From 988fdb420ebad7bcb61092a1077d6fa8d8e73ff4 Mon Sep 17 00:00:00 2001
From: frederick <frederick.allars@diamond.ac.uk>
Date: Fri, 2 Oct 2026 11:53:58 +0100
Subject: [PATCH 1/2] updating archive strategy for ptyrex workflow, so that
 artifacts are saved as jpeg instead of tgz

---
 e02/templates/ptyrex_basic.yaml | 8 +++++++-
 1 file changed, 7 insertions(+), 1 deletion(-)

diff --git a/e02/templates/ptyrex_basic.yaml b/e02/templates/ptyrex_basic.yaml
index 9ca03ac..d0d63bb 100644
--- a/e02/templates/ptyrex_basic.yaml
+++ b/e02/templates/ptyrex_basic.yaml
@@ -130,14 +130,20 @@ spec:
       artifacts:
       - name: ptyrex-object-modulus
         path: /tmp/object_modulus.jpeg
+        archive:
+          none: {}
       - name: ptyrex-object-phase
         path: /tmp/object_phase.jpeg
+        archive:
+          none: {}
       - name: ptyrex-probe-modulus
         path: /tmp/probe_modulus.jpeg
+        archive:
+          none: {}
       - name: ptyrex-probe-phase
         path: /tmp/probe_phase.jpeg
         archive:
-          none: { }
+          none: {}
     script:
       image: gitlab.diamond.ac.uk:5050/scisoft/ptychography/dimtools/mib2x
       imagePullPolicy: Always

From 351a32f8aeccf6c1fda81e0530b3ef8b4a872eb8 Mon Sep 17 00:00:00 2001
From: frederick <frederick.allars@diamond.ac.uk>
Date: Fri, 2 Oct 2026 11:59:36 +0100
Subject: [PATCH 2/2] updating print statements

---
 e02/templates/ptyrex_basic.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/e02/templates/ptyrex_basic.yaml b/e02/templates/ptyrex_basic.yaml
index d0d63bb..77bce6a 100644
--- a/e02/templates/ptyrex_basic.yaml
+++ b/e02/templates/ptyrex_basic.yaml
@@ -163,7 +163,7 @@ spec:
         import numpy as np
         from PIL import Image
         print('###start of log###')
-        print('json path: %s' % ("{{`{{workflow.parameters.config_json}}`}}"))
+        print('Current json path: %s' % ("{{`{{workflow.parameters.config_json}}`}}"))
         print('###end of log###')
 
         #find the output path of the recon from loading the json used in the recon
@@ -181,7 +181,7 @@ spec:
         hdf_list = glob.glob(search_string)
         hdf_list.sort()
         chosen_recon = hdf_list[-1]
-        print(f'saving this recon to jpeg: {chosen_recon}...')
+        print(f'converting this recon: {chosen_recon}\ninto jpegs...')
 
         #load obj and probe
         with h5py.File(chosen_recon,'r') as f: