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            <h1>software</h1>
            <h3>We like sharing resources and helping everyone to do their best science.</h3>
            <p class="page-intro">Check out the links below (or follow our <a href="https://github.com/ContextLab" target="_blank">GitHub repository</a>) to enjoy our lab's handy software tools. We always like to hear about the cool new ways our tools are being applied, so feel free to <a href="contact.html">send us a note</a> about how they're contributing to your work!</p>
            <p class="jump-links"><a href="#python">python</a> | <a href="#javascript">javascript</a> | <a href="#matlab">matlab</a></p>
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            <h2><img src="images/software/python-icon.png" alt="Python">python code</h2>

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                <p><strong>Clustrix.</strong> Clustrix is a Python package that enables seamless distributed computing on clusters. With a simple decorator, you can execute any Python function remotely on cluster resources while automatically handling dependency management, environment setup, and result collection. [<a href="https://github.com/ContextLab/clustrix" target="_blank">GitHub</a>]</p>

                <p><strong>Davos.</strong> Manage project dependencies for notebook-based projects. [<a href="https://github.com/ContextLab/davos" target="_blank">GitHub</a>]</p>

                <p><strong>Chatify.</strong> Add an LLM-based "teaching assistant" to Jupyter notebooks. [<a href="https://github.com/ContextLab/chatify" target="_blank">GitHub</a>]</p>

                <p><strong>DataWrangler.</strong> Format and clean data, with a special focus on applying natural language processing models to text data. [<a href="https://github.com/ContextLab/data-wrangler" target="_blank">GitHub</a>]</p>

                <p><strong>Abstract2Paper.</strong> Auto-generate an entire paper from a prompt or abstract. [<a href="https://github.com/ContextLab/abstract2paper" target="_blank">GitHub</a>]</p>

                <p><strong>Timecorr Toolbox.</strong> Estimate dynamic high-order correlations in multivariate timeseries data. [<a href="https://github.com/ContextLab/timecorr" target="_blank">GitHub</a>]</p>

                <p><strong>Quail.</strong> Analyze and visualize free recall data. [<a href="https://github.com/ContextLab/quail" target="_blank">GitHub</a>]</p>

                <p><strong>HyperTools.</strong> Visualize and manipulate high-dimensional data. (Way better than the MATLAB version!) [<a href="https://github.com/ContextLab/hypertools" target="_blank">GitHub</a>]</p>

                <p><strong>BrainIAK Toolbox.</strong> Collaboration with the <a href="https://pni.princeton.edu/" target="_blank">Princeton Neuroscience Institute</a> and <a href="http://www.intel.com/content/www/us/en/research/intel-research.html" target="_blank">Intel Labs</a> to implement a bunch of useful brain analysis tools, including Hierarchical Topographic Factor Analysis. [<a href="https://github.com/IntelPNI/brainiak" target="_blank">GitHub</a>]</p>
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            <p class="back-to-top">^ <a href="#top">REINSTATE CONTEXT (BACK TO TOP)</a> ^</p>
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                <p><strong>autoFR.</strong> A verbal free recall experiment that incorporates automatic speech-to-text processing, ready-to-run on Amazon Mechanical Turk. [<a href="https://github.com/ContextLab/autoFR" target="_blank">GitHub</a>]</p>
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            <p class="back-to-top">^ <a href="#top">REINSTATE CONTEXT (BACK TO TOP)</a> ^</p>
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            <h2><img src="images/software/matlab-icon.png" alt="MATLAB">matlab code</h2>

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                <p><strong>Hyperplot Tools.</strong> Plot and manipulate high-dimensional data. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/56623" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>MATLAB Ipsum.</strong> Generate filler text using MATLAB. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/43428" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>Easy resample.</strong> Simple interface for interpolating or resampling a 1D signal. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/43320" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>Chuck Close-ify.</strong> Automatically create artwork in Chuck Close's iconic style based on existing photographs. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/38770" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>Plot fMRI images.</strong> Quick and easy method for generating 2D and 3D brain plots. [<a href="https://github.com/ContextLab/brain-plots" target="_blank">GitHub</a>]</p>

                <p><strong>Generate synthetic fMRI data.</strong> Generate synthetic data for testing fMRI analyses and models. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/36125" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>Sane pColor.</strong> Create 2D images that don't look blurry in OS X's Preview PDF viewer. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/35601" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>Attach.</strong> MATLAB implementation of the attach function in R. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/35436" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>Get tight subplot handles.</strong> Allows user to exert finer control over subplot spacing in MATLAB. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/35435" target="_blank">MATLAB Central File Exchange</a>]</p>

                <p><strong>Slices.</strong> Efficiently slice a tensor along the n<sup>th</sup> dimension. [<a href="http://www.mathworks.com/matlabcentral/fileexchange/35439" target="_blank">MATLAB Central File Exchange</a>]</p>
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            <p class="back-to-top">^ <a href="#top">REINSTATE CONTEXT (BACK TO TOP)</a> ^</p>
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