/resources/snap/missing_top_burt_header.snap b/tests/resources/snap/missing_top_burt_header.snap index 915b5ba..2341379 100644 --- a/tests/resources/snap/missing_top_burt_header.snap +++ b/tests/resources/snap/missing_top_burt_header.snap @@ -1 +1 @@ ---- End BURT header \ No newline at end of file +--- End BURT header diff --git a/tests/resources/snap/multiple_req_paths.snap b/tests/resources/snap/multiple_req_paths.snap index cfa9f80..d5bfb11 100644 --- a/tests/resources/snap/multiple_req_paths.snap +++ b/tests/resources/snap/multiple_req_paths.snap @@ -16,4 +16,4 @@ Req File: /home/ops/burt/requestFiles/SR-DI5.req SR01C-DI-COL-01:POS1 1 3.259328000000000e+00 SR01C-DI-COL-01:POS2 1 -3.276854000000000e+00 SR01C-DI-COL-02:POS1 1 -1.200000000000000e+01 -SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 \ No newline at end of file +SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 diff --git a/tests/resources/snap/only_header.snap b/tests/resources/snap/only_header.snap index 2b23978..a9db4aa 100644 --- a/tests/resources/snap/only_header.snap +++ b/tests/resources/snap/only_header.snap @@ -1,2 +1,2 @@ --- Start BURT header ---- End BURT header \ No newline at end of file +--- End BURT header diff --git a/tests/resources/snap/scalars.snap b/tests/resources/snap/scalars.snap index 9f50ee9..c5d1933 100644 --- a/tests/resources/snap/scalars.snap +++ b/tests/resources/snap/scalars.snap @@ -12,4 +12,4 @@ Req File: /home/ops/burt/requestFiles/SR-DI.req SR01C-DI-COL-01:POS1 1 3.259328000000000e+00 SR01C-DI-COL-01:POS2 1 -3.276854000000000e+00 SR01C-DI-COL-02:POS1 1 -1.200000000000000e+01 -SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 \ No newline at end of file +SR01C-DI-COL-02:POS2 1 1.200000000000000e+01 From 6c1a0f5f7745a4f155ca2b9c7f288f56e9804e37 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 11:38:34 +0000 Subject: [PATCH 11/17] Rename exceptions to errors and use handle nested exceptions better --- src/burt/__init__.py | 4 ++-- src/burt/checks.py | 6 +++--- src/burt/parsers/__init__.py | 4 ++-- src/burt/parsers/check.py | 10 +++++----- src/burt/parsers/parser.py | 8 ++++---- src/burt/parsers/req.py | 10 +++++----- src/burt/parsers/rgr.py | 6 +++--- src/burt/parsers/rqg.py | 6 +++--- src/burt/parsers/snap.py | 8 ++++---- src/burt/read.py | 8 ++++---- tests/unit/burt/test_check.py | 6 +++--- tests/unit/burt/test_restore.py | 6 +++--- tests/unit/parsers/test_check_parser.py | 22 +++++++++++----------- tests/unit/parsers/test_req_parser.py | 4 ++-- tests/unit/parsers/test_rgr_parser.py | 6 +++--- tests/unit/parsers/test_rqg_parser.py | 8 ++++---- tests/unit/parsers/test_snap_parser.py | 6 +++--- 17 files changed, 64 insertions(+), 64 deletions(-) diff --git a/src/burt/__init__.py b/src/burt/__init__.py index 5c1b5db..48b6219 100644 --- a/src/burt/__init__.py +++ b/src/burt/__init__.py @@ -1,7 +1,7 @@ """The top-level burt package.""" from burt._version import __version__ # noqa -from burt.checks import CheckFailedException, check +from burt.checks import CheckFailedError, check from burt.parsers.check import CheckParser from burt.parsers.req import ReqParser from burt.parsers.rgr import RgrParser @@ -16,7 +16,7 @@ "take_snapshot", "take_snapshot_group", "check", - "CheckFailedException", + "CheckFailedError", "ReqParser", "SnapParser", "RgrParser", diff --git a/src/burt/checks.py b/src/burt/checks.py index 8a486e2..069f2f0 100644 --- a/src/burt/checks.py +++ b/src/burt/checks.py @@ -14,7 +14,7 @@ from burt.utils.file import is_check_file -class CheckFailedException(Exception): +class CheckFailedError(Exception): """Raise when a check unexpectedly fails. Encapsulate failed check info.""" def __init__(self, check_pv, msg=""): @@ -57,10 +57,10 @@ def check(check_file: str) -> None: for pv, ca_reading in zip(pvs, ca_readings): if not ca_reading.ok: logging.critical(f"Check {check_file} caget failure on {pv.name}") - raise CheckFailedException(pv, "Caget failure.") + raise CheckFailedError(pv, "Caget failure.") elif abs(ca_reading - pv.target) > pv.tolerance: - e = CheckFailedException(pv) + e = CheckFailedError(pv) logging.debug(e) logging.critical(f"Check {check_file} failed on {pv.name}") diff --git a/src/burt/parsers/__init__.py b/src/burt/parsers/__init__.py index 542acb9..57329d0 100644 --- a/src/burt/parsers/__init__.py +++ b/src/burt/parsers/__init__.py @@ -1,6 +1,6 @@ """Parsers package.""" -from burt.parsers.parser import BurtParser, ParserException +from burt.parsers.parser import BurtParser, ParserError from burt.parsers.req import ReqParser from burt.parsers.rgr import RgrParser from burt.parsers.rqg import RqgParser @@ -8,7 +8,7 @@ __all__ = [ "BurtParser", - "ParserException", + "ParserError", "ReqParser", "RgrParser", "RqgParser", diff --git a/src/burt/parsers/check.py b/src/burt/parsers/check.py index 8ae48e9..991787c 100644 --- a/src/burt/parsers/check.py +++ b/src/burt/parsers/check.py @@ -2,7 +2,7 @@ from collections import namedtuple -from burt.parsers import BurtParser, ParserException +from burt.parsers import BurtParser, ParserError class CheckParser(BurtParser): @@ -67,9 +67,7 @@ def read_body_line(self, line) -> "CHECK_PV": pv_snapshot = [segment.strip() for segment in line.split()] if len(pv_snapshot) < 2 or len(pv_snapshot) > 3: - raise ParserException( - "Malformed .check body: Unexpected number of elements." - ) + raise ParserError("Malformed .check body: Unexpected number of elements.") is_tolerance_specified = len(pv_snapshot) == 3 @@ -81,6 +79,8 @@ def read_body_line(self, line) -> "CHECK_PV": target = float(target) tolerance = float(tolerance) except ValueError: - raise ParserException("Malformed .check file: values must be numbers.") + raise ParserError( + "Malformed .check file: values must be numbers." + ) from ValueError return self.CHECK_PV(pv_name, target, tolerance) diff --git a/src/burt/parsers/parser.py b/src/burt/parsers/parser.py index 8088228..8a693fd 100644 --- a/src/burt/parsers/parser.py +++ b/src/burt/parsers/parser.py @@ -113,7 +113,7 @@ def parse_header(self, header_lines) -> dict[str, list[str]]: key, value = (part.strip() for part in line.split(None, 1)) if key not in self.get_header().prefixes: - raise ParserException(f"Unexpected Burt header prefix {key}.") + raise ParserError(f"Unexpected Burt header prefix {key}.") else: # Duplicated prefix case. Use a list to keep track of duplicated values. if key in prefix_to_val: @@ -174,7 +174,7 @@ def _extract_header_and_body(self, file_contents) -> tuple[list[str], list[str]] if self.get_header().start_label not in file_contents and ( self.get_header().end_label in file_contents ): - raise ParserException("Malformed BURT header.") + raise ParserError("Malformed BURT header.") try: header, body = [ @@ -182,7 +182,7 @@ def _extract_header_and_body(self, file_contents) -> tuple[list[str], list[str]] for part in file_contents.split(self.get_header().end_label) ] except ValueError: - raise ParserException("Duplicated BURT headers.") + raise ParserError("Duplicated BURT headers.") from ValueError header_lines = header.splitlines()[1:] body_lines = body.splitlines() @@ -223,7 +223,7 @@ def _clean_line(line) -> str: return cleaned_line.strip() -class ParserException(Exception): +class ParserError(Exception): """Raise when the parsers run into unexpected malformed formats.""" pass diff --git a/src/burt/parsers/req.py b/src/burt/parsers/req.py index c3e1326..bba1524 100644 --- a/src/burt/parsers/req.py +++ b/src/burt/parsers/req.py @@ -3,7 +3,7 @@ from collections import namedtuple from burt import consts -from burt.parsers import BurtParser, ParserException +from burt.parsers import BurtParser, ParserError class ReqParser(BurtParser): @@ -48,7 +48,7 @@ def read_body_line(self, line) -> "REQ_PV": pv_entry = [segment.strip() for segment in line.split()] if len(pv_entry) > 3: - raise ParserException("Malformed .req file: Too many elements in line.") + raise ParserError("Malformed .req file: Too many elements in line.") pv_name, save_len_index, modifier = ReqParser._extract_elements(pv_entry) @@ -111,13 +111,13 @@ def _extract_save_len(pv_entry, save_len_index): try: save_len = int(pv_entry[save_len_index]) except ValueError: - raise ParserException( + raise ParserError( "Malformed .req file: save length (third tuple element)" "must be an integer" - ) + ) from ValueError if save_len and save_len <= 0: - raise ParserException( + raise ParserError( "Malformed .req file: save length (third tuple element) must" "be a positive integer" ) diff --git a/src/burt/parsers/rgr.py b/src/burt/parsers/rgr.py index 30de88c..7067cb5 100644 --- a/src/burt/parsers/rgr.py +++ b/src/burt/parsers/rgr.py @@ -1,6 +1,6 @@ """Parser class which reads the information from a .rgr BURT file.""" -from burt.parsers import BurtParser, ParserException +from burt.parsers import BurtParser, ParserError from burt.parsers.snap import SnapParser from burt.utils.file import is_check_file, is_snap_file @@ -64,12 +64,12 @@ def read_body_line(self, line) -> str: """ if not is_snap_file(line) and not is_check_file(line): - raise ParserException( + raise ParserError( "Malformed .rgr file: invalid .snap or .check file specified." ) if self._is_snap_section and is_check_file(line): - raise ParserException( + raise ParserError( "Malformed .rgr file: .check files must be ordered before .snap files." ) diff --git a/src/burt/parsers/rqg.py b/src/burt/parsers/rqg.py index 0b0f5a6..203abb6 100644 --- a/src/burt/parsers/rqg.py +++ b/src/burt/parsers/rqg.py @@ -2,7 +2,7 @@ from burt.utils.file import is_check_file, is_req_file -from . import BurtParser, ParserException +from . import BurtParser, ParserError class RqgParser(BurtParser): @@ -45,12 +45,12 @@ def read_body_line(self, line) -> str: """ if not is_req_file(line) and not is_check_file(line): - raise ParserException( + raise ParserError( "Malformed .rqg file: invalid .req or .check file specified." ) if self._is_req_section and is_check_file(line): - raise ParserException( + raise ParserError( "Malformed .rqg file: .check files must be ordered before .req files." ) diff --git a/src/burt/parsers/snap.py b/src/burt/parsers/snap.py index b45ca2f..384e58d 100644 --- a/src/burt/parsers/snap.py +++ b/src/burt/parsers/snap.py @@ -4,7 +4,7 @@ from collections import namedtuple from burt import consts -from burt.parsers import BurtParser, ParserException +from burt.parsers import BurtParser, ParserError class SnapParser(BurtParser): @@ -95,7 +95,7 @@ def read_body_line(self, line) -> "SNAP_PV": ] if len(pv_snapshot) < 3: - raise ParserException( + raise ParserError( f"Malformed .snap body {pv_snapshot}: Too few elements for a PV." ) @@ -117,8 +117,8 @@ def read_body_line(self, line) -> "SNAP_PV": try: dtype_len_int = int(dtype_len) except ValueError: - raise ParserException( + raise ParserError( f"Malformed .snap file: data type length {dtype_len} is a non integer." - ) + ) from ValueError return self.SNAP_PV(pv_name, dtype_len_int, vals, modifier) diff --git a/src/burt/read.py b/src/burt/read.py index 74646d9..257832e 100644 --- a/src/burt/read.py +++ b/src/burt/read.py @@ -42,7 +42,7 @@ SNAP_PRECISION_SHORT_PYFORMAT = "{:.6e}" -class InvalidReadingException(Exception): +class InvalidReadingError(Exception): """Exception used to denote an incorrect CA reading.""" @@ -316,7 +316,7 @@ def _gen_snap_footer(ca_readings, pv_entries, compat=False): length, ca_reading_str, pv_entry ) snap_entries.append(formatted_snapshot_entry) - except InvalidReadingException as e: + except InvalidReadingError as e: logging.warning(f"Problem getting {pv_entry.name}: {e}") failed_pvs.append(pv_entry.name) @@ -346,9 +346,9 @@ def _ca_val_to_snap_entry( # if present will be stored in the reading itself. try: if not ca_reading.ok: - raise InvalidReadingException(f"Caget failure: {ca_reading.errorcode}.") + raise InvalidReadingError(f"Caget failure: {ca_reading.errorcode}.") except AttributeError as e: - raise InvalidReadingException(f"Malformed cothread object: {e}.") + raise InvalidReadingError(f"Malformed cothread object: {e}.") from e # If a save length is specified in the .req file, this is used to shorten the # cothread array length to the desired value. diff --git a/tests/unit/burt/test_check.py b/tests/unit/burt/test_check.py index 96b247f..48399cf 100644 --- a/tests/unit/burt/test_check.py +++ b/tests/unit/burt/test_check.py @@ -37,12 +37,12 @@ def test_fail_check(mock_caget): """Run the check against failure cases.""" # Zero tolerance for val in (9, 0, 11, 9.99, 10.01, -10): - with pytest.raises(burt.CheckFailedException): + with pytest.raises(burt.CheckFailedError): mock_caget.return_value = [aug_val(val)] burt.check(paths.NORMAL_CHECK_1) # 1E-6 tolerance for val in (1, -1, 10, 1e-5, -1e-5): - with pytest.raises(burt.CheckFailedException): + with pytest.raises(burt.CheckFailedError): mock_caget.return_value = [aug_val(val)] burt.check(paths.NORMAL_CHECK_3) @@ -51,5 +51,5 @@ def test_fail_check(mock_caget): def test_check_fails_if_ok_False(mock_caget): """Run the check and simulate caget returning .ok as False.""" mock_caget.return_value = [aug_val(1, ok=False)] - with pytest.raises(burt.CheckFailedException): + with pytest.raises(burt.CheckFailedError): burt.check(paths.NORMAL_CHECK_1) diff --git a/tests/unit/burt/test_restore.py b/tests/unit/burt/test_restore.py index aba9f47..44d7f9b 100644 --- a/tests/unit/burt/test_restore.py +++ b/tests/unit/burt/test_restore.py @@ -17,7 +17,7 @@ ) import burt -from burt.parsers import ParserException, SnapParser +from burt.parsers import ParserError, SnapParser from burt.write import _snap_entry_to_ca_type from tests import paths @@ -133,7 +133,7 @@ def test_restore_write_fail(mock_connect, mock_caput): ) def test_restore_bad_snap(mock_connect, mock_caput, snapfile): """Run BURT restore against some bad .snap files.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): burt.restore(snapfile) @@ -186,7 +186,7 @@ def test_restore_returns_pv_names_if_caput_fails(mock_connect, mock_caput): def test_blank_restore(): """Run burt restore against a blank .snap file.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): burt.restore(paths.BLANK_SNAP) diff --git a/tests/unit/parsers/test_check_parser.py b/tests/unit/parsers/test_check_parser.py index 0d252cc..67b6f5b 100644 --- a/tests/unit/parsers/test_check_parser.py +++ b/tests/unit/parsers/test_check_parser.py @@ -3,7 +3,7 @@ import pytest from burt import CheckParser as cp -from burt.parsers import ParserException +from burt.parsers import ParserError from tests import paths @@ -12,51 +12,51 @@ def test_base_case(): check_parser = cp(paths.BLANK_REQ) assert paths.BLANK_REQ == check_parser.path - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser.parse() def test_multiline_comments(): """Run the parser against a case with multi line comments in the header.""" check_parser = cp(paths.MULTI_LINE_COMMENT_CHECK) - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser.parse() def test_malformed_files(): """Run the parser against the malformed .check files.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.BAD_PREFIX_CHECK) check_parser.parse() - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.BAD_VALUES_CHECK) check_parser.parse() - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.EXCESS_VALUES_CHECK) check_parser.parse() - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.EXTRA_PREFIX_CHECK) check_parser.parse() - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.MISSING_TARGET_CHECK) check_parser.parse() def test_non_floats(): """Run the parser against cases with non parseable numbers.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.NORMAL_CHECK_1) check_parser.read_body_line("SR-DI-DCCT-01:SIGNAL a") - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.NORMAL_CHECK_1) check_parser.read_body_line("SR-DI-DCCT-01:SIGNAL blabla dummy") - with pytest.raises(ParserException): + with pytest.raises(ParserError): check_parser = cp(paths.NORMAL_CHECK_1) check_parser.read_body_line("SR-DI-DCCT-01:SIGNAL blabla dummy dummy2") diff --git a/tests/unit/parsers/test_req_parser.py b/tests/unit/parsers/test_req_parser.py index 67fda41..49c418f 100644 --- a/tests/unit/parsers/test_req_parser.py +++ b/tests/unit/parsers/test_req_parser.py @@ -3,7 +3,7 @@ import pytest from burt import ReqParser as rp -from burt.parsers import ParserException +from burt.parsers import ParserError from tests import paths @@ -42,7 +42,7 @@ def test_inline_comments(): ) def test_malformed_files(filename): """Run the parser against the malformed .req files.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): req_parser = rp(filename) req_parser.parse() diff --git a/tests/unit/parsers/test_rgr_parser.py b/tests/unit/parsers/test_rgr_parser.py index 45bd02f..92fbc41 100644 --- a/tests/unit/parsers/test_rgr_parser.py +++ b/tests/unit/parsers/test_rgr_parser.py @@ -4,7 +4,7 @@ import burt from burt import RgrParser as rp -from burt.parsers import ParserException +from burt.parsers import ParserError from tests import paths @@ -13,7 +13,7 @@ def test_base_case(): rgr_parser = burt.RgrParser(paths.BLANK_RGR) assert paths.BLANK_RGR == rgr_parser.path - with pytest.raises(ParserException): + with pytest.raises(ParserError): rgr_parser.parse() @@ -62,7 +62,7 @@ def test_inline_comments(): ) def test_malformed_files(filename): """Run the .rgr parser against the malformed .snap files.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): rgr_parser = rp(filename) rgr_parser.parse() diff --git a/tests/unit/parsers/test_rqg_parser.py b/tests/unit/parsers/test_rqg_parser.py index a5d3b02..56c9cfd 100644 --- a/tests/unit/parsers/test_rqg_parser.py +++ b/tests/unit/parsers/test_rqg_parser.py @@ -4,7 +4,7 @@ import burt from burt import RqgParser as rp -from burt.parsers import ParserException +from burt.parsers import ParserError from tests import paths @@ -13,7 +13,7 @@ def test_base_case(): rgr_parser = burt.RgrParser(paths.BLANK_RQG) assert paths.BLANK_RQG == rgr_parser.path - with pytest.raises(ParserException): + with pytest.raises(ParserError): rgr_parser.parse() @@ -44,11 +44,11 @@ def test_inline_comments(): def test_malformed_files(): """Run the .rqg parser against the malformed .rqg files.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): rqg_parser = burt.RqgParser(paths.MALFORMED_RQG) rqg_parser.parse() - with pytest.raises(ParserException): + with pytest.raises(ParserError): rqg_parser = burt.RqgParser(paths.MALFORMED_MISORDERED_CHECKS_RQG) rqg_parser.parse() diff --git a/tests/unit/parsers/test_snap_parser.py b/tests/unit/parsers/test_snap_parser.py index 3678099..d1d1872 100644 --- a/tests/unit/parsers/test_snap_parser.py +++ b/tests/unit/parsers/test_snap_parser.py @@ -4,7 +4,7 @@ import burt from burt import SnapParser as sp -from burt.parsers import ParserException +from burt.parsers import ParserError from tests import paths @@ -13,7 +13,7 @@ def test_base_case(): snap_parser = burt.SnapParser(paths.BLANK_SNAP) assert paths.BLANK_SNAP == snap_parser.path - with pytest.raises(ParserException): + with pytest.raises(ParserError): snap_parser.parse() @@ -64,7 +64,7 @@ def test_inline_comments(): ) def test_malformed_snap_files(invalid_snap_file): """Run the .snap parser against the malformed .snap files.""" - with pytest.raises(ParserException): + with pytest.raises(ParserError): snap_parser = sp(invalid_snap_file) snap_parser.parse() From 8d57392719f56a9be35cdbdebc8fe68eedf3f576 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 11:43:04 +0000 Subject: [PATCH 12/17] Add strict=False to zip calls It is good practice to specify this. Sometimes we have a channel access return value for each PV, sometime we have a single return value for all PVs. So we need strict=False --- src/burt/checks.py | 2 +- src/burt/read.py | 2 +- src/burt/write.py | 4 ++-- tests/ioc_manager.py | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/src/burt/checks.py b/src/burt/checks.py index 069f2f0..c9e875a 100644 --- a/src/burt/checks.py +++ b/src/burt/checks.py @@ -54,7 +54,7 @@ def check(check_file: str) -> None: ca_readings = caget([pv.name for pv in pvs], throw=False) - for pv, ca_reading in zip(pvs, ca_readings): + for pv, ca_reading in zip(pvs, ca_readings, strict=False): if not ca_reading.ok: logging.critical(f"Check {check_file} caget failure on {pv.name}") raise CheckFailedError(pv, "Caget failure.") diff --git a/src/burt/read.py b/src/burt/read.py index 257832e..c316480 100644 --- a/src/burt/read.py +++ b/src/burt/read.py @@ -302,7 +302,7 @@ def _gen_snap_footer(ca_readings, pv_entries, compat=False): snap_entries = [] failed_pvs = [] - for ca_reading, pv_entry in zip(ca_readings, pv_entries): + for ca_reading, pv_entry in zip(ca_readings, pv_entries, strict=False): if ca_reading.element_count > 1 and len(ca_reading) == 0: logging.warning(f"Uninitialised array PV {pv_entry.name}.") logging.warning( diff --git a/src/burt/write.py b/src/burt/write.py index 9ff4524..4710c00 100644 --- a/src/burt/write.py +++ b/src/burt/write.py @@ -82,7 +82,7 @@ def restore(snap_file: str) -> list[str]: pvs_to_restore = OrderedDict() - for pv_entry, ca_info in zip(pvs, ca_infos): + for pv_entry, ca_info in zip(pvs, ca_infos, strict=False): if _is_write_instr(pv_entry): if not ca_info.ok: logging.warning(f"PV invalid, skipping: {ca_info}") @@ -95,7 +95,7 @@ def restore(snap_file: str) -> list[str]: failed_pvs = [] return_values = caput(pvs_to_restore.keys(), pvs_to_restore.values(), throw=False) - for pv, return_value in zip(pvs_to_restore.keys(), return_values): + for pv, return_value in zip(pvs_to_restore.keys(), return_values, strict=False): if not return_value.ok: failed_pvs.append(pv) diff --git a/tests/ioc_manager.py b/tests/ioc_manager.py index e297dd1..7711be6 100644 --- a/tests/ioc_manager.py +++ b/tests/ioc_manager.py @@ -224,7 +224,7 @@ def build_mbbx_fields(states): # Create the correct number of keyword arguments to mbbi/mbbo: # ZRST=states[0], ZRVL=0, etc. - st_dict = {nn + "ST": s for nn, s in zip(number_names, states)} + st_dict = {nn + "ST": s for nn, s in zip(number_names, states, strict=False)} vl_dict = {nn + "VL": i for i, nn in enumerate(number_names)} # All calls use VAL=0, PINI='YES' From 5e2dccd63656bb0315cd91a9b909f9280e623d69 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 11:49:09 +0000 Subject: [PATCH 13/17] Ignore linting suggestion --- tests/integration/burt/test_snapshot.py | 2 +- tests/unit/burt/test_snapshot.py | 2 +- tests/unit/parsers/test_check_parser.py | 2 +- tests/unit/parsers/test_req_parser.py | 2 +- tests/unit/parsers/test_rgr_parser.py | 2 +- tests/unit/parsers/test_rqg_parser.py | 2 +- tests/unit/parsers/test_snap_parser.py | 2 +- 7 files changed, 7 insertions(+), 7 deletions(-) diff --git a/tests/integration/burt/test_snapshot.py b/tests/integration/burt/test_snapshot.py index 731c74f..5817c4f 100644 --- a/tests/integration/burt/test_snapshot.py +++ b/tests/integration/burt/test_snapshot.py @@ -7,7 +7,7 @@ import burt import tests.integration.softioc as ioc -from burt import SnapParser as sp +from burt import SnapParser as sp # noqa: N813 from tests import paths as core_paths from tests.integration import paths diff --git a/tests/unit/burt/test_snapshot.py b/tests/unit/burt/test_snapshot.py index 8d7af49..8f054ed 100644 --- a/tests/unit/burt/test_snapshot.py +++ b/tests/unit/burt/test_snapshot.py @@ -15,7 +15,7 @@ ) import burt -from burt import SnapParser as sp +from burt import SnapParser as sp # noqa: N813 from burt.read import _flatten_ca_array, _format_ca_reading from tests import paths from tests.utils import aug_val diff --git a/tests/unit/parsers/test_check_parser.py b/tests/unit/parsers/test_check_parser.py index 67b6f5b..7e35db2 100644 --- a/tests/unit/parsers/test_check_parser.py +++ b/tests/unit/parsers/test_check_parser.py @@ -2,7 +2,7 @@ import pytest -from burt import CheckParser as cp +from burt import CheckParser as cp # noqa: N813 from burt.parsers import ParserError from tests import paths diff --git a/tests/unit/parsers/test_req_parser.py b/tests/unit/parsers/test_req_parser.py index 49c418f..09208f7 100644 --- a/tests/unit/parsers/test_req_parser.py +++ b/tests/unit/parsers/test_req_parser.py @@ -2,7 +2,7 @@ import pytest -from burt import ReqParser as rp +from burt import ReqParser as rp # noqa: N813 from burt.parsers import ParserError from tests import paths diff --git a/tests/unit/parsers/test_rgr_parser.py b/tests/unit/parsers/test_rgr_parser.py index 92fbc41..6f8752f 100644 --- a/tests/unit/parsers/test_rgr_parser.py +++ b/tests/unit/parsers/test_rgr_parser.py @@ -3,7 +3,7 @@ import pytest import burt -from burt import RgrParser as rp +from burt import RgrParser as rp # noqa: N813 from burt.parsers import ParserError from tests import paths diff --git a/tests/unit/parsers/test_rqg_parser.py b/tests/unit/parsers/test_rqg_parser.py index 56c9cfd..af79e2a 100644 --- a/tests/unit/parsers/test_rqg_parser.py +++ b/tests/unit/parsers/test_rqg_parser.py @@ -3,7 +3,7 @@ import pytest import burt -from burt import RqgParser as rp +from burt import RqgParser as rp # noqa: N813 from burt.parsers import ParserError from tests import paths diff --git a/tests/unit/parsers/test_snap_parser.py b/tests/unit/parsers/test_snap_parser.py index d1d1872..2e2cd36 100644 --- a/tests/unit/parsers/test_snap_parser.py +++ b/tests/unit/parsers/test_snap_parser.py @@ -3,7 +3,7 @@ import pytest import burt -from burt import SnapParser as sp +from burt import SnapParser as sp # noqa: N813 from burt.parsers import ParserError from tests import paths From f2635b6e3e4e91fb6fde2f3f84242cd3547b3439 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 11:59:19 +0000 Subject: [PATCH 14/17] Minor linting fixes --- src/burt/write.py | 4 ++-- tests/integration/burt/test_snapshot.py | 8 ++++---- tests/unit/burt/test_check.py | 4 ++-- tests/unit/burt/test_restore.py | 5 +++-- tests/unit/burt/test_snapshot.py | 20 ++++++++++---------- 5 files changed, 21 insertions(+), 20 deletions(-) diff --git a/src/burt/write.py b/src/burt/write.py index 4710c00..3c949bb 100644 --- a/src/burt/write.py +++ b/src/burt/write.py @@ -21,7 +21,7 @@ import os import sys from collections import OrderedDict -from typing import Any, Union, cast +from typing import Any, cast import cothread from cothread.catools import ( @@ -42,7 +42,7 @@ from burt.parsers.snap import SnapParser from burt.utils.file import is_check_file, is_null_char, is_rgr_file, is_snap_file -CaValue = Union[str, int, float] +CaValue = str | int | float def restore(snap_file: str) -> list[str]: diff --git a/tests/integration/burt/test_snapshot.py b/tests/integration/burt/test_snapshot.py index 5817c4f..870ec32 100644 --- a/tests/integration/burt/test_snapshot.py +++ b/tests/integration/burt/test_snapshot.py @@ -68,8 +68,8 @@ def test_snapshot_partial_array(pyburt_tmpfile, compat): """ # Define the expected compatibility behaviour. - DOUBLE_NULL = DOUBLE_ZERO_STR if compat else NULL_STR - FLOAT_NULL = FLOAT_ZERO_STR if compat else NULL_STR + double_null = DOUBLE_ZERO_STR if compat else NULL_STR + float_null = FLOAT_ZERO_STR if compat else NULL_STR caput(ioc.LOCAL_PV_ARR_CHAR, [1, 2, 3]) caput(ioc.LOCAL_PV_ARR_DBL, [1.1, 2.2, 3.3]) @@ -87,10 +87,10 @@ def test_snapshot_partial_array(pyburt_tmpfile, compat): "1.100000000000000e+00", "2.200000000000000e+00", "3.300000000000000e+00", - ] + [DOUBLE_NULL] * 5 + ] + [double_null] * 5 assert double_array_entry.vals == double_expected float_array_entry = body[7] - float_expected = ["1.100000e+00", "2.200000e+00", "3.300000e+00"] + [FLOAT_NULL] * 5 + float_expected = ["1.100000e+00", "2.200000e+00", "3.300000e+00"] + [float_null] * 5 assert float_array_entry.vals == float_expected long_array_entry = body[8] long_expected = ["1", "2", "3"] + [NULL_STR] * 5 diff --git a/tests/unit/burt/test_check.py b/tests/unit/burt/test_check.py index 48399cf..248eb11 100644 --- a/tests/unit/burt/test_check.py +++ b/tests/unit/burt/test_check.py @@ -27,7 +27,7 @@ def test_normal_check(mock_caget): burt.check(paths.NORMAL_CHECK_1) # 1E-6 tolerance - for vai in (0, 1e-6, 1e-7, -1e-7): + for _ in (0, 1e-6, 1e-7, -1e-7): mock_caget.return_value = [aug_val(0)] burt.check(paths.NORMAL_CHECK_3) @@ -48,7 +48,7 @@ def test_fail_check(mock_caget): @mock.patch("burt.checks.caget") -def test_check_fails_if_ok_False(mock_caget): +def test_check_fails_if_ok_false(mock_caget): """Run the check and simulate caget returning .ok as False.""" mock_caget.return_value = [aug_val(1, ok=False)] with pytest.raises(burt.CheckFailedError): diff --git a/tests/unit/burt/test_restore.py b/tests/unit/burt/test_restore.py index 44d7f9b..c633e69 100644 --- a/tests/unit/burt/test_restore.py +++ b/tests/unit/burt/test_restore.py @@ -14,6 +14,7 @@ DBR_LONG, DBR_SHORT, DBR_STRING, + ca_nothing, ) import burt @@ -109,11 +110,11 @@ def test_restore_channel_types(mock_connect, mock_caput): @mock.patch("burt.write.connect") def test_restore_write_fail(mock_connect, mock_caput): """Run BURT restore against a write exception case.""" - mock_caput.side_effect = Exception + mock_caput.side_effect = ca_nothing # TODO: discuss if anything special needs to occur on write failure. # Probable solution is to not do anything. - with pytest.raises(Exception): + with pytest.raises(ca_nothing): burt.restore(paths.ARRAYS_AND_SCALARS_WITH_MODS_SNAP) diff --git a/tests/unit/burt/test_snapshot.py b/tests/unit/burt/test_snapshot.py index 8f054ed..04ddd71 100644 --- a/tests/unit/burt/test_snapshot.py +++ b/tests/unit/burt/test_snapshot.py @@ -555,21 +555,21 @@ def test_snapshot_group(mock_caget): """Runs a take snapshot group test of a .rqg file.""" # TODO: this is a broken test with incorrect behaviour. To be changed when # snapshot groups are implemented. - assert False + raise AssertionError -def _old_req_file_header_burtinter_code(snapshotString): +def _old_req_file_header_burtinter_code(snapshot_string): """Remnant in old burtinter code.""" # Old code start - if snapshotString[0:9] == "Req File:": - requestFileName = snapshotString.split(" ")[2].split("\n")[0] - fileNameParts = requestFileName.split("/") - if fileNameParts[1] == "mt": - fileNameParts[1] = "" - requestFileName = "/".join(fileNameParts[1:]) + if snapshot_string[0:9] == "Req File:": + request_file_name = snapshot_string.split(" ")[2].split("\n")[0] + file_name_parts = request_file_name.split("/") + if file_name_parts[1] == "mt": + file_name_parts[1] = "" + request_file_name = "/".join(file_name_parts[1:]) # Old code end else: pytest.fail( - f"Last prefix entry is unexpectedly not Req File: {snapshotString}", - snapshotString, + f"Last prefix entry is unexpectedly not Req File: {snapshot_string}", + snapshot_string, ) From 377a6061bb19b17632819fb1f94c179de69b28a5 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 14:15:36 +0000 Subject: [PATCH 15/17] Fix exception in test --- tests/unit/burt/test_restore.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/unit/burt/test_restore.py b/tests/unit/burt/test_restore.py index c633e69..b7191dc 100644 --- a/tests/unit/burt/test_restore.py +++ b/tests/unit/burt/test_restore.py @@ -110,7 +110,7 @@ def test_restore_channel_types(mock_connect, mock_caput): @mock.patch("burt.write.connect") def test_restore_write_fail(mock_connect, mock_caput): """Run BURT restore against a write exception case.""" - mock_caput.side_effect = ca_nothing + mock_caput.side_effect = ca_nothing("Test") # TODO: discuss if anything special needs to occur on write failure. # Probable solution is to not do anything. From f6d233999fe38338358765ffff63887db0cea0bf Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 14:15:53 +0000 Subject: [PATCH 16/17] Fix incorrect type hinting --- src/burt/config/logconfig.py | 2 +- src/burt/read.py | 8 ++++---- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/src/burt/config/logconfig.py b/src/burt/config/logconfig.py index 776b648..4d4c5cc 100644 --- a/src/burt/config/logconfig.py +++ b/src/burt/config/logconfig.py @@ -70,7 +70,7 @@ def get_logfile_handler(log_file_path: str): return handler -def setup_logging(default_level: int = logging.INFO, log_file_path: str = None): +def setup_logging(default_level: int = logging.INFO, log_file_path: str | None = None): """Set logging configuration. Call this only once from the application main() function or __main__ module! diff --git a/src/burt/read.py b/src/burt/read.py index c316480..5466a81 100644 --- a/src/burt/read.py +++ b/src/burt/read.py @@ -49,8 +49,8 @@ class InvalidReadingError(Exception): def take_snapshot( req_files: list[str], snap_file: str, - comments: str = None, - keywords: str = None, + comments: str | None = None, + keywords: str | None = None, compat: bool = False, ) -> list[str]: """Save the PVs and their state to the specified snap file, with metadata. @@ -110,8 +110,8 @@ def take_snapshot( def take_snapshot_group( rqg_file: str, rgr_file: str, - comments: str = None, - keywords: str = None, + comments: str | None = None, + keywords: str | None = None, check: bool = True, ) -> list[str]: """Perform a BURT snapshot for each request file in the .rqg file. From e4e8ca4bf244ea79c08ba1b922c43840fd155f45 Mon Sep 17 00:00:00 2001 From: Phil Smith Date: Mon, 16 Mar 2026 16:37:49 +0000 Subject: [PATCH 17/17] Change package name from pyburt to burt --- .copier-answers.yml | 2 +- Dockerfile | 2 +- README.md | 2 +- pyproject.toml | 6 +++--- src/burt/__main__.py | 2 +- 5 files changed, 7 insertions(+), 7 deletions(-) diff --git a/.copier-answers.yml b/.copier-answers.yml index d581d87..2ae7aa6 100644 --- a/.copier-answers.yml +++ b/.copier-answers.yml @@ -13,7 +13,7 @@ docker_debug: false docs_type: README git_platform: github.com github_org: DiamondLightSource -package_name: pyburt +package_name: burt pypi: false repo_name: pyburt type_checker: mypy diff --git a/Dockerfile b/Dockerfile index 5e0ccfc..5c73573 100644 --- a/Dockerfile +++ b/Dockerfile @@ -40,5 +40,5 @@ COPY --from=build /app/.venv /app/.venv ENV PATH=/app/.venv/bin:$PATH # change this entrypoint if it is not the same as the repo -ENTRYPOINT ["pyburt"] +ENTRYPOINT ["burt"] CMD ["--version"] diff --git a/README.md b/README.md index bd3fd91..499d7a9 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://www.apache.org/licenses/LICENSE-2.0) -# pyburt +# burt Python version of the BackUp and ResTore tool diff --git a/pyproject.toml b/pyproject.toml index 3e28228..a945feb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -37,7 +37,7 @@ dev = [ ] [project.scripts] -pyburt = "burt.__main__:main" +burt = "burt.__main__:main" burt-read = "burt.read:main" burt-write = "burt.write:main" @@ -66,7 +66,7 @@ testpaths = "docs src tests" [tool.coverage.run] patch = ["subprocess"] -data_file = "/tmp/pyburt.coverage" +data_file = "/tmp/burt.coverage" [tool.coverage.paths] # Tests are run from installed location, map back to the src directory @@ -111,7 +111,7 @@ description = "Run tests with coverage" commands = [ [ "pytest", - "--cov=pyburt", + "--cov=burt", "--cov-report", "term", "--cov-report", diff --git a/src/burt/__main__.py b/src/burt/__main__.py index 78c0c85..2e0aa9a 100644 --- a/src/burt/__main__.py +++ b/src/burt/__main__.py @@ -1,4 +1,4 @@ -"""Interface for ``python -m pyburt``.""" +"""Interface for ``python -m burt``.""" from argparse import ArgumentParser from collections.abc import Sequence