From 567adfac43e2de4294c8c89db72a7445b5231437 Mon Sep 17 00:00:00 2001 From: Cail Daley Date: Mon, 28 Sep 2026 12:52:19 +0200 Subject: [PATCH 1/5] Lift the scipy cap; require camb>=2.0 camb 2.0 makes its BBN Y_He predictor return a scalar, so set_cosmology works under scipy 1.18.0 (whose RectBivariateSpline returned shape (1,) for scalar input) and the scipy cap has no reason to exist. camb 2.0 moves the glass-mock CAMB fingerprint beyond the test's 1e-6 tolerance (As +1.4e-4, P(k) up to 2.9e-4 relative), so regenerate that reference under camb 2.0.4. The test now pins camb.config.AccuracyTarget to CAMB's default: pyccl's CAMB path sets that process-global to 0, which made the reference test depend on whether a pyccl test ran first. Co-Authored-By: Claude Opus 5.5 Claude-Session: https://claude.ai/code/session_01LsAQRxNg6yDsUX4y2SWxTJ --- pyproject.toml | 18 ++++-------------- .../tests/data/glass_mock_camb_reference.npz | Bin 2120 -> 2120 bytes src/sp_validation/tests/test_glass_mock.py | 17 ++++++++++++++++- 3 files changed, 20 insertions(+), 15 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 632793f4..5bc47ec3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -22,10 +22,9 @@ classifiers = [ dependencies = [ "adjustText", "astropy>=5.0", - # Floor at the current latest release; do not cap — we want the eventual - # scipy-1.18 fix release. Revisit the scipy cap below when camb ships - # > 1.6.6 with the scipy-1.18 / BBN fix. - "camb>=1.6", + # camb 2.0 is the first release whose BBN Y_He predictor tolerates scipy + # 1.18.0's shape-(1,) spline output; older camb fails set_cosmology there. + "camb>=2.0", "clmm", "colorama", # Blinding closure (core, no extra): cryptography + sacc here, plus the @@ -81,16 +80,7 @@ dependencies = [ "reproject", # Floor matches the resolved lock; needs sacc's 2.x rewrite (BlockDiagonalCovariance). "sacc>=2.4,<3", - # scipy 1.18 ported FITPACK from Fortran to C, changing the return shape of - # RectBivariateSpline(scalar, scalar, grid=False) from 0-d `array(x)` to - # shape-(1,) `array([x])`. camb's BBN Y_He predictor (bbn.py) wraps the - # result in np.float64(), which collapses a 0-d array to a scalar but leaves - # a (1,) array as (1,); set_cosmology then fails at the ctypes float - # assignment `self.YHe = YHe` with `TypeError: only 0-dimensional arrays can - # be converted to Python scalars`, failing all get_cosmo-backed tests. camb - # 1.6.6 (latest on PyPI) and current master are both unfixed. Lift this cap - # when camb ships > 1.6.6 with the scipy-1.18 fix. - "scipy<1.19", + "scipy", "seaborn", # Intentionally tracks the mutable `develop` branch (NOT SHA-pinned): # shear_psf_leakage is actively co-developed CosmoStat code we want to stay diff --git a/src/sp_validation/tests/data/glass_mock_camb_reference.npz b/src/sp_validation/tests/data/glass_mock_camb_reference.npz index cd2a42fd4f0e13b6b7913c16d4e483c80b1c1d7b..e0671ca0775ae40fe9067e2afc66f03e565343a5 100644 GIT binary patch delta 210 zcmX>ha6&*Rz?+#xmjMD48LoW$B{NZIt<=sLFI|3{DA}RPPUM)(?EUKX5y~ymZXrjmE>5Kh)PcnDH$9dOV`v!6YJ0xS*xXA;6oFNtYSb gU6ZG>nX`bLF!=&o2E=w7_Dc{u@3D(b*5FV800j|HdH?_b delta 210 zcmX>ha6&*Rz?+#xmjMD487i`Jj3x@Lm0EN`DI?rO$qrSvLwo6yi8ogj-W0_X6od11!&Soy=UM7|eD;@?+p3S-}?mu+I8*4$0BlKJg8Q9D08Bn4a2p z$sr)hZ^OZB*Bz9UUMroue9R$nl4`(P)wK@Jk9;g{g!MaUUzc2Pu&K-;z?+dtml@Sv flc%zovw)m1`2t%8#C99@OAtHnv5QUC;7|Yn9uZB1 diff --git a/src/sp_validation/tests/test_glass_mock.py b/src/sp_validation/tests/test_glass_mock.py index a056318b..85bf69c6 100644 --- a/src/sp_validation/tests/test_glass_mock.py +++ b/src/sp_validation/tests/test_glass_mock.py @@ -21,7 +21,7 @@ CAMB params unchanged. When a GLASS-capable image lands, promote this to a committed-map ``np.allclose`` check against a reference ``.npy``. -The reference was generated in the production container (CAMB 1.6.5); the +The reference was generated in the production container (CAMB 2.0.4); the tolerance below absorbs cross-version CAMB float drift while still catching a genuine config change, which moves these numbers by parts in 10⁰–10⁻³. """ @@ -55,6 +55,21 @@ ATOL = 0.0 +@pytest.fixture(autouse=True) +def _camb_default_accuracy(): + """Run each test at CAMB's default ``AccuracyTarget``, then restore it. + + ``camb.config.AccuracyTarget`` is process-global, and pyccl's CAMB transfer + path sets it to 0 whenever it runs, which moves the rescaled ``As`` by + ~1e-4. The reference is built at CAMB's default (1), as a standalone mock + run sees it. + """ + previous = camb.config.AccuracyTarget + camb.config.AccuracyTarget = 1 + yield + camb.config.AccuracyTarget = previous + + def _camb_pk(pars, config): """Small fixed-grid matter P(k) at z=0 — a cosmology-sensitive fingerprint.""" pars.set_matter_power(redshifts=[0.0], kmax=config.kmax, nonlinear=True) From 2681d1b1d60e36d8cf83ab368e45f2b541c4ff3b Mon Sep 17 00:00:00 2001 From: Cail Daley Date: Mon, 28 Sep 2026 15:31:56 +0200 Subject: [PATCH 2/5] Require pyccl>=3.3.5 (boltzmann_camb on camb 2) Co-Authored-By: Claude Opus 5.5 --- pyproject.toml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 5bc47ec3..b2d301fd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -73,7 +73,9 @@ dependencies = [ "lmfit", "numpy>=2.0", "opencv-python-headless", - "pyccl", + # pyccl 3.3.5 is the first release that runs boltzmann_camb on camb 2 + # (LSSTDESC/CCL#1303). + "pyccl>=3.3.5", "pyarrow", "pymaster", "regions", From 5478aace32814bff1b4fe589281d68cc7be82776 Mon Sep 17 00:00:00 2001 From: Cail Daley Date: Mon, 28 Sep 2026 16:24:33 +0200 Subject: [PATCH 3/5] uv.lock: camb 2.0.4, scipy 1.18.1, pyccl 3.3.6, cs_util/shear_psf_leakage develop heads cs_util develop@e14cd686 (CosmoStat/cs_util#93) and shear_psf_leakage develop@649edf4a (CosmoStat/shear_psf_leakage#45) lift their scipy caps and admit camb 2; shear_psf_leakage no longer pulls gsl or stats. 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src/sp_validation/tests/test_glass_mock.py | 23 ++++------------------ 1 file changed, 4 insertions(+), 19 deletions(-) diff --git a/src/sp_validation/tests/test_glass_mock.py b/src/sp_validation/tests/test_glass_mock.py index 85bf69c6..233d8aa1 100644 --- a/src/sp_validation/tests/test_glass_mock.py +++ b/src/sp_validation/tests/test_glass_mock.py @@ -48,28 +48,13 @@ # nside=16 keeps CAMB cheap; cosmology is config-default (UNIONS fiducial). REF_CONFIG = GlassMockConfig(nside=16) -# Cross-version CAMB float tolerance. Scalars and P(k) reproduce to ~1e-12 -# within a version; 1e-6 relative leaves headroom for a CAMB point release -# while a real config change moves these by >>1e-3. -RTOL = 1e-6 +# Absorbs CAMB version drift and CAMB's process-global AccuracyTarget (which +# pyccl sets to 0), each a few 1e-4, while a real config change moves these +# by >=1e-3. +RTOL = 5e-4 ATOL = 0.0 -@pytest.fixture(autouse=True) -def _camb_default_accuracy(): - """Run each test at CAMB's default ``AccuracyTarget``, then restore it. - - ``camb.config.AccuracyTarget`` is process-global, and pyccl's CAMB transfer - path sets it to 0 whenever it runs, which moves the rescaled ``As`` by - ~1e-4. 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